EMLSAG00000001526, EMLSAG00000001526-684292 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001526
Unique NameEMLSAG00000001526-684292
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001526 vs. C. finmarchicus
Match: gi|592803735|gb|GAXK01150833.1| (TSA: Calanus finmarchicus comp155393_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.206e+0
Identity = 18/65 (27.69%), Postives = 30/65 (46.15%), Query Frame = 0 
Query:   42 PYEEHSIDNIKSGVMEMQLYFFDSRKFCHYEDANKSN---NKGSIPSIMAISLIFKVNIYIKRFH 103
            P  +H+ D +   +  +    F    F H+   N+ N   N   I +I+ I+L+F  +IYI  F 
Sbjct:   98 PVLQHNSDVVVDSIYPLPSLLFKQALFLHFLFLNQFNWFVNLKLINNIVIITLVFTFDIYINNFQ 292
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BLAST of EMLSAG00000001526 vs. C. finmarchicus
Match: gi|592803736|gb|GAXK01150832.1| (TSA: Calanus finmarchicus comp155393_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.473e+0
Identity = 18/65 (27.69%), Postives = 30/65 (46.15%), Query Frame = 0 
Query:   42 PYEEHSIDNIKSGVMEMQLYFFDSRKFCHYEDANKSN---NKGSIPSIMAISLIFKVNIYIKRFH 103
            P  +H+ D +   +  +    F    F H+   N+ N   N   I +I+ I+L+F  +IYI  F 
Sbjct: 1478 PVLQHNSDVVVDSIYPLPSLLFKQALFLHFLFLNQFNWFVNLKLINNIVIITLVFTFDIYINNFQ 1672
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BLAST of EMLSAG00000001526 vs. C. finmarchicus
Match: gi|592885098|gb|GAXK01073277.1| (TSA: Calanus finmarchicus comp149300_c1_seq28 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.470e+0
Identity = 21/84 (25.00%), Postives = 44/84 (52.38%), Query Frame = 0 
Query:    8 LLLQSSKHLTLTLDSLKSTEKSKNFSLSHIDLHWPYEEHSIDNIKSGVM--EMQLYFFDSRKFCHYEDANKSNNKGSIPSIMAI 89
            ++L ++   T+   S K+    +N  LSH+DL        +D+   GV+  + ++  FD+  F   ++A  + +  S+PS+++I
Sbjct:  850 MILPNNVEKTMIPASKKTLYDEQNLKLSHLDLKTGLVVKILDD-NFGVINQDSKMILFDTCDFWISQEATAAQSSKSLPSLVSI 1098
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BLAST of EMLSAG00000001526 vs. C. finmarchicus
Match: gi|592885102|gb|GAXK01073273.1| (TSA: Calanus finmarchicus comp149300_c1_seq24 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.502e+0
Identity = 21/84 (25.00%), Postives = 44/84 (52.38%), Query Frame = 0 
Query:    8 LLLQSSKHLTLTLDSLKSTEKSKNFSLSHIDLHWPYEEHSIDNIKSGVM--EMQLYFFDSRKFCHYEDANKSNNKGSIPSIMAI 89
            ++L ++   T+   S K+    +N  LSH+DL        +D+   GV+  + ++  FD+  F   ++A  + +  S+PS+++I
Sbjct:  994 MILPNNVEKTMIPASKKTLYDEQNLKLSHLDLKTGLVVKILDD-NFGVINQDSKMILFDTCDFWISQEATAAQSSKSLPSLVSI 1242
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BLAST of EMLSAG00000001526 vs. C. finmarchicus
Match: gi|592885103|gb|GAXK01073272.1| (TSA: Calanus finmarchicus comp149300_c1_seq23 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.510e+0
Identity = 21/84 (25.00%), Postives = 44/84 (52.38%), Query Frame = 0 
Query:    8 LLLQSSKHLTLTLDSLKSTEKSKNFSLSHIDLHWPYEEHSIDNIKSGVM--EMQLYFFDSRKFCHYEDANKSNNKGSIPSIMAI 89
            ++L ++   T+   S K+    +N  LSH+DL        +D+   GV+  + ++  FD+  F   ++A  + +  S+PS+++I
Sbjct: 1039 MILPNNVEKTMIPASKKTLYDEQNLKLSHLDLKTGLVVKILDD-NFGVINQDSKMILFDTCDFWISQEATAAQSSKSLPSLVSI 1287
[Close]
BLAST of EMLSAG00000001526 vs. C. finmarchicus
Match: gi|592885077|gb|GAXK01073298.1| (TSA: Calanus finmarchicus comp149300_c1_seq49 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 6.897e+0
Identity = 17/62 (27.42%), Postives = 33/62 (53.23%), Query Frame = 0 
Query:   31 NFSLSHIDLHWPYEEHSIDNIKSGVM--EMQLYFFDSRKFCHYEDANKSNNKGSIPSIMAIS 90
            N  LSH+DL        +D+   GV+  E ++  FD+  F   ++A  + +  S+PS++++ 
Sbjct:  457 NLKLSHLDLKEGLVVKILDD-NFGVLKQESRMVLFDTCDFWTSQEATAAQSNKSLPSLVSVG 639
[Close]
BLAST of EMLSAG00000001526 vs. L. salmonis peptides
Match: EMLSAP00000001526 (pep:novel supercontig:LSalAtl2s:LSalAtl2s12626:379:918:1 gene:EMLSAG00000001526 transcript:EMLSAT00000001526 description:"maker-LSalAtl2s12626-snap-gene-0.1")

HSP 1 Score: 211.46 bits (537), Expect = 8.057e-72
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 
Query:    1 MFCFSVRLLLQSSKHLTLTLDSLKSTEKSKNFSLSHIDLHWPYEEHSIDNIKSGVMEMQLYFFDSRKFCHYEDANKSNNKGSIPSIMAISLIFKVNIYIKRFH 103
            MFCFSVRLLLQSSKHLTLTLDSLKSTEKSKNFSLSHIDLHWPYEEHSIDNIKSGVMEMQLYFFDSRKFCHYEDANKSNNKGSIPSIMAISLIFKVNIYIKRFH
Sbjct:    1 MFCFSVRLLLQSSKHLTLTLDSLKSTEKSKNFSLSHIDLHWPYEEHSIDNIKSGVMEMQLYFFDSRKFCHYEDANKSNNKGSIPSIMAISLIFKVNIYIKRFH 103
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001526 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001526 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592803735|gb|GAXK01150833.1|1.206e+027.69TSA: Calanus finmarchicus comp155393_c0_seq2 trans... [more]
gi|592803736|gb|GAXK01150832.1|1.473e+027.69TSA: Calanus finmarchicus comp155393_c0_seq1 trans... [more]
gi|592885098|gb|GAXK01073277.1|2.470e+025.00TSA: Calanus finmarchicus comp149300_c1_seq28 tran... [more]
gi|592885102|gb|GAXK01073273.1|2.502e+025.00TSA: Calanus finmarchicus comp149300_c1_seq24 tran... [more]
gi|592885103|gb|GAXK01073272.1|2.510e+025.00TSA: Calanus finmarchicus comp149300_c1_seq23 tran... [more]
gi|592885077|gb|GAXK01073298.1|6.897e+027.42TSA: Calanus finmarchicus comp149300_c1_seq49 tran... [more]
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BLAST of EMLSAG00000001526 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000015268.057e-72100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s12626:379... [more]
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BLAST of EMLSAG00000001526 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001526 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001526 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001526 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s12626supercontigLSalAtl2s12626:379..918 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s12626-snap-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001526 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001526EMLSAT00000001526-697373Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s12626:379..918+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001526-684292 ID=EMLSAG00000001526-684292|Name=EMLSAG00000001526|organism=Lepeophtheirus salmonis|type=gene|length=540bp|location=Sequence derived from alignment at LSalAtl2s12626:379..918+ (Lepeophtheirus salmonis)
TTTCATTCTAAAGTTTTACATGAAATTGAATATGATTGGAGTGTTTTTAT
GTTTTGTTTTTCAGTACGATTACTACTTCAAAGTTCGAAACATTTAACAC
TGACTTTGGATTCTTTAAAAAGTACTGAAAAGAGTAAGGTAATAAGAGAT
CATAAATTGAATTAATTAAGTTTTTTATATATAAAACATTATTTTTTATC
CAAGAACTTTTCGTTGTCACATATTGATCTTCATTGGCCATATGAGGAAC
ACTCAATTGATAACATTAAATCCGGTGTAATGGAAATGCAATTGTATTTC
TTTGACTCAAGAAAATTTTGTCATTATGAAGATGCGAACAAAAGCAACAA
CAAAGGATCTATTCCTTCAATCATGGCCATTTCACTCATTTTTAAGGTAA
ATATTTATATAAAACGTTTTCACTGACGACATAAATTGCAACATAATTGA
AGGAAGTATCTCGTCATGTTATTTAGGACTGAAGACTGTAGTCCTGTCGA
GTTCAATCCTGCATGTTAGTCTTAAAAACTTATAAAGTTC
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