EMLSAG00000001728, EMLSAG00000001728-684494 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001728
Unique NameEMLSAG00000001728-684494
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001728 vs. C. finmarchicus
Match: gi|592860975|gb|GAXK01096587.1| (TSA: Calanus finmarchicus comp55682_c5_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 6.991e+0
Identity = 14/49 (28.57%), Postives = 25/49 (51.02%), Query Frame = 0 
Query:   37 DCLHAVVEFLDPTADVVYCNGVLVLAYIVFEGLGVWMMDTACLPLDMHP 85
            +CLH +++  DP   ++ C  +L+L ++ F  L           LD+HP
Sbjct:  544 ECLHLILQLFDPPGCILICKPLLLL-FLCFRHL-----------LDLHP 654
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BLAST of EMLSAG00000001728 vs. C. finmarchicus
Match: gi|592860980|gb|GAXK01096582.1| (TSA: Calanus finmarchicus comp55682_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 7.983e+0
Identity = 14/49 (28.57%), Postives = 25/49 (51.02%), Query Frame = 0 
Query:   37 DCLHAVVEFLDPTADVVYCNGVLVLAYIVFEGLGVWMMDTACLPLDMHP 85
            +CLH +++  DP   ++ C  +L+L ++ F  L           LD+HP
Sbjct:  775 ECLHLILQLFDPPGCILICQPLLLL-FLCFRHL-----------LDLHP 885
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BLAST of EMLSAG00000001728 vs. L. salmonis peptides
Match: EMLSAP00000001728 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1299:82753:84795:-1 gene:EMLSAG00000001728 transcript:EMLSAT00000001728 description:"snap-LSalAtl2s1299-processed-gene-0.63")

HSP 1 Score: 283.493 bits (724), Expect = 5.499e-99
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 
Query:    1 MLRSSIKRLKKRVSSGLLVRKFANRRLQNIVALSSNDCLHAVVEFLDPTADVVYCNGVLVLAYIVFEGLGVWMMDTACLPLDMHPKDINFFVSLVALLSLQHFGLADGVDDGNGDAQVLGMREWKFVDQIYVSFSRFVR 139
            MLRSSIKRLKKRVSSGLLVRKFANRRLQNIVALSSNDCLHAVVEFLDPTADVVYCNGVLVLAYIVFEGLGVWMMDTACLPLDMHPKDINFFVSLVALLSLQHFGLADGVDDGNGDAQVLGMREWKFVDQIYVSFSRFVR
Sbjct:    1 MLRSSIKRLKKRVSSGLLVRKFANRRLQNIVALSSNDCLHAVVEFLDPTADVVYCNGVLVLAYIVFEGLGVWMMDTACLPLDMHPKDINFFVSLVALLSLQHFGLADGVDDGNGDAQVLGMREWKFVDQIYVSFSRFVR 139
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BLAST of EMLSAG00000001728 vs. L. salmonis peptides
Match: EMLSAP00000008963 (pep:novel supercontig:LSalAtl2s:LSalAtl2s559:4705:11765:-1 gene:EMLSAG00000008963 transcript:EMLSAT00000008963 description:"snap-LSalAtl2s559-processed-gene-0.17")

HSP 1 Score: 50.0618 bits (118), Expect = 6.017e-9
Identity = 31/84 (36.90%), Postives = 43/84 (51.19%), Query Frame = 0 
Query:   39 LHAVVEFLDPTADVVYCNGVLVLAYIVFEGLGVWMMDTACLPLDMHPKDINFFVSLVALLSLQHFGLADGVDDGNGDAQVLGMR 122
            +H + E L PTAD V   GVL+LAYIVFE LG+ ++     P                 L LQ   +AD V+   GD Q++G++
Sbjct:   28 IHELTEGLVPTADAVLYYGVLLLAYIVFEDLGIGLLSHFSRP----------------FLPLQRSRIADSVERAPGDVQMMGVQ 95
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001728 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001728 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592860975|gb|GAXK01096587.1|6.991e+028.57TSA: Calanus finmarchicus comp55682_c5_seq1 transc... [more]
gi|592860980|gb|GAXK01096582.1|7.983e+028.57TSA: Calanus finmarchicus comp55682_c0_seq3 transc... [more]
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BLAST of EMLSAG00000001728 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000017285.499e-99100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1299:8275... [more]
EMLSAP000000089636.017e-936.90pep:novel supercontig:LSalAtl2s:LSalAtl2s559:4705:... [more]
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BLAST of EMLSAG00000001728 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001728 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001728 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001728 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1299supercontigLSalAtl2s1299:82753..84795 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1299-processed-gene-0.63
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001728 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001728EMLSAT00000001728-697575Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1299:82753..84795-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001728-684494 ID=EMLSAG00000001728-684494|Name=EMLSAG00000001728|organism=Lepeophtheirus salmonis|type=gene|length=2043bp|location=Sequence derived from alignment at LSalAtl2s1299:82753..84795- (Lepeophtheirus salmonis)
ATGTTGAGATCTTCAATAAAGAGGCTAAAGAAAAGGGTCTCGAGTGGACT
CTTGGTGAGGAAATTCGCAAATCGGAGGTAAGAACCCCCCTTTGGGATCC
TTTTATAATATTGTTATCCTAGCTAAATCTTCCTTCAAATTAACTCCAGT
TTGAATAACAGGATCCTTAATTTTGATTCTTATCATAGCCAGTGCTTTCT
TCGGCTACGTTTTCCCTTAAGGGCAAATGTATTTTTGAGGGACGACTGTT
ATTACTAACCTATTTTCAGTTGTCCTAGGCATTGCGGACGAAATCGTTGT
ATAACTTTGAGGATGTTTCAAAGTGGATAAAGACGATTTATTTATTCTTC
ATTATCATATCCCCCTTTTGTTCTTCTGTAGGTGTTAAGGCAAATATTAT
TTTATCTTACTCTACAAGTTTTTATAGACTCAGGGAATTACTATAAAGTG
CCTTTAGACACCCACTATACTTTTAAGGACGCCTTAAGCCGTTTTCTCTA
AGAAAATAGTTTCGATATGTACAATGGAGTGTTGAATGATTTTACGATAT
GTAGCCCGTCAACATCAAAATAAGCTAACGGGAGTTGTTTTTTTTCAAAA
TTAAGTGTGAATTACATTACAATAATCTTCCATCAACAAATATTCTTATT
AAACCTTTGGGTGCGCCACTAATTCTACTTAAAGTCGTGACCATTGATCA
TCAAAAATAAAAAAAATAGAAATTGATAGATTTAATGATTGAAAGGGGTA
ATATTGCGGCCAATATAAGTTTTTTAAATCAAATAAAGGCTCCAAAATAT
AGGTAAAATTCTTGGGCATGCTTACTTATCCCACAACTTTGAATACAATG
TCTAAATTTGACTAAAATATGTCTTATAAGATATTTTCATATATGTAATA
AATTGTGATTTTCTACTTCCTTTAATTTTTCTTCAAGATTGTTTTTAGGT
TGACACACAACATGTATACCCTTAAGGATAAAATCGAAAGTTCAGCGCCA
AATTGACGTAACTCTAAAAATACAAATATTAGTCATATAGCCTAAACGAC
ATCCTAATAATTAAAAGCAGAGAAATTCAGACTGATAAAAGGAATTATTT
CTTAGATCCATTTTATTGTAAAAGTGAGACATTATTCAATGGAGTTTCTA
TGCATAATTATGTGAAGTTTAATATTTGAGTTACGAACATTTGGCTCCGA
AAAAAATGAACTTCATCATGGTTGATTTCAAAACAAATGACAAAACAAAG
TCAAAATTAATGGTTTTTTGAAAATAATTCTCTTGTGAACCTCTTAATAT
TGTTCAAATTTAACTGAAATTTTCTATGGGATTATTGCCTGTATCATATT
CATATTTAACTGTGGAAACAGAAACTTTGTTGTCCAGCTCTGAAATTTGA
TCTGTAGTCATATTTTATCACGTAACAAATTTTATTACTTATCCGATTAG
CATATTAAACTTCTAAGAAAAAACAGCAAACCTTAAACCAGTCATCATAA
TGGGACTCAGTGGTTCATTAAAATCTGAACACTTTGAATATAATTTATTA
ATTAACAATTGAATTTTAACAAAAATAATACTATAAATAGATGTGTGTCT
AAGATTTCTAAATCAATAATGTAGTCGCCCTTAGCAGCAATGATTGCTTA
CATGCGGTGGTGGAATTCCTAGATCCCACTGCGGATGTAGTCTACTGTAA
TGGCGTCCTAGTGCTGGCTTACATTGTCTTTGAGGGTCTCGGTGTTTGGA
TGATGGACACTGCATGCCTTCCCCTCGACATGCACCCAAAAGATATCAAC
TTTTTTGTCAGTCTGGTGTGAAACACCGAAATCTCTTGGATGGGGCCTCA
TGGACTTGAGGGGATTGACCTGGGCGGTATTCTTCAACTTCTTGGCCTTT
TTTACAGAGCCCTTCTTTCTCTACAACATTTCGGACTTGCTGACGGCGTA
GATGATGGTAATGGAGACGCCCAAGTGCTTGGAATGCGTGAATGGAAATT
CGTTGATCAAATTTATGTGTCATTTTCTCGATTTGTACGTTAG
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