EMLSAG00000001431, EMLSAG00000001431-684197 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001431
Unique NameEMLSAG00000001431-684197
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001431 vs. C. finmarchicus
Match: gi|592900881|gb|GAXK01057494.1| (TSA: Calanus finmarchicus comp2607773_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.005e-1
Identity = 18/73 (24.66%), Postives = 29/73 (39.73%), Query Frame = 0 
Query:   29 IKPFLQMHFTP---------FIIHQGNCILILAQGNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHFK 92
            ++ F Q HF P         F+    + +L     +   H WG +S    V+ G  + ++A   CP  A  F 
Sbjct:   64 VQIFRQEHFYPVNYLFWEMMFMTKHKDDVLAEHSHSYASHLWGHMSRGVQVEWGSAVGEMARNHCPEAAAGFD 282
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BLAST of EMLSAG00000001431 vs. C. finmarchicus
Match: gi|592895688|gb|GAXK01062687.1| (TSA: Calanus finmarchicus comp377969_c16_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.223e+0
Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   26 ALIIKPFLQMHFTPFIIHQGNCILILAQGNLIEHY 60
            A I++P L +H    +IH G C+ IL    +++ Y
Sbjct:  370 ADILEPGLSLHRESVMIHLGTCLQILIGDQMMKRY 474
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BLAST of EMLSAG00000001431 vs. C. finmarchicus
Match: gi|592895681|gb|GAXK01062694.1| (TSA: Calanus finmarchicus comp377969_c19_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.301e+0
Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   26 ALIIKPFLQMHFTPFIIHQGNCILILAQGNLIEHY 60
            A I++P L +H    +IH G C+ IL    +++ Y
Sbjct:  227 ADILEPGLSLHRESVMIHLGTCLQILIGDQMMKRY 331
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BLAST of EMLSAG00000001431 vs. C. finmarchicus
Match: gi|592895689|gb|GAXK01062686.1| (TSA: Calanus finmarchicus comp377969_c16_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.335e+0
Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   26 ALIIKPFLQMHFTPFIIHQGNCILILAQGNLIEHY 60
            A I++P L +H    +IH G C+ IL    +++ Y
Sbjct:  404 ADILEPGLSLHRESVMIHLGTCLQILIGDQMMKRY 508
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BLAST of EMLSAG00000001431 vs. C. finmarchicus
Match: gi|592895680|gb|GAXK01062695.1| (TSA: Calanus finmarchicus comp377969_c19_seq2 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.435e+0
Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   26 ALIIKPFLQMHFTPFIIHQGNCILILAQGNLIEHY 60
            A I++P L +H    +IH G C+ IL    +++ Y
Sbjct:  227 ADILEPGLSLHRESVMIHLGTCLQILIGDQMMKRY 331
[Close]
BLAST of EMLSAG00000001431 vs. C. finmarchicus
Match: gi|592865821|gb|GAXK01091741.1| (TSA: Calanus finmarchicus comp2157377_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.464e+0
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 0 
Query:   54 GNLIEHYWGKLSSKTNVKPG 73
            GNL+EHYW  L S    + G
Sbjct:  355 GNLLEHYWSDLDSSCCCRAG 414
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BLAST of EMLSAG00000001431 vs. C. finmarchicus
Match: gi|592895686|gb|GAXK01062689.1| (TSA: Calanus finmarchicus comp377969_c16_seq4 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.470e+0
Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   26 ALIIKPFLQMHFTPFIIHQGNCILILAQGNLIEHY 60
            A I++P L +H    +IH G C+ IL    +++ Y
Sbjct:  233 ADILEPGLSLHRESVMIHLGTCLQILIGDQMMKRY 337
[Close]
BLAST of EMLSAG00000001431 vs. C. finmarchicus
Match: gi|592810401|gb|GAXK01144167.1| (TSA: Calanus finmarchicus comp1124334_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.296e+0
Identity = 13/47 (27.66%), Postives = 23/47 (48.94%), Query Frame = 0 
Query:   45 GNCILILAQGNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHF 91
            G C+ + +   L+  YW  L +  +++  M +  I   KC +I KH 
Sbjct:   93 GGCLRVKSCPILMISYWILLLTLRDLRSSMAVSTIISSKCQIIKKHM 233
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BLAST of EMLSAG00000001431 vs. L. salmonis peptides
Match: EMLSAP00000001431 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1244:23497:23801:-1 gene:EMLSAG00000001431 transcript:EMLSAT00000001431 description:"maker-LSalAtl2s1244-snap-gene-0.46")

HSP 1 Score: 189.119 bits (479), Expect = 2.658e-63
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 
Query:    1 MSKGPSPFTFNRIKLCKDKTINVPNALIIKPFLQMHFTPFIIHQGNCILILAQGNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHFK 92
            MSKGPSPFTFNRIKLCKDKTINVPNALIIKPFLQMHFTPFIIHQGNCILILAQGNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHFK
Sbjct:    1 MSKGPSPFTFNRIKLCKDKTINVPNALIIKPFLQMHFTPFIIHQGNCILILAQGNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHFK 92
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BLAST of EMLSAG00000001431 vs. L. salmonis peptides
Match: EMLSAP00000002669 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1541:42228:43412:-1 gene:EMLSAG00000002669 transcript:EMLSAT00000002669 description:"maker-LSalAtl2s1541-augustus-gene-0.4")

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-20
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 0 
Query:    1 MSKGPSPFTFNRIKLCKDKTINV-------------PNAL--IIKPFLQMHFTPFIIHQGNCILILAQGNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHFK 92
            ++ GP+ FT N IKLCK KT+               PNA   +  P  Q+ F          +    + +LI HYWGKLSSKT +KPGMPIHD+ALEKCPL AK+F+
Sbjct:  208 INNGPAMFTNNIIKLCKGKTMKTINEAKCHNIQLFPPNAFFSVFYPSWQLFFNN---DSREDVKNRLKDSLIAHYWGKLSSKTKIKPGMPIHDLALEKCPLTAKYFQ 311
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BLAST of EMLSAG00000001431 vs. L. salmonis peptides
Match: EMLSAP00000008279 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4:615076:616389:1 gene:EMLSAG00000008279 transcript:EMLSAT00000008279 description:"maker-LSalAtl2s4-snap-gene-6.13")

HSP 1 Score: 82.4185 bits (202), Expect = 3.587e-20
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 0 
Query:    1 MSKGPSPFTFNRIKLCKDKTINV-------------PNAL--IIKPFLQMHFTPFIIHQGNCILILAQGNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHFK 92
            ++ GP+ FT N IKLCK  T+               PNA   I  P  Q++F    I     +      +L+ HYWGKLSSKT VK GMPI+D+ALEKCP+IAK+FK
Sbjct:  267 INNGPAMFTSNLIKLCKATTMETINRGKCHNIQLLPPNAFYSIYYPSWQLYFD---IGSKEVVKKQLNNSLVAHYWGKLSSKTKVKSGMPIYDLALEKCPVIAKYFK 370
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BLAST of EMLSAG00000001431 vs. L. salmonis peptides
Match: EMLSAP00000000534 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1086:87045:88218:-1 gene:EMLSAG00000000534 transcript:EMLSAT00000000534 description:"maker-LSalAtl2s1086-augustus-gene-0.6")

HSP 1 Score: 78.9518 bits (193), Expect = 5.258e-19
Identity = 50/106 (47.17%), Postives = 61/106 (57.55%), Query Frame = 0 
Query:    1 MSKGPSPFTFNRIKLCKD---KTINV----------PNAL--IIKPFLQMHFTPFIIHQGNCILILAQGNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHF 91
            ++ GP+ FT N IKLCK    KTIN           PNA   +  P  Q++F          I    + +LI HYWGKLSSKT +K GMPIHD+ALEKCPL AK+F
Sbjct:  240 INNGPAMFTNNIIKLCKANTMKTINDAKCHNFKILPPNAFFPVYYPSWQLYFDS---GSREEIKKRLKDSLIAHYWGKLSSKTKIKSGMPIHDLALEKCPLTAKYF 342
[Close]
BLAST of EMLSAG00000001431 vs. L. salmonis peptides
Match: EMLSAP00000001064 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1177:77041:77400:1 gene:EMLSAG00000001064 transcript:EMLSAT00000001064 description:"augustus_masked-LSalAtl2s1177-processed-gene-0.0")

HSP 1 Score: 70.8626 bits (172), Expect = 5.847e-17
Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 0 
Query:    4 GPSPFTFNRIKLCKDK---TINV----------PNAL--IIKPFLQMHFTPFIIHQGNCILILAQGN--LIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHFK 92
            GP   T N IKLCK K   TIN           PN    I  P  Q++F       G+  ++  + N  LI HYWGKLSSKT +K  MPIHD+ALEKC L AK+FK
Sbjct:   19 GPLMVTSNLIKLCKAKAMKTINDAKCHNIQLLPPNTFFSIYYPLWQLYF-----DTGSREIVKKRLNNSLIAHYWGKLSSKTKIKSRMPIHDLALEKCSLTAKYFK 119
[Close]
BLAST of EMLSAG00000001431 vs. nr
Match: gi|290563090|gb|ADD38939.1| (Lactosylceramide 4-alpha-galactosyltransferase [Lepeophtheirus salmonis])

HSP 1 Score: 70.8626 bits (172), Expect = 1.477e-12
Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 0 
Query:    4 GPSPFTFNRIKLCKDK---TINVPNALIIK-----PFLQMHFTPFIIHQGNCILILAQ----GNLIEHYWGKLSSKTNVKPGMPIHDIALEKCPLIAKHFK 92
            GP   T N I+LCK K   TIN      I+      F  +++  + ++       + +     +LI HYWGKLSSKT +K GMPIHD+ALEKC L AK+FK
Sbjct:  248 GPLMVTSNLIQLCKAKIMKTINDAKCYNIQLLPPNTFFSIYYPSWKLYFDTSSREIVKKRLNNSLIAHYWGKLSSKTKIKSGMPIHDLALEKCSLTAKYFK 348
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001431 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001431 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592900881|gb|GAXK01057494.1|1.005e-124.66TSA: Calanus finmarchicus comp2607773_c0_seq3 tran... [more]
gi|592895688|gb|GAXK01062687.1|1.223e+034.29TSA: Calanus finmarchicus comp377969_c16_seq2 tran... [more]
gi|592895681|gb|GAXK01062694.1|1.301e+034.29TSA: Calanus finmarchicus comp377969_c19_seq1 tran... [more]
gi|592895689|gb|GAXK01062686.1|1.335e+034.29TSA: Calanus finmarchicus comp377969_c16_seq1 tran... [more]
gi|592895680|gb|GAXK01062695.1|1.435e+034.29TSA: Calanus finmarchicus comp377969_c19_seq2 tran... [more]
gi|592865821|gb|GAXK01091741.1|1.464e+050.00TSA: Calanus finmarchicus comp2157377_c0_seq1 tran... [more]
gi|592895686|gb|GAXK01062689.1|1.470e+034.29TSA: Calanus finmarchicus comp377969_c16_seq4 tran... [more]
gi|592810401|gb|GAXK01144167.1|5.296e+027.66TSA: Calanus finmarchicus comp1124334_c0_seq3 tran... [more]
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BLAST of EMLSAG00000001431 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000014312.658e-63100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1244:2349... [more]
EMLSAP000000026692.982e-2044.86pep:novel supercontig:LSalAtl2s:LSalAtl2s1541:4222... [more]
EMLSAP000000082793.587e-2044.86pep:novel supercontig:LSalAtl2s:LSalAtl2s4:615076:... [more]
EMLSAP000000005345.258e-1947.17pep:novel supercontig:LSalAtl2s:LSalAtl2s1086:8704... [more]
EMLSAP000000010645.847e-1746.23pep:novel supercontig:LSalAtl2s:LSalAtl2s1177:7704... [more]
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BLAST of EMLSAG00000001431 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001431 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001431 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|290563090|gb|ADD38939.1|1.477e-1242.57Lactosylceramide 4-alpha-galactosyltransferase [Le... [more]
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BLAST of EMLSAG00000001431 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1244supercontigLSalAtl2s1244:23497..23801 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1244-snap-gene-0.46
Biotypeprotein_coding
EvidenceIEA
NoteLactosylceramide 4-alpha-galactosyltransferase [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001431 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001431EMLSAT00000001431-697278Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1244:23497..23801-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001431-684197 ID=EMLSAG00000001431-684197|Name=EMLSAG00000001431|organism=Lepeophtheirus salmonis|type=gene|length=305bp|location=Sequence derived from alignment at LSalAtl2s1244:23497..23801- (Lepeophtheirus salmonis)
ATGAGTAAAGGGCCCTCACCTTTTACTTTCAACCGCATCAAACTTTGTAA
AGATAAAACAATCAATGTACCAAATGCCTTAATAATTAAGCCCTTCCTAC
AAATGCATTTTACTCCATTTATTATCCATCAGGGCAATTGTATTTTGATA
CTGGCTCAAGGGAAGTAATTAAAAAACAACTAAATAACAGTTTAATAGAA
CACTATTGGGGAAAACTTTCATCAAAAACAAATGTCAAGCCAGGAATGCC
CATTCATGATATTGCTCTTGAAAAATGTCCCCTCATTGCCAAGCACTTTA
AATAA
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