EMLSAG00000001542, EMLSAG00000001542-684308 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001542 vs. C. finmarchicus
Match: gi|592780737|gb|GAXK01173831.1| (TSA: Calanus finmarchicus comp1163548_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.274e+0 Identity = 24/86 (27.91%), Postives = 41/86 (47.67%), Query Frame = 0 Query: 38 VVKQIDDH-THATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAI-----RSIGRNIRHILSLKFPNKLKV 117 V K +D H T I PE+++ + + +NN ++++E +A+ + +LP + R GRN IL P+K KV Sbjct: 973 VCKSVDKHATFNRKIKTPEIVEENDTSMNHIVNN------VLNEEPSPTAASPSDRLPGLIDTKCRGCGRNFPRILKHLQPSKFKV 1212
BLAST of EMLSAG00000001542 vs. C. finmarchicus
Match: gi|592877211|gb|GAXK01080509.1| (TSA: Calanus finmarchicus comp3012988_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 1.362e+0 Identity = 27/109 (24.77%), Postives = 54/109 (49.54%), Query Frame = 0 Query: 7 DKTTNQVTPYECELRR-----NACECKAKLHVKN-EEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQ-EIGNVSAAAATQLPAIRSIGRNIRHILS 108 DK T++ +E E + EC++ H + E +ID+H + NI E+LK+Y++V ++ TT++I+ E + S + + +++ R + I+S Sbjct: 420 DKNTDESDEHESEQHESDDANDEKECESDQHDYDMSETDDKIDEHDN-NNITTDEILKMYENVADIDNDDQITTEEILKMYETESESESGVRENDSVQKTTRKRKKIIS 743
BLAST of EMLSAG00000001542 vs. C. finmarchicus
Match: gi|592758054|gb|GAXK01196359.1| (TSA: Calanus finmarchicus comp597809_c0_seq7 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 2.505e+0 Identity = 13/30 (43.33%), Postives = 19/30 (63.33%), Query Frame = 0 Query: 102 NIRHILSLKFPNKLKVTQSCEELLIYDSGL 131 N+ +SLK PN L V Q+CE+ + + GL Sbjct: 265 NVTSKMSLKTPNSLNVDQNCEDRNLVEQGL 354
BLAST of EMLSAG00000001542 vs. L. salmonis peptides
Match: EMLSAP00000001542 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1269:107096:107757:-1 gene:EMLSAG00000001542 transcript:EMLSAT00000001542 description:"maker-LSalAtl2s1269-snap-gene-0.18") HSP 1 Score: 276.944 bits (707), Expect = 1.519e-96 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 Query: 1 MFQRHVDKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRHILSLKFPNKLKVTQSCEELLIYDSGLGD 133 MFQRHVDKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRHILSLKFPNKLKVTQSCEELLIYDSGLGD Sbjct: 1 MFQRHVDKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRHILSLKFPNKLKVTQSCEELLIYDSGLGD 133
BLAST of EMLSAG00000001542 vs. L. salmonis peptides
Match: EMLSAP00000005547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s297:424290:425573:-1 gene:EMLSAG00000005547 transcript:EMLSAT00000005547 description:"augustus_masked-LSalAtl2s297-processed-gene-4.3") HSP 1 Score: 85.8853 bits (211), Expect = 3.662e-21 Identity = 50/128 (39.06%), Postives = 74/128 (57.81%), Query Frame = 0 Query: 20 LRRNACECKAKLHVK-NEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNI-RHILSLK--------------FPNKLKVTQSCEELLIYDSGL 131 +RRN ECKAK+H+ N +V++I++HTHA +IG+ LK+ S+ T + E+ QQI+SQE+ +S LPA+ SI R I RH L+ FP +K T + ++ LIYDSG+ Sbjct: 1 MRRNFRECKAKIHISGNNHIVRRINEHTHAPDIGKANALKVRNSIKRRTEDTGESAQQILSQELFGISEDVTVNLPALPSIRRCIRRHRQQLRNTTPPLPQSRKEIVFPEIMKSTPTGDKFLIYDSGM 128
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675853452|ref|XP_009012286.1| (hypothetical protein HELRODRAFT_184582, partial [Helobdella robusta] >gi|555706383|gb|ESO09616.1| hypothetical protein HELRODRAFT_184582, partial [Helobdella robusta]) HSP 1 Score: 67.0106 bits (162), Expect = 4.481e-11 Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 0 Query: 7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132 D T + T ++C+ +N C+A+LH +++++VK++ +H HA N R EV+K+ + + Q+II+ +S AA+ +P I ++ + IR+ ++ L PN ++T ++ L++DS G Sbjct: 25 DAATEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFIGLSQAASGLMPNISTLKKTIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675859784|ref|XP_009015452.1| (hypothetical protein HELRODRAFT_160216 [Helobdella robusta] >gi|555702851|gb|ESO06084.1| hypothetical protein HELRODRAFT_160216 [Helobdella robusta]) HSP 1 Score: 66.2402 bits (160), Expect = 1.611e-10 Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 0 Query: 7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132 D T + T ++C+ +N C+A+LH +++++VK++ +H HA N R EV+K+ + + Q+II+ ++S AA+ +P I + + IR+ ++ L PN ++T ++ L++DS G Sbjct: 25 DAATEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFISLSQAASGLMPNISILKKTIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675876620|ref|XP_009023870.1| (hypothetical protein HELRODRAFT_177435 [Helobdella robusta] >gi|555694955|gb|ESN98187.1| hypothetical protein HELRODRAFT_177435 [Helobdella robusta]) HSP 1 Score: 66.2402 bits (160), Expect = 1.865e-10 Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 0 Query: 7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132 D T + T ++C+ +N C+A+LH +++++VK++ +H HA N R EV+K+ + + Q+II+ ++S AA+ +P I + + IR+ ++ L PN ++T ++ L++DS G Sbjct: 25 DAATEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFISLSQAASGLMPNISILKKTIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675862274|ref|XP_009016697.1| (hypothetical protein HELRODRAFT_171773 [Helobdella robusta] >gi|555702149|gb|ESO05382.1| hypothetical protein HELRODRAFT_171773 [Helobdella robusta]) HSP 1 Score: 65.4698 bits (158), Expect = 2.479e-10 Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 0 Query: 7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132 D T + T ++C+ +N C+A+LH +++++VK++ +H HA N R EV+K+ + + Q+II+ ++S AA+ +P I + + IR+ ++ L PN ++T ++ L++DS G Sbjct: 25 DAATEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFISLSQAASGLMPNISILKKAIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675857242|ref|XP_009014181.1| (hypothetical protein HELRODRAFT_170116 [Helobdella robusta] >gi|555704337|gb|ESO07570.1| hypothetical protein HELRODRAFT_170116 [Helobdella robusta]) HSP 1 Score: 65.0846 bits (157), Expect = 5.921e-10 Identity = 37/140 (26.43%), Postives = 72/140 (51.43%), Query Frame = 0 Query: 7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132 D T + T ++C+ +N C+A+LH +++++VK++ +H HA N R EV+K+ + + Q+II+ +S AA+ +P I + + IR+ ++ L PN ++T ++ L++DS G Sbjct: 25 DAVTEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFIGLSQAASGLMPNISILKKTIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163
BLAST of EMLSAG00000001542 vs. nr
Match: gi|780180813|ref|XP_011661968.1| (PREDICTED: uncharacterized protein LOC105437262 [Strongylocentrotus purpuratus]) HSP 1 Score: 59.3066 bits (142), Expect = 4.505e-8 Identity = 36/132 (27.27%), Postives = 59/132 (44.70%), Query Frame = 0 Query: 16 YECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLGD 133 +ECELRRN +C+AK+ V + + +H H N GR K+ + + E QQ++ + V+ LP++ ++ RNIR + L+ P ++T E L +DSG D Sbjct: 33 FECELRRNTRQCRAKIKVMGDNQFRDRTEHNHPPNHGRSNATKVKAATKRRATESNERPQQVLMATLCEVTEEGRAALPSLNNMRRNIRRQRQENPNALPIPMTVEDLEIPVDQRLTLGGELFLYHDSGRND 164
BLAST of EMLSAG00000001542 vs. nr
Match: gi|1061463641|gb|ODM87032.1| (hypothetical protein Ocin01_19650 [Orchesella cincta]) HSP 1 Score: 58.151 bits (139), Expect = 9.035e-8 Identity = 33/129 (25.58%), Postives = 67/129 (51.94%), Query Frame = 0 Query: 16 YECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSG 130 + C +R+A +CK + + + EV++ D+H H + + EV + ++ + Q I++ +S++AA +LPA+R++ R+IR+ + +L+ P K ++T E L++DSG Sbjct: 9 WYCIEQRHA-KCKGRAYTAHNEVLRTNDEHNHTPDAAKIEVKTVRANIKFAAKTLSDPPQAIVASFTEKISSSAAAKLPALRTLKRSIRYDRVKAHNSHPIPTSLTTLQLPVKYQLTTKDENFLLFDSG 136
BLAST of EMLSAG00000001542 vs. nr
Match: gi|749718930|gb|KII66875.1| (hypothetical protein RF11_08087 [Thelohanellus kitauei]) HSP 1 Score: 56.225 bits (134), Expect = 9.711e-7 Identity = 42/142 (29.58%), Postives = 70/142 (49.30%), Query Frame = 0 Query: 2 FQRHVDKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRHILS--------------LKFPNKLKVTQSCEELLIYDS 129 F H +++ Q T + C L + C A+ HV N+ V+ +I H HA N E+ KIY +V N +T +IS+ ++S AA LP++++I + ++ I + L P+ KV+ S E LI+D+ Sbjct: 7 FLYHKERSNAQKTVWRCCLY-DKISCPARCHVLNDSVLLEIQKHKHAPNPINIEMKKIYNNVKNIARNTQISTHAVISRGTLSISQAAQGSLPSLQTIKKYVQRIRNRDSSILPNPQTLSQLIIPDIYKVSLSGEVFLIHDN 147 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001542 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001542 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 3
BLAST of EMLSAG00000001542 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000001542 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001542 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001542 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 8
BLAST of EMLSAG00000001542 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1269:107096..107757- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001542-684308 ID=EMLSAG00000001542-684308|Name=EMLSAG00000001542|organism=Lepeophtheirus salmonis|type=gene|length=662bp|location=Sequence derived from alignment at LSalAtl2s1269:107096..107757- (Lepeophtheirus salmonis)back to top Add to Basket
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