EMLSAG00000001542, EMLSAG00000001542-684308 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001542
Unique NameEMLSAG00000001542-684308
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001542 vs. C. finmarchicus
Match: gi|592780737|gb|GAXK01173831.1| (TSA: Calanus finmarchicus comp1163548_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.274e+0
Identity = 24/86 (27.91%), Postives = 41/86 (47.67%), Query Frame = 0
Query:   38 VVKQIDDH-THATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAI-----RSIGRNIRHILSLKFPNKLKV 117
            V K +D H T    I  PE+++   + +   +NN      ++++E    +A+ + +LP +     R  GRN   IL    P+K KV
Sbjct:  973 VCKSVDKHATFNRKIKTPEIVEENDTSMNHIVNN------VLNEEPSPTAASPSDRLPGLIDTKCRGCGRNFPRILKHLQPSKFKV 1212          
BLAST of EMLSAG00000001542 vs. C. finmarchicus
Match: gi|592877211|gb|GAXK01080509.1| (TSA: Calanus finmarchicus comp3012988_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.362e+0
Identity = 27/109 (24.77%), Postives = 54/109 (49.54%), Query Frame = 0
Query:    7 DKTTNQVTPYECELRR-----NACECKAKLHVKN-EEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQ-EIGNVSAAAATQLPAIRSIGRNIRHILS 108
            DK T++   +E E        +  EC++  H  +  E   +ID+H +  NI   E+LK+Y++V     ++  TT++I+   E  + S +   +  +++   R  + I+S
Sbjct:  420 DKNTDESDEHESEQHESDDANDEKECESDQHDYDMSETDDKIDEHDN-NNITTDEILKMYENVADIDNDDQITTEEILKMYETESESESGVRENDSVQKTTRKRKKIIS 743          
BLAST of EMLSAG00000001542 vs. C. finmarchicus
Match: gi|592758054|gb|GAXK01196359.1| (TSA: Calanus finmarchicus comp597809_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.505e+0
Identity = 13/30 (43.33%), Postives = 19/30 (63.33%), Query Frame = 0
Query:  102 NIRHILSLKFPNKLKVTQSCEELLIYDSGL 131
            N+   +SLK PN L V Q+CE+  + + GL
Sbjct:  265 NVTSKMSLKTPNSLNVDQNCEDRNLVEQGL 354          
BLAST of EMLSAG00000001542 vs. L. salmonis peptides
Match: EMLSAP00000001542 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1269:107096:107757:-1 gene:EMLSAG00000001542 transcript:EMLSAT00000001542 description:"maker-LSalAtl2s1269-snap-gene-0.18")

HSP 1 Score: 276.944 bits (707), Expect = 1.519e-96
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MFQRHVDKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRHILSLKFPNKLKVTQSCEELLIYDSGLGD 133
            MFQRHVDKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRHILSLKFPNKLKVTQSCEELLIYDSGLGD
Sbjct:    1 MFQRHVDKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRHILSLKFPNKLKVTQSCEELLIYDSGLGD 133          
BLAST of EMLSAG00000001542 vs. L. salmonis peptides
Match: EMLSAP00000005547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s297:424290:425573:-1 gene:EMLSAG00000005547 transcript:EMLSAT00000005547 description:"augustus_masked-LSalAtl2s297-processed-gene-4.3")

HSP 1 Score: 85.8853 bits (211), Expect = 3.662e-21
Identity = 50/128 (39.06%), Postives = 74/128 (57.81%), Query Frame = 0
Query:   20 LRRNACECKAKLHVK-NEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNI-RHILSLK--------------FPNKLKVTQSCEELLIYDSGL 131
            +RRN  ECKAK+H+  N  +V++I++HTHA +IG+   LK+  S+   T +  E+ QQI+SQE+  +S      LPA+ SI R I RH   L+              FP  +K T + ++ LIYDSG+
Sbjct:    1 MRRNFRECKAKIHISGNNHIVRRINEHTHAPDIGKANALKVRNSIKRRTEDTGESAQQILSQELFGISEDVTVNLPALPSIRRCIRRHRQQLRNTTPPLPQSRKEIVFPEIMKSTPTGDKFLIYDSGM 128          
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675853452|ref|XP_009012286.1| (hypothetical protein HELRODRAFT_184582, partial [Helobdella robusta] >gi|555706383|gb|ESO09616.1| hypothetical protein HELRODRAFT_184582, partial [Helobdella robusta])

HSP 1 Score: 67.0106 bits (162), Expect = 4.481e-11
Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 0
Query:    7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132
            D  T + T ++C+  +N   C+A+LH +++++VK++ +H HA N  R EV+K+   +        +  Q+II+     +S AA+  +P I ++ + IR+              ++ L  PN  ++T   ++ L++DS  G
Sbjct:   25 DAATEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFIGLSQAASGLMPNISTLKKTIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163          
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675859784|ref|XP_009015452.1| (hypothetical protein HELRODRAFT_160216 [Helobdella robusta] >gi|555702851|gb|ESO06084.1| hypothetical protein HELRODRAFT_160216 [Helobdella robusta])

HSP 1 Score: 66.2402 bits (160), Expect = 1.611e-10
Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 0
Query:    7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132
            D  T + T ++C+  +N   C+A+LH +++++VK++ +H HA N  R EV+K+   +        +  Q+II+    ++S AA+  +P I  + + IR+              ++ L  PN  ++T   ++ L++DS  G
Sbjct:   25 DAATEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFISLSQAASGLMPNISILKKTIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163          
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675876620|ref|XP_009023870.1| (hypothetical protein HELRODRAFT_177435 [Helobdella robusta] >gi|555694955|gb|ESN98187.1| hypothetical protein HELRODRAFT_177435 [Helobdella robusta])

HSP 1 Score: 66.2402 bits (160), Expect = 1.865e-10
Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 0
Query:    7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132
            D  T + T ++C+  +N   C+A+LH +++++VK++ +H HA N  R EV+K+   +        +  Q+II+    ++S AA+  +P I  + + IR+              ++ L  PN  ++T   ++ L++DS  G
Sbjct:   25 DAATEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFISLSQAASGLMPNISILKKTIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163          
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675862274|ref|XP_009016697.1| (hypothetical protein HELRODRAFT_171773 [Helobdella robusta] >gi|555702149|gb|ESO05382.1| hypothetical protein HELRODRAFT_171773 [Helobdella robusta])

HSP 1 Score: 65.4698 bits (158), Expect = 2.479e-10
Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 0
Query:    7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132
            D  T + T ++C+  +N   C+A+LH +++++VK++ +H HA N  R EV+K+   +        +  Q+II+    ++S AA+  +P I  + + IR+              ++ L  PN  ++T   ++ L++DS  G
Sbjct:   25 DAATEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFISLSQAASGLMPNISILKKAIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163          
BLAST of EMLSAG00000001542 vs. nr
Match: gi|675857242|ref|XP_009014181.1| (hypothetical protein HELRODRAFT_170116 [Helobdella robusta] >gi|555704337|gb|ESO07570.1| hypothetical protein HELRODRAFT_170116 [Helobdella robusta])

HSP 1 Score: 65.0846 bits (157), Expect = 5.921e-10
Identity = 37/140 (26.43%), Postives = 72/140 (51.43%), Query Frame = 0
Query:    7 DKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLG 132
            D  T + T ++C+  +N   C+A+LH +++++VK++ +H HA N  R EV+K+   +        +  Q+II+     +S AA+  +P I  + + IR+              ++ L  PN  ++T   ++ L++DS  G
Sbjct:   25 DAVTEEKTFWKCDQYQNLV-CRARLHTRHDKIVKRVGEHNHAGNAARVEVVKVVNQMKNDARETQDVPQRIITNSFIGLSQAASGLMPNISILKKTIRNTRRLADRAPPNPNSLVDLVIPNDYQITHHDDQFLMFDSNDG 163          
BLAST of EMLSAG00000001542 vs. nr
Match: gi|780180813|ref|XP_011661968.1| (PREDICTED: uncharacterized protein LOC105437262 [Strongylocentrotus purpuratus])

HSP 1 Score: 59.3066 bits (142), Expect = 4.505e-8
Identity = 36/132 (27.27%), Postives = 59/132 (44.70%), Query Frame = 0
Query:   16 YECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSGLGD 133
            +ECELRRN  +C+AK+ V  +   +   +H H  N GR    K+  +       + E  QQ++   +  V+      LP++ ++ RNIR               +  L+ P   ++T   E  L +DSG  D
Sbjct:   33 FECELRRNTRQCRAKIKVMGDNQFRDRTEHNHPPNHGRSNATKVKAATKRRATESNERPQQVLMATLCEVTEEGRAALPSLNNMRRNIRRQRQENPNALPIPMTVEDLEIPVDQRLTLGGELFLYHDSGRND 164          
BLAST of EMLSAG00000001542 vs. nr
Match: gi|1061463641|gb|ODM87032.1| (hypothetical protein Ocin01_19650 [Orchesella cincta])

HSP 1 Score: 58.151 bits (139), Expect = 9.035e-8
Identity = 33/129 (25.58%), Postives = 67/129 (51.94%), Query Frame = 0
Query:   16 YECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRH--------------ILSLKFPNKLKVTQSCEELLIYDSG 130
            + C  +R+A +CK + +  + EV++  D+H H  +  + EV  +  ++        +  Q I++     +S++AA +LPA+R++ R+IR+              + +L+ P K ++T   E  L++DSG
Sbjct:    9 WYCIEQRHA-KCKGRAYTAHNEVLRTNDEHNHTPDAAKIEVKTVRANIKFAAKTLSDPPQAIVASFTEKISSSAAAKLPALRTLKRSIRYDRVKAHNSHPIPTSLTTLQLPVKYQLTTKDENFLLFDSG 136          
BLAST of EMLSAG00000001542 vs. nr
Match: gi|749718930|gb|KII66875.1| (hypothetical protein RF11_08087 [Thelohanellus kitauei])

HSP 1 Score: 56.225 bits (134), Expect = 9.711e-7
Identity = 42/142 (29.58%), Postives = 70/142 (49.30%), Query Frame = 0
Query:    2 FQRHVDKTTNQVTPYECELRRNACECKAKLHVKNEEVVKQIDDHTHATNIGRPEVLKIYQSVICCTINNMETTQQIISQEIGNVSAAAATQLPAIRSIGRNIRHILS--------------LKFPNKLKVTQSCEELLIYDS 129
            F  H +++  Q T + C L  +   C A+ HV N+ V+ +I  H HA N    E+ KIY +V     N   +T  +IS+   ++S AA   LP++++I + ++ I +              L  P+  KV+ S E  LI+D+
Sbjct:    7 FLYHKERSNAQKTVWRCCLY-DKISCPARCHVLNDSVLLEIQKHKHAPNPINIEMKKIYNNVKNIARNTQISTHAVISRGTLSISQAAQGSLPSLQTIKKYVQRIRNRDSSILPNPQTLSQLIIPDIYKVSLSGEVFLIHDN 147          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001542 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001542 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592780737|gb|GAXK01173831.1|1.274e+027.91TSA: Calanus finmarchicus comp1163548_c0_seq1 tran... [more]
gi|592877211|gb|GAXK01080509.1|1.362e+024.77TSA: Calanus finmarchicus comp3012988_c0_seq1 tran... [more]
gi|592758054|gb|GAXK01196359.1|2.505e+043.33TSA: Calanus finmarchicus comp597809_c0_seq7 trans... [more]
back to top
BLAST of EMLSAG00000001542 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000015421.519e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1269:1070... [more]
EMLSAP000000055473.662e-2139.06pep:novel supercontig:LSalAtl2s:LSalAtl2s297:42429... [more]
back to top
BLAST of EMLSAG00000001542 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001542 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001542 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 8
Match NameE-valueIdentityDescription
gi|675853452|ref|XP_009012286.1|4.481e-1126.43hypothetical protein HELRODRAFT_184582, partial [H... [more]
gi|675859784|ref|XP_009015452.1|1.611e-1026.43hypothetical protein HELRODRAFT_160216 [Helobdella... [more]
gi|675876620|ref|XP_009023870.1|1.865e-1026.43hypothetical protein HELRODRAFT_177435 [Helobdella... [more]
gi|675862274|ref|XP_009016697.1|2.479e-1026.43hypothetical protein HELRODRAFT_171773 [Helobdella... [more]
gi|675857242|ref|XP_009014181.1|5.921e-1026.43hypothetical protein HELRODRAFT_170116 [Helobdella... [more]
gi|780180813|ref|XP_011661968.1|4.505e-827.27PREDICTED: uncharacterized protein LOC105437262 [S... [more]
gi|1061463641|gb|ODM87032.1|9.035e-825.58hypothetical protein Ocin01_19650 [Orchesella cinc... [more]
gi|749718930|gb|KII66875.1|9.711e-729.58hypothetical protein RF11_08087 [Thelohanellus kit... [more]
back to top
BLAST of EMLSAG00000001542 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1269supercontigLSalAtl2s1269:107096..107757 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1269-snap-gene-0.18
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein HELRODRAFT_184582, partial [Helobdella robusta]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001542 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001542EMLSAT00000001542-697389Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1269:107096..107757-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001542-684308 ID=EMLSAG00000001542-684308|Name=EMLSAG00000001542|organism=Lepeophtheirus salmonis|type=gene|length=662bp|location=Sequence derived from alignment at LSalAtl2s1269:107096..107757- (Lepeophtheirus salmonis)
ATGTTTCAACGACATGTTGACAAAACCAGTAAGTTTTATGTAAAAATGTG GCTTCCCATATTTTTTCTAAGCATCAACTTCGTACATGCCTAGTTGCATT AAAATTAGGTACTTTATTTTAGTAATTTACTTTTTTACAAATATAATTCA TTCGTACTCAGTTACATTTTAATAATAGATTTCATAACACTCTCACGAGG AAGCATTGTATGAGGGCTTTATATATGCAAAGCAAAAGAATTTAGCTAAC CAAGTAACGCCATATGAGTGTGAATTGAGGAGGAACGCTTGTGAATGTAA AGCCAAACTCCATGTAAAGAATGAGGAGGTGGTGAAGCAGATCGATGATC ACACTCATGCCACTAATATTGGGAGACCTGAGGTGCTGAAAATTTATCAA TCTGTTATATGCTGCACCATTAATAACATGGAAACCACCCAACAAATCAT TTCACAAGAAATAGGAAATGTTTCAGCTGCGGCTGCAACACAGCTTCCAG CAATTAGGAGCATTGGGCGAAATATTCGGCATATCCGTCAGACTTTTGGA AATCCCTCATCCATTCCTATAAACTTTAGTTAGTTTAAAGTTCCCAAACA AATTAAAAGTAACTCAATCTTGTGAGGAACTCCTAATTTACGATAGTGGT CTGGGAGATTAA
back to top
Add to Basket