EMLSAG00000001346, EMLSAG00000001346-684112 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001346
Unique NameEMLSAG00000001346-684112
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001346 vs. C. finmarchicus
Match: gi|592791902|gb|GAXK01162666.1| (TSA: Calanus finmarchicus comp3559059_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.437e+0
Identity = 20/65 (30.77%), Postives = 31/65 (47.69%), Query Frame = 0 
Query:   10 DGERDESHPTTFDNFKESSTFESLPGRIPKRRVGGSKKYRILLADVWEMEASLSATRINKKNYGI 74
            D E D+ H   +DN +E +    +  R+P +R  G  K RIL      M+  +   + N+ N GI
Sbjct:   77 DNEYDDEHDNEYDNQEEMNKRSWMRMRLPTKRSWG--KIRILK----RMDGKIRLLKKNRGNIGI 253
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BLAST of EMLSAG00000001346 vs. C. finmarchicus
Match: gi|592882736|gb|GAXK01075639.1| (TSA: Calanus finmarchicus comp1835721_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.319e+0
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 0 
Query:   55 VWEMEASLSATRINKKNYG 73
            +WEME + + TR+NK  YG
Sbjct:  884 MWEMEKARNITRLNKLKYG 940
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BLAST of EMLSAG00000001346 vs. C. finmarchicus
Match: gi|592938777|gb|GAXK01019776.1| (TSA: Calanus finmarchicus comp433730_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.686e+0
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 0 
Query:   19 TTFDNFKESSTFESLPGRIP 38
            T FDNF+ SST  S P  IP
Sbjct:  902 TWFDNFRASSTLSSFPLDIP 961
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BLAST of EMLSAG00000001346 vs. C. finmarchicus
Match: gi|592801139|gb|GAXK01153429.1| (TSA: Calanus finmarchicus comp544365_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.857e+0
Identity = 13/52 (25.00%), Postives = 25/52 (48.08%), Query Frame = 0 
Query:    8 NIDGERDESHPTTFDNFKESSTFESLPGRI-------PKRRVGGSKKYRILL 52
            N+  ++   HP T D  +E    + LPG I       P+ ++  S +Y +++
Sbjct:  408 NLHSQQQLHHPLTID*DEEHHHLQLLPGHIVALHSLSPQSKIADSLRYSVII 563
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BLAST of EMLSAG00000001346 vs. C. finmarchicus
Match: gi|592784949|gb|GAXK01169619.1| (TSA: Calanus finmarchicus comp27_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.744e+0
Identity = 20/52 (38.46%), Postives = 26/52 (50.00%), Query Frame = 0 
Query:   21 FDNFKESSTFESLPGRIPKRRV-GGSKKYRILLADV----WEMEASLSATRI 67
            F+  + ++  +  P RI   RV GG+KKYR L  D     W  EA    TRI
Sbjct:  498 FELARPAAMTKLAPQRIHTLRVRGGNKKYRALRLDTGNFSWGSEAVARKTRI 653
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BLAST of EMLSAG00000001346 vs. C. finmarchicus
Match: gi|592882735|gb|GAXK01075640.1| (TSA: Calanus finmarchicus comp1835721_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.917e+0
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 0 
Query:   55 VWEMEASLSATRINKKNYG 73
            +WEME + + TR+NK  YG
Sbjct:  227 MWEMEKARNITRLNKLKYG 283
[Close]
BLAST of EMLSAG00000001346 vs. L. salmonis peptides
Match: EMLSAP00000001346 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:17504:18509:1 gene:EMLSAG00000001346 transcript:EMLSAT00000001346 description:"snap_masked-LSalAtl2s1228-processed-gene-0.8")

HSP 1 Score: 156.377 bits (394), Expect = 6.012e-51
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:    1 MRLMRTANIDGERDESHPTTFDNFKESSTFESLPGRIPKRRVGGSKKYRILLADVWEMEASLSATRINKKNYGIS 75
            MRLMRTANIDGERDESHPTTFDNFKESSTFESLPGRIPKRRVGGSKKYRILLADVWEMEASLSATRINKKNYGIS
Sbjct:    1 MRLMRTANIDGERDESHPTTFDNFKESSTFESLPGRIPKRRVGGSKKYRILLADVWEMEASLSATRINKKNYGIS 75
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001346 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001346 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592791902|gb|GAXK01162666.1|1.437e+030.77TSA: Calanus finmarchicus comp3559059_c0_seq1 tran... [more]
gi|592882736|gb|GAXK01075639.1|3.319e+052.63TSA: Calanus finmarchicus comp1835721_c0_seq1 tran... [more]
gi|592938777|gb|GAXK01019776.1|5.686e+060.00TSA: Calanus finmarchicus comp433730_c1_seq1 trans... [more]
gi|592801139|gb|GAXK01153429.1|5.857e+025.00TSA: Calanus finmarchicus comp544365_c1_seq6 trans... [more]
gi|592784949|gb|GAXK01169619.1|6.744e+038.46TSA: Calanus finmarchicus comp27_c0_seq1 transcrib... [more]
gi|592882735|gb|GAXK01075640.1|8.917e+052.63TSA: Calanus finmarchicus comp1835721_c0_seq2 tran... [more]
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BLAST of EMLSAG00000001346 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000013466.012e-51100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:1750... [more]
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BLAST of EMLSAG00000001346 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001346 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001346 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001346 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1228supercontigLSalAtl2s1228:17504..18509 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1228-processed-gene-0.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001346 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001346EMLSAT00000001346-697193Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1228:17504..18509+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001346-684112 ID=EMLSAG00000001346-684112|Name=EMLSAG00000001346|organism=Lepeophtheirus salmonis|type=gene|length=1006bp|location=Sequence derived from alignment at LSalAtl2s1228:17504..18509+ (Lepeophtheirus salmonis)
ATGCGACTAATGAGGACTGCAAATATTGACGGTGAAAGGGATGAGAGTCA
TCCTACAACCTTTGACAATTTCAAGGAGTCTTCGACTTTCGAGAGCCTTC
CTGGAAGAATCCCTAAGTAGTTAGTAGTTGGATAGAAAGAGAAAAATCAC
AGAAAGAGAGAGAAATAATAGAACAMGGGAGCCAAGTGACTTACATTCAT
TTTTAATAGCCATTATCAAAGATAAGAATCTTACATATTTATAATTAAAA
TATTTAAAAAANCCTGGATTAATTATAATTATATGCTTTCAGATGGTATT
TAGAAGAAATACAAAGTACTGAGTCCTCTTTAAAAATATATTCCCTTTAT
AGCATCATTATTTGACGTATTTATTTAAGCCAATAGCATAAGCTATTTAT
AGAACATCAAATTGAACTCATCTAAAAAACAATACTTAGATGATTAAATG
AATATCTTTAAGATATTTTTTGGAAAATTAACAACATTTTGCTAATTATA
TTATATTATAAAATCCTCTCCTTCCTAAAAACATCATATTTTTATATTTT
TTCTTTTCCATTTTTACATAATATTTTATTAAAGATACTAACTAAATTCA
TTCGAAATGTCACAAATCACAATATTAAGGAAATGTAATTAATTTTTGAT
CAAACTAAGAAAATTACTCATTTCGCAAAATATCTAAAAATAATCCAAAA
AAATAACATAATTTGGCCAATTGCATGTACGCGTCAAAATGAGTCAACTA
GTAGGGCAGTCATGGTTTAATGCTATAGGCAGTCACAAAGAAAAAAAAAT
AATAAATAAAAATAGGCGTCGTGTGGGCGGTAGTAAAAAATATAGAATAT
TGCTAGCAGATGTATGGGAAATGGAGGCTAGTTTATCTGCCACGAGAATT
AATAAAAAGAACTACGGAATGTTAATTTTACAAACTTTACTTCTTATTCA
GAAATAATGTATAAATTTAGTAAATTTAGTATTAGTAAATTTTTTTTAGA
AGTTAG
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