EMLSAG00000001275, EMLSAG00000001275-684041 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001275
Unique NameEMLSAG00000001275-684041
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592783357|gb|GAXK01171211.1| (TSA: Calanus finmarchicus comp2672586_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 3.125e-3
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 0 
Query:  124 RHYYPEGGWGYIIIFVCLVVSVLNCGLQLS 153
            +H+YPEGGWG++++F   +      GL LS
Sbjct:  255 QHFYPEGGWGWVVVFCSFLAQCFTTGLLLS 344
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592846431|gb|GAXK01111113.1| (TSA: Calanus finmarchicus comp696998_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 5.496e-2
Identity = 12/28 (42.86%), Postives = 22/28 (78.57%), Query Frame = 0 
Query:  126 YYPEGGWGYIIIFVCLVVSVLNCGLQLS 153
            +YPEGGWG+ ++   ++++VL+ GL +S
Sbjct: 1734 FYPEGGWGWRVVTASMIINVLSMGLIMS 1817
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592842365|gb|GAXK01115179.1| (TSA: Calanus finmarchicus comp736400_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 5.905e+0
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 0 
Query:  124 RHYYPEGGWGYI 135
             H+YPEGGWG++
Sbjct:    3 EHFYPEGGWGWV 38
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Match: gi|592842369|gb|GAXK01115175.1| (TSA: Calanus finmarchicus comp736400_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 7.287e+0
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 0 
Query:  124 RHYYPEGGWGYI 135
             H+YPEGGWG++
Sbjct:    3 EHFYPEGGWGWV 38
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BLAST of EMLSAG00000001275 vs. L. salmonis peptides
Match: EMLSAP00000001275 (pep:novel supercontig:LSalAtl2s:LSalAtl2s120:535922:536551:-1 gene:EMLSAG00000001275 transcript:EMLSAT00000001275 description:"augustus_masked-LSalAtl2s120-processed-gene-5.0")

HSP 1 Score: 428.713 bits (1101), Expect = 4.867e-154
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 
Query:    1 MNHHHMENKVSESSSLPDNLDILSSPGNSSPQKNCSSPTPSKNNFLIQDQIFYEFPKGDGIYYTHKVLPDLSEKDVECSNTNDDSKLFFIPDKNKIRTSEECREIREKQLHLNSRLSSGDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPIFSESSSSVEDSEEKKGVRTNVINLGRKLIIPYFIYNNIIVPWVLFMKQ 209
            MNHHHMENKVSESSSLPDNLDILSSPGNSSPQKNCSSPTPSKNNFLIQDQIFYEFPKGDGIYYTHKVLPDLSEKDVECSNTNDDSKLFFIPDKNKIRTSEECREIREKQLHLNSRLSSGDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPIFSESSSSVEDSEEKKGVRTNVINLGRKLIIPYFIYNNIIVPWVLFMKQ
Sbjct:    1 MNHHHMENKVSESSSLPDNLDILSSPGNSSPQKNCSSPTPSKNNFLIQDQIFYEFPKGDGIYYTHKVLPDLSEKDVECSNTNDDSKLFFIPDKNKIRTSEECREIREKQLHLNSRLSSGDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPIFSESSSSVEDSEEKKGVRTNVINLGRKLIIPYFIYNNIIVPWVLFMKQ 209
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BLAST of EMLSAG00000001275 vs. L. salmonis peptides
Match: EMLSAP00000003536 (pep:novel supercontig:LSalAtl2s:LSalAtl2s193:5284:117242:1 gene:EMLSAG00000003536 transcript:EMLSAT00000003536 description:"maker-LSalAtl2s193-augustus-gene-1.11")

HSP 1 Score: 51.2174 bits (121), Expect = 5.185e-8
Identity = 21/43 (48.84%), Postives = 26/43 (60.47%), Query Frame = 0 
Query:  119 GDVWYRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPI 161
            G    +HYYPEGGWG++I F C +V +   GLQLS     L I
Sbjct:   14 GATLRQHYYPEGGWGWVITFCCFLVELFTTGLQLSFSILYLEI 56
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BLAST of EMLSAG00000001275 vs. Select Arthropod Genomes
Match: EEB18529.1 (hypothetical protein Phum_PHUM517920 [Pediculus humanus corporis])

HSP 1 Score: 53.1434 bits (126), Expect = 4.499e-8
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 0 
Query:  123 YRHYYPEGGWGYIIIFVCLVVSVLNCGLQLSLCGTVLPIFSESSSSVE 170
            +RHYYPEGGWGY+I+   + V V+N G QLS      PI+ + ++  E
Sbjct:  102 WRHYYPEGGWGYVIVICSVFVHVINHGFQLSFGILHGPIYEKFNAGFE 149
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001275 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001275 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 14
Match NameE-valueIdentityDescription
gi|592783357|gb|GAXK01171211.1|3.125e-343.33TSA: Calanus finmarchicus comp2672586_c0_seq1 tran... [more]
gi|592846431|gb|GAXK01111113.1|5.496e-242.86TSA: Calanus finmarchicus comp696998_c0_seq1 trans... [more]
gi|592842365|gb|GAXK01115179.1|5.905e+066.67TSA: Calanus finmarchicus comp736400_c0_seq6 trans... [more]
gi|592842369|gb|GAXK01115175.1|7.287e+066.67TSA: Calanus finmarchicus comp736400_c0_seq2 trans... [more]

Pages

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BLAST of EMLSAG00000001275 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000012754.867e-154100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s120:53592... [more]
EMLSAP000000035365.185e-848.84pep:novel supercontig:LSalAtl2s:LSalAtl2s193:5284:... [more]
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BLAST of EMLSAG00000001275 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001275 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
EEB18529.14.499e-845.83hypothetical protein Phum_PHUM517920 [Pediculus hu... [more]
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BLAST of EMLSAG00000001275 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001275 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s120supercontigLSalAtl2s120:535922..536551 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s120-processed-gene-5.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001275 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001275EMLSAT00000001275-697122Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s120:535922..536551-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001275-684041 ID=EMLSAG00000001275-684041|Name=EMLSAG00000001275|organism=Lepeophtheirus salmonis|type=gene|length=630bp|location=Sequence derived from alignment at LSalAtl2s120:535922..536551- (Lepeophtheirus salmonis)
ATGAATCATCATCACATGGAGAATAAAGTGTCTGAGAGTTCATCCCTTCC
CGATAATCTCGATATTCTCTCTTCTCCCGGGAATTCCTCTCCTCAAAAAA
ATTGTTCCTCTCCCACTCCTTCAAAAAATAATTTCCTTATTCAAGATCAA
ATATTTTACGAGTTTCCAAAGGGGGATGGGATCTACTATACGCATAAAGT
CCTTCCAGATCTCTCCGAAAAGGATGTGGAATGCTCGAATACGAATGATG
ACAGTAAATTATTCTTTATTCCAGACAAGAATAAGATTCGAACAAGTGAG
GAGTGTCGGGAGATACGAGAGAAACAGTTGCATTTGAACTCTCGACTATC
ATCTGGGGATGTTTGGTATCGGCACTATTATCCAGAGGGCGGCTGGGGCT
ATATCATTATTTTTGTGTGTTTGGTCGTGAGTGTACTTAATTGTGGATTA
CAGCTGAGTTTGTGTGGCACGGTTTTACCTATTTTTTCCGAATCATCATC
CTCAGTGGAAGACTCCGAGGAGAAGAAGGGAGTTCGAACCAACGTCATTA
ATCTCGGTAGGAAATTAATTATTCCTTATTTTATTTATAACAACATTATT
GTTCCTTGGGTTCTATTCATGAAGCAATAA
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