EMLSAG00000001453, EMLSAG00000001453-684219 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001453
Unique NameEMLSAG00000001453-684219
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001453 vs. C. finmarchicus
Match: gi|592782825|gb|GAXK01171743.1| (TSA: Calanus finmarchicus comp62711_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.496e+0
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 0 
Query:    3 EVCSAGPCPGVSGCHLRDLHRLP 25
            ++C  GP P V G H + LHR P
Sbjct: 3061 QLCEPGPGPHVDGVHQQGLHREP 3129
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BLAST of EMLSAG00000001453 vs. C. finmarchicus
Match: gi|592750843|gb|GAXK01203570.1| (TSA: Calanus finmarchicus comp1569692_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.747e+0
Identity = 16/41 (39.02%), Postives = 20/41 (48.78%), Query Frame = 0 
Query:   49 STIRYGSFLKIFRRYL-----DWDLFKRTSIQPVIMESVRC 84
            S +R G F  +F  +L      W LF   S+QP  ME  RC
Sbjct:  236 SDLRSG*FTDLFSWFLWQAWIHWALFGSESVQPATMEVQRC 358
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BLAST of EMLSAG00000001453 vs. L. salmonis peptides
Match: EMLSAP00000001453 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:334606:334887:1 gene:EMLSAG00000001453 transcript:EMLSAT00000001453 description:"augustus_masked-LSalAtl2s1247-processed-gene-2.5")

HSP 1 Score: 192.971 bits (489), Expect = 7.558e-65
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 
Query:    1 MKEVCSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSKSSWEASQAXSTIRYGSFLKIFRRYLDWDLFKRTSIQPVIMESVRCMPHWNPTVQ 93
            MKEVCSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSKSSWEASQAXSTIRYGSFLKIFRRYLDWDLFKRTSIQPVIMESVRCMPHWNPTVQ
Sbjct:    1 MKEVCSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSKSSWEASQAXSTIRYGSFLKIFRRYLDWDLFKRTSIQPVIMESVRCMPHWNPTVQ 93
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BLAST of EMLSAG00000001453 vs. L. salmonis peptides
Match: EMLSAP00000001457 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:331899:332603:1 gene:EMLSAG00000001457 transcript:EMLSAT00000001457 description:"augustus-LSalAtl2s1247-processed-gene-2.8")

HSP 1 Score: 82.8037 bits (203), Expect = 4.302e-21
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 
Query:    1 MKEVCSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSKSS 41
            MKEV SAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPS  S
Sbjct:    1 MKEVYSAGPCPGVSGCHLRDLHRLPNDGCPSLGPSGPSYES 41
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001453 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001453 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592782825|gb|GAXK01171743.1|1.496e+047.83TSA: Calanus finmarchicus comp62711_c0_seq1 transc... [more]
gi|592750843|gb|GAXK01203570.1|1.747e+039.02TSA: Calanus finmarchicus comp1569692_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001453 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000014537.558e-65100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:3346... [more]
EMLSAP000000014574.302e-2192.68pep:novel supercontig:LSalAtl2s:LSalAtl2s1247:3318... [more]
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BLAST of EMLSAG00000001453 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001453 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001453 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001453 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1247supercontigLSalAtl2s1247:334606..334887 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1247-processed-gene-2.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001453 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001453EMLSAT00000001453-697300Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1247:334606..334887+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001453-684219 ID=EMLSAG00000001453-684219|Name=EMLSAG00000001453|organism=Lepeophtheirus salmonis|type=gene|length=282bp|location=Sequence derived from alignment at LSalAtl2s1247:334606..334887+ (Lepeophtheirus salmonis)
ATGAAGGAAGTTTGCAGCGCAGGACCTTGTCCTGGAGTATCGGGTTGTCA
TCTCCGAGATCTGCACCGCCTTCCAAATGATGGGTGCCCTTCCCTTGGTC
CCTCTGGGCCAAGTAAATCGAGCTGGGAGGCTTCTCAAGCCGMCTCTACC
ATTAGATATGGAAGCTTTCTCAAGATATTTAGAAGATACTTGGATTGGGA
CCTCTTCAAACGAACCTCTATTCAGCCAGTCATCATGGAATCAGTGCGAT
GCATGCCACACTGGAACCCCACGGTCCAGTAA
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