EMLSAG00000001672, EMLSAG00000001672-684438 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001672
Unique NameEMLSAG00000001672-684438
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001672 vs. C. finmarchicus
Match: gi|592812303|gb|GAXK01142265.1| (TSA: Calanus finmarchicus comp100137_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.012e+0
Identity = 15/41 (36.59%), Postives = 18/41 (43.90%), Query Frame = 0 
Query:   25 SYNSATCQKVIPSPPVRDARNMRIDVEIKLSPDALQQPMSP 65
            S   A CQ  +   P + A N +  V I L  D  QQP  P
Sbjct:  555 SMKRAACQVAMAQAPTKAANNWKAAVAISLLDDWFQQPDKP 677
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BLAST of EMLSAG00000001672 vs. C. finmarchicus
Match: gi|592809201|gb|GAXK01145367.1| (TSA: Calanus finmarchicus comp58584_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.210e+0
Identity = 14/41 (34.15%), Postives = 26/41 (63.41%), Query Frame = 0 
Query:   21 HATNSY-NSATCQKVIPSPPV-RDARNMRIDVEIKLSPDAL 59
            H+ + Y ++  C+  IPS  +  + +N+ ID+ ++LSP AL
Sbjct:  395 HSVDDYTHNLQCEYYIPSFQLTENTKNICIDITVRLSPHAL 517
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BLAST of EMLSAG00000001672 vs. L. salmonis peptides
Match: EMLSAP00000001672 (pep:novel supercontig:LSalAtl2s:LSalAtl2s128:661951:662378:-1 gene:EMLSAG00000001672 transcript:EMLSAT00000001672 description:"maker-LSalAtl2s128-snap-gene-6.34")

HSP 1 Score: 152.91 bits (385), Expect = 1.174e-49
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:    1 MQSEEERKNKLEAKVNTTPIHATNSYNSATCQKVIPSPPVRDARNMRIDVEIKLSPDALQQPMSPDTQATPVNIK 75
            MQSEEERKNKLEAKVNTTPIHATNSYNSATCQKVIPSPPVRDARNMRIDVEIKLSPDALQQPMSPDTQATPVNIK
Sbjct:    1 MQSEEERKNKLEAKVNTTPIHATNSYNSATCQKVIPSPPVRDARNMRIDVEIKLSPDALQQPMSPDTQATPVNIK 75
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001672 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001672 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592812303|gb|GAXK01142265.1|1.012e+036.59TSA: Calanus finmarchicus comp100137_c1_seq1 trans... [more]
gi|592809201|gb|GAXK01145367.1|1.210e+034.15TSA: Calanus finmarchicus comp58584_c0_seq2 transc... [more]
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BLAST of EMLSAG00000001672 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000016721.174e-49100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s128:66195... [more]
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BLAST of EMLSAG00000001672 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001672 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001672 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001672 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s128supercontigLSalAtl2s128:661951..662378 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s128-snap-gene-6.34
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001672 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001672EMLSAT00000001672-697519Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s128:661951..662378-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001672-684438 ID=EMLSAG00000001672-684438|Name=EMLSAG00000001672|organism=Lepeophtheirus salmonis|type=gene|length=428bp|location=Sequence derived from alignment at LSalAtl2s128:661951..662378- (Lepeophtheirus salmonis)
ATGCAGAGCGAAGAGGAGAGAAAGAATAAACTAGAAGCCAAAGTGAACAC
CACTCCAATCCATGCGACCAAGTAAGACCATCCCACAGAGTAATGCGTTG
CTTTTTGCAAATAATCTGGCCATGTTAGAAAGAACTCAAGCTTCTCATCC
TTTACCTAAAAATATGTAGAGAGAATGTGTAGGCGATTATTAAATAGACA
AAGATCCATTGATTAATTATTTATTAATTTATGGACCCATGCTTTTAAAT
TAATTTCCTTACTTTTTCAAGTTCATATAATTCCGCAACGTGCCAGAAAG
TCATTCCGAGTCCTCCTGTGAGAGATGCTAGAAACATGAGAATTGACGTA
GAAATTAAATTATCCCCTGATGCTCTCCAACAGCCAATGAGCCCAGACAC
ACAGGCAACTCCAGTTAACATAAAGTAG
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