EMLSAG00000001746, EMLSAG00000001746-684512 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001746
Unique NameEMLSAG00000001746-684512
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Match: gi|592846817|gb|GAXK01110727.1| (TSA: Calanus finmarchicus comp774188_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 114.775 bits (286), Expect = 8.344e-27
Identity = 86/312 (27.56%), Postives = 146/312 (46.79%), Query Frame = 0
Query:   45 DVFSHEDKLPISQGDKI-VAMSLCWPILGG-DKKDEFPIIAVTLKGAEVWLNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGHTLNLKKVPLWEVDXXXXXXXXXXXXXXXXPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSG-YSTCD----LHHPLKNIDGYPCSIWKFMPWEREKDIVNKQLEILSGIKPRH 349
            +  SH   +  S   K+ + M LCW        KD FP     L+  ++W  +T   +   +V+    P   L  +      L+     V L  S ++ C L +QL R+ AF+     DEDVI+T++VD + + P +L  L   +    VW++ Y+ T+  G  F + +IG   KTWK ++  + +   +   +   ++L     W+VD+ I+S  I+ ++LC L +   +W       AE +  P  F D +TC+HGSG +  C+      + +    G  C  W F+P E  +++ +K  EI+ G    H
Sbjct:  441 EYISHTKSVTNSSNSKVWITMGLCWGENAHVHGKDNFPYSEAALRSIQLWHKMTNATVIMQLVHNETEPSKDLLSYK---ARLESFGARVSLFQSLDLPCVLTSQLVRLLAFQKEFVEDEDVIITADVDAFIMTPEILRPL---KKKVSVWIWRYELTYHMGYTFMMPFIGARSKTWKSMLWYNGSLSSMVSHYRDLMDLSTDYTWDVDQHIVSYAIISNKLCGLQKSNKLW-------AELKLKPEPFPDMKTCWHGSGIFEDCNNQLWSRNAMIKYQGGGCKWWHFLPREGVQELEDKFQEIMGGDANNH 1337          
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Match: gi|592815887|gb|GAXK01138681.1| (TSA: Calanus finmarchicus comp511364_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 88.1965 bits (217), Expect = 1.601e-18
Identity = 79/289 (27.34%), Postives = 134/289 (46.37%), Query Frame = 0
Query:   62 VAMSLCWPILGG-DKKDEFPIIAVTLKGAEVW-LNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFR----SGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGHTLNLKK---VPLWEVDXXXXXXXXXXXXXXXXPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIWKFMPWEREKDIVNKQLEI 341
            V+M LC+        K+ +P  AVT     +W  +L  V     IVY  K+   K+  +    + L+     V+ L + +MDC LK+QL R+FA        +D+++T +V+++ + P +LH + V       W+  Y+ T       G  F+   I M  KTW  + G      EL E +   L L        W  D+LI +  +L S++C++P++  +W M  L     +++P    D  TC+HG G+  C++ +         C  W F P++R  + + K  E+
Sbjct:   76 VSMGLCYSANANHSGKNHYPYKAVTPLALLLWRYHLPEVSTIVRIVYTEKKITAKMTAYG---EMLERAGAVVEWLEAGDMDCVLKSQLVRLFAGEHPLVMPDDIVMTVDVNLFVMTPDILHPI-VSSPGMIAWVPQYEETASIPTGRGETFNQNLIAMKAKTWLNITGYKGNLTELVERYKRDLGLLAELGKSTWYYDQLITTHALLSSKICTVPKESGLWKMPGL-----KFDPS-LADGATCWHGRGFGDCNISNIGVRKTYKGCKWWHFFPFQRMSEHIEKFYEL 912          
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Match: gi|592934782|gb|GAXK01023771.1| (TSA: Calanus finmarchicus comp976042_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 85.8853 bits (211), Expect = 1.248e-17
Identity = 90/324 (27.78%), Postives = 146/324 (45.06%), Query Frame = 0
Query:   34 LFIIEEDIYFNDVFSHEDKLPISQGDKIVAMSLCWP----ILGGDKKDEFPIIAVTLKGAEVWLNLT--TVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPEELY------ETFGHTLNLKKVPL-WEVDXXXXXXXXXXXXXXXXPEDLPIWTMVELEDA--ERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIWKFMPWEREKDIVNKQLEIL 342
            L+ +     F+     E+ +P  Q    V+MSLCW     I G   K  FP        +++W N+T   V++  +IV+        L  + + L+    L V   L  +    C L++QL R+F F + +   ED+I+ S+VDI+ +   +   LD  +   + W++ Y  T R G  F+++ IGM  K W++++  S    E Y      + F  TL      L W  D+ ILS  IL    CSLP + P+W  + L  A    ++ P+       C+HG    TC   H  + +    C  W F P E  +++  K  +I+
Sbjct:  210 LYYVTISGQFDSTSDREESIPTPQ--IWVSMSLCWAENAQIYG---KHNFPYDHAAELSSKLWRNITDGEVRVALTIVHSDLTYGSDLQSYKDSLEREGVLVV---LEKAGSTGCVLQSQLSRMFLFTNPAIEAEDIILVSDVDIFIMDRRI---LDPLKKPFRTWIYSYGLTEREGYTFAMSIIGMRAKDWREILDYSHVGIEGYNISDIVQHFNKTLGFTSSSLTWGADQAILSYSILSRGFCSLPPENPLWKTLALTPASPSAKYAPL-------CYHGQ-EETC---HKKRTVVPRGCLWWHFHPDETIENLNRKYNQIM 1115          
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Match: gi|592815888|gb|GAXK01138680.1| (TSA: Calanus finmarchicus comp511364_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 79.7221 bits (195), Expect = 1.685e-15
Identity = 76/289 (26.30%), Postives = 131/289 (45.33%), Query Frame = 0
Query:   62 VAMSLCWPILG-GDKKDEFPIIAVTLKGAEVW-LNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFR----SGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGHTLNLKK---VPLWEVDXXXXXXXXXXXXXXXXPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIWKFMPWEREKDIVNKQLEI 341
             +M LC+      + K  +P   VT     +W  +L  V     IVY  K+    +  +    + L+     V+ L + +MDC LK+QL R+FA        +D+++T +V+++ + P +LH + V       W+  Y+ T       G  F+   I M  KTW  + G      EL E +   L L        W  D+LI +  +L S++C++P++  +W M  L     +++P    D  TC+HG G+  C++ +         C  W F P++R  + + K  E+
Sbjct:   76 ASMGLCYSENARNNGKSNYPYKDVTPLSLLLWRYHLPEVSTIVRIVYTEKKLNEMMTAYG---EMLERAGAVVEWLEAGDMDCVLKSQLVRLFAGEHPLVMPDDIVMTVDVNLFVMTPDILHPI-VSSPGMIAWVPQYEETASIPTGRGETFNQNLIAMKAKTWLNITGYKGNLTELVERYKRDLGLLAELGKSTWYYDQLITTHALLSSKICTVPKESGLWKMPGL-----KFDPS-LADGATCWHGRGFGDCNISNIGVRKTYKGCKWWHFFPFQRMSEHIEKFYEL 912          
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Match: gi|592947156|gb|GAXK01011397.1| (TSA: Calanus finmarchicus comp23682_c5_seq1 transcribed RNA sequence)

HSP 1 Score: 70.0922 bits (170), Expect = 2.951e-12
Identity = 70/282 (24.82%), Postives = 124/282 (43.97%), Query Frame = 0
Query:   62 VAMSLCWPILGGDKKDEFPIIAVTLKGAEVWLNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSE-MDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGH-----TLNLKKVPLWEVDXXXXXXXXXXXXXXXXPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIW--KFMPWEREKDIV 335
            ++MS C        K  +   A  +    +W+NL   K+  ++V        ++    N L  +  +   V+++   E + C L AQ  R+ AF      D D+I+ ++ D++P     L  L  Y  ++ VW++ ++        F ++ + M  KTW +L+  S + +EL +  G      T     +  WEVD+ + +  IL+S LCS P +  +WT + L+       P    +  TC+HG G+  C     ++   G P   W    +P E  + IV
Sbjct:  203 ISMSTCMSA-SAPHKAHYSYQAGAVLATFLWVNLVNAKVIVTLVAEETDDDDEIKYLQNVLTKMGAV---VNIMKKEEDIGCVLMAQTARMLAFNLPMVSDNDIIMMADTDMFPTDHRFLDPL--YHNYQ-VWVYWWEAVVFLNESFPMSMLAMEAKTWSRLLNYSTSVKELSKLPGSGQRVFTEQGDTMDTWEVDQSVTTTAILKSGLCSAPGNSSLWTKLGLK-------PENHIERATCWHGQGWGQCRASLGMQYYPGMPGCTWWHALLPREFLEHIV 1006          
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Match: gi|592767743|gb|GAXK01186825.1| (TSA: Calanus finmarchicus comp1504810_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.9138 bits (128), Expect = 1.787e-7
Identity = 41/168 (24.40%), Postives = 78/168 (46.43%), Query Frame = 0
Query:   62 VAMSLCW----PILGGDKKDEFPIIAVTLKGAEVWLNLT--TVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSG-NLFSITYIGMTVKTWKKL 222
            ++MS+C+     I G   K ++P          +W  ++   V +  +IVY        L ++     G++ + +  +   S+ + C L++QL RIFAF      D+D+I+TS+VD + +   +L  L   R     W++ Y    + G    ++  +GM  K W+ +
Sbjct:  167 LSMSVCFGENAQIHG---KGQYPYTYAATLSTRLWREVSDGEVNVLLTIVYNNDVNNSALEEYVESFDGVEGVLIQRE--QSTSLGCVLQSQLSRIFAFDHKIMNDDDIILTSDVDTFVMDKRILEPL---RRPFLTWVYEYQFINQEGWTTLNMNLLGMRAKDWRVM 646          
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Match: gi|592912532|gb|GAXK01045843.1| (TSA: Calanus finmarchicus comp1094745_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 9.909e-2
Identity = 41/208 (19.71%), Postives = 78/208 (37.50%), Query Frame = 0
Query:  141 DCHLKAQLQRIFAFR----DNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGHTL----------------NLKKVPLWEVDXXXXXXXX----XXXXXXXXPEDLPIWTMVELE-DAERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIW 323
            DC L   + R+         N  +++ +++ + V  Y  K  +L   +V ++    W+F+ +        F   +I MTV+ WK +   S +  +L     H +                N   V   ++D ++    +        L      +P W  V +   AE  ++P +F D + C+ G G ++C       +  G P   W
Sbjct:  211 DCALGHGIGRVLLHTLPELKNQIKNDSIVMLTNVGAYLSKGEIL---NVLQSGHNTWMFNAEAVLYGHQPFPTNFIAMTVEKWKTITYNSLSCSDLVTRDSHLVADYKPPWVVYREEEPDNSTDVDTRDIDIMMAVGAVEKFITRRSLMLRHCTVPDWNKVWISLGAEAGFDPNFF-DRDVCWKGMGMASCSNSMGYWHYPGMPGCRW 822          
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Match: gi|592832121|gb|GAXK01125423.1| (TSA: Calanus finmarchicus comp24010_c0_seq23 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 9.673e+0
Identity = 15/50 (30.00%), Postives = 24/50 (48.00%), Query Frame = 0
Query:   97 TVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKA 146
             + L+ S+  P   PP  L       KG++ L   + LLP+  + CH+ A
Sbjct:  175 VMALYVSLE*PDSDPPRALLVLTGIGKGMEALEAKLSLLPTDSLLCHMLA 324          
BLAST of EMLSAG00000001746 vs. L. salmonis peptides
Match: EMLSAP00000001746 (pep:novel supercontig:LSalAtl2s:LSalAtl2s12:12926:16942:1 gene:EMLSAG00000001746 transcript:EMLSAT00000001746 description:"maker-LSalAtl2s12-augustus-gene-0.11")

HSP 1 Score: 731.095 bits (1886), Expect = 0.000e+0
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0
Query:    1 MNDSNFERLQRIKNSQRCWYIPIIIMGVLYPFALFIIEEDIYFNDVFSHEDKLPISQGDKIVAMSLCWPILGGDKKDEFPIIAVTLKGAEVWLNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGHTLNLKKVPLWEVDRLILSRIILESELCSLPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIWKFMPWEREKDIVNKQLEILSGIKPRHPWRAFSK 356
            MNDSNFERLQRIKNSQRCWYIPIIIMGVLYPFALFIIEEDIYFNDVFSHEDKLPISQGDKIVAMSLCWPILGGDKKDEFPIIAVTLKGAEVWLNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGHTLNLKKVPLWEVDRLILSRIILESELCSLPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIWKFMPWEREKDIVNKQLEILSGIKPRHPWRAFSK
Sbjct:    1 MNDSNFERLQRIKNSQRCWYIPIIIMGVLYPFALFIIEEDIYFNDVFSHEDKLPISQGDKIVAMSLCWPILGGDKKDEFPIIAVTLKGAEVWLNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGHTLNLKKVPLWEVDRLILSRIILESELCSLPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIWKFMPWEREKDIVNKQLEILSGIKPRHPWRAFSK 356          
BLAST of EMLSAG00000001746 vs. L. salmonis peptides
Match: EMLSAP00000009411 (pep:novel supercontig:LSalAtl2s:LSalAtl2s600:172710:174318:1 gene:EMLSAG00000009411 transcript:EMLSAT00000009411 description:"augustus_masked-LSalAtl2s600-processed-gene-1.1")

HSP 1 Score: 117.857 bits (294), Expect = 2.908e-30
Identity = 71/257 (27.63%), Postives = 129/257 (50.19%), Query Frame = 0
Query:   48 SHEDKLPISQGDKIVAMSLCWPI-LGGDKKDEFPIIAVTLKGAEVWLNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPE--ELYETFGHTLNLKKVPLWEVDRLILSRIILESELCSLPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGS 301
            + E K   S     ++MS+CW        K+ FP     +  + +W  LT  K+   +VY        L ++    + L+ + V V L+PS+ M+C LKAQ+ R+  F+       D++VT++VD + +  ++   L +  T KK+W++ Y  + ++G  F + +IG    TW K++   E      + +T+   + ++    W+VD+ I++  IL+S LC+LP++  +W  + LE  E        +D  TC+HG 
Sbjct:   58 TEEQKKETSDRSIWISMSVCWSSNTKYHGKEXFPYTKAAIMSSTLWHKLTKAKVILQVVYSESNITNDLIEYK---ETLEEVGVRVILVPSNNMECVLKAQIIRVLIFQQPFVHPNDIVVTADVDAFVMTSNITKPLTILST-KKIWIYRYQLSKQTGYTFMMPFIGAVASTWGKILDYDEATGIPGMIQTYKKKMKMQDSYTWDVDQHIVTHSILKSRLCTLPKENTLWKEINLEYQE-------VDDKATCWHGG 303          
BLAST of EMLSAG00000001746 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold125_size330479-snap-gene-0.11 (protein:Tk06885 transcript:maker-scaffold125_size330479-snap-gene-0.11-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 151.369 bits (381), Expect = 1.103e-42
Identity = 98/293 (33.45%), Postives = 152/293 (51.88%), Query Frame = 0
Query:   62 VAMSLCWPILGGDK---KDEFPIIAVTLKGAEVWLNLTTVKLHYSIVYPRKRPPLKLWKFHNDLKGLDPLRVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIG--XSETPEELYETFGHTLNLKKVPLWEVDRLILSRIILESELCSLPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSG-YSTCDLHHPLKNI----DGYPCSIWKFMPWEREKDIVNKQLEILSG 344
            V M+LCW   G  +   K +FP         ++W NLTT ++   IVY        L  +   L+G   L   V L+P+  MDC LKAQL RI  F       EDV+V ++VD + + P++L  + V    K+ W++ Y+ TF  G  F + +IG   KTWK+++     + P ++ +T+   +N  +   W++D+ I+S  IL+S+LCSLPE+  +W  + L+       P  FND +TC+HG+G Y  C+     +N+     G+ C  W F P E    +  K  EI+SG
Sbjct:   77 VTMALCWS--GNTQYHGKSKFPYREALPLSTQLWRNLTTARVVVQIVYNETSISEALRAYRTQLEGYGAL---VKLIPTEGMDCVLKAQLIRILVFDLPEVSPEDVVVLADVDGFIMTPTILLPIKVL-PKKQFWIYRYELTFTMGYTFMLAFIGARAKTWKQILPHYHGDIP-QMIQTYSQLMNFSQGYTWDIDQHIVSYGILQSQLCSLPEENKLWQKLNLK-------PNAFNDNQTCWHGNGVYEDCNNKLWSRNMLIRYHGHACKWWHFYPDETTDQLQAKFQEIMSG 355          
BLAST of EMLSAG00000001746 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1070_size64748-snap-gene-0.15 (protein:Tk03038 transcript:maker-scaffold1070_size64748-snap-gene-0.15-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_120119")

HSP 1 Score: 114.775 bits (286), Expect = 3.182e-28
Identity = 64/206 (31.07%), Postives = 110/206 (53.40%), Query Frame = 0
Query:  129 RVTVDLLPSSEMDCHLKAQLQRIFAFRDNSFRDEDVIVTSEVDIYPLKPSVLHDLDVYRTHKKVWLFHYDHTFRSGNLFSITYIGMTVKTWKKLIGXSETPEELYETFGHTLNLKKVPLWEVDRLILSRIILESELCSLPEDLPIWTMVELEDAERRWNPMYFNDYETCFHGSGYSTCDLHHPLKNIDGYPCSIWKFMPWEREKDI 334
            RV V L  S+ + C L+AQ+ R+   + +  R +D+ VTS+ D +P+ PS+LH L +     KVW+F ++++ +    F + +I M V  W+  +   + P  L E +  T  L     W  D+ I++  +L ++ C  P + PI+  + L+  E       ++D +TCFHG+ ++ C+   P +    YPCS W F P E +KD+
Sbjct:  500 RVHVALSQSAHLQCPLQAQIVRMIPPKLDFIRGDDMWVTSDTDAFPMVPSILHPLSL---PYKVWIFQFEYSLQEAFSFPMCFIAMAVHRWRDTL-VHDNPVNLVEDYAKTYKLDAKRTWGYDQSIITIALLSTKQCRFPANHPIYPALGLQAPEIG----AWDDRDTCFHGTKWANCNKGSPTQ---PYPCSWWHFYPKETKKDM 694          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001746 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001746 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592846817|gb|GAXK01110727.1|8.344e-2727.56TSA: Calanus finmarchicus comp774188_c0_seq1 trans... [more]
gi|592815887|gb|GAXK01138681.1|1.601e-1827.34TSA: Calanus finmarchicus comp511364_c0_seq2 trans... [more]
gi|592934782|gb|GAXK01023771.1|1.248e-1727.78TSA: Calanus finmarchicus comp976042_c0_seq1 trans... [more]
gi|592815888|gb|GAXK01138680.1|1.685e-1526.30TSA: Calanus finmarchicus comp511364_c0_seq1 trans... [more]
gi|592947156|gb|GAXK01011397.1|2.951e-1224.82TSA: Calanus finmarchicus comp23682_c5_seq1 transc... [more]
gi|592767743|gb|GAXK01186825.1|1.787e-724.40TSA: Calanus finmarchicus comp1504810_c0_seq1 tran... [more]
gi|592912532|gb|GAXK01045843.1|9.909e-219.71TSA: Calanus finmarchicus comp1094745_c0_seq1 tran... [more]
gi|592832121|gb|GAXK01125423.1|9.673e+030.00TSA: Calanus finmarchicus comp24010_c0_seq23 trans... [more]
back to top
BLAST of EMLSAG00000001746 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000017460.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s12:12926:... [more]
EMLSAP000000094112.908e-3027.63pep:novel supercontig:LSalAtl2s:LSalAtl2s600:17271... [more]
back to top
BLAST of EMLSAG00000001746 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001746 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001746 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001746 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold125_size330479-snap-gene-0.111.103e-4233.45protein:Tk06885 transcript:maker-scaffold125_size3... [more]
maker-scaffold1070_size64748-snap-gene-0.153.182e-2831.07protein:Tk03038 transcript:maker-scaffold1070_size... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s12supercontigLSalAtl2s12:12926..16942 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s12-augustus-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001746 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001746EMLSAT00000001746-697593Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s12:12926..16942+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001746-684512 ID=EMLSAG00000001746-684512|Name=EMLSAG00000001746|organism=Lepeophtheirus salmonis|type=gene|length=4017bp|location=Sequence derived from alignment at LSalAtl2s12:12926..16942+ (Lepeophtheirus salmonis)
TGTACTGTGTTAGTCCTATTTAGTGTTCTTCTACTTTAGTGGTACTGGGA TACTTAAGCATACTAAAGCGGTCATATATTAAACGAATGTTGGACCAATA CGTGCTGCTCAATTACGTCATAAAAAATGTTCTCCCCATGAAGTAAGCTC TCAAAGTTATTTACCCCCCAAAAAAAAGAAGCAAAAGTAAACATTTTTTT GATAAAAAAGTCCTCAAAATCAAATACATAACACATGATAGTATCGCCAT CTAGCGTTTATTAGCAGTTTGCTTATTACGACAACTATGCGTCATCTTGC GGATGTTTTCTTTTATTCAATTTCCTTATTCCCTATTGCCCTGAACAATA TTTTTGTTCCATAATTTTAGCTCCAAAAGTATAAAAAAAGCCAAAATACC AATATCTATAATAGTTTGGGAACCAGTACGAAAATATTGGTATTATTACA ATCCTACTCTTAATACTAAATATAATGAATTATTCATGGCAAAAATTTGA TTGACAACTTTTGATATGAGATTGTTTTTAACTATATTATAAATAAAATA GTCATTAAAAAGATGAGTGGCTCAACAACGTTTCTGCATAGTCTATGTGT AGTGAAAATATAAACCTTTTCAAAATATCAAGCCACAAAAGGAAACATTG TATAAAAAAAAACAAAAGAAGCATAGACGCAGACGGGCACTCCAATAAAT TTGTTTGGAAGTCCTCATGGGGGTGTGCGTGTATGAATTAGTATTATATT TTCTCGTCGTGATGTTCTGACTTCAAGGTACAATGAATGATTCTAATTTC GAAAGACTCCAAAGAATTAAAAACTCACAAAGATGTTGGTATATCCCAAT AATCATTATGGGAGTGCTCTATCCCTTCGCTCTATTCATCATCGAAGAAG ATATCTATTTCAACGATGTATTTAGTCATGAAGATAAACTACCAATTAGT CAAGGTGATAAAATTGTTGCAATGTCTCTATGTTGGCCAATCCTGGGAGG GGATAAAAAAGACGAGTTTCCAATCATAGCAGTTACATTAAAGGGAGCAG AGGTTTGGTTGAACCTTACGACTGTTAAGCTTCATTATTCCATCGTGTAT CCTAGAAAGAGACCCCCTTTGAAATTATGGAAGTTTCACAATGATTTGAA AGGACTGGATCCATTGAGAGTCACAGTTGATCTACTTCCTAGTTCGGAGA TGGATTGTCATCTAAAAGCACAGCTACAAAGGATTTTTGCTTTCAGAGAC AATTCGTTTAGAGATGAGGATGTCATTGTCACATCAGAGGTGGATATTTA TCCATTGAAACCTTCTGTTCTGCATGATTTAGATGTATATCGAACTCATA AGAAAGTTTGGCTCTTCCATTACGATCATACTTTTAGGTAAAGGATTCTA TTTATATTTTATTATCTTGTTGTGTTTTTTTTTTGTTTTTTTGACGATCT TGTAAATCAAATTGATATTTAAGTAGTAAATATTCAATTTGAAGTCAATT TTATTTTTCAAACTCAGAGATCCCAGAGCCGGTCTTAACTATTGAGGGGG CCCTTTGTCATACATGGTTCAAATCCCAATCTAGGTAACGATAAGTATGA AAACTGAAGTGTGAGAAACCCCTTTTTAAAAAGTTTCAATCTGCCTTTTT TTTAGAAAACAAATTTCGAATCTAAGTTTTTAGAAAATAGATTTCAGGGC CCGTTAGAATATTTTTCCCAATGTCCAATTACAACATTTATTAATACATT AAATCTACGAAGCCCATATTTGAGTGTAGGACCCATGCAGATGCATAGGT TACACTGACCTACCAATAACCAGGCCTGGTATTTGTCATAGCATTACAAA TGGAGGTTTAGGCTTAATTAATATATTAAAAAATCAAGAGTAATATATCG TAAAATAAAGTTTTACACATTGGATCAGAGATTGAATGGGATATTTTAAA TAAAAATATCATTAGATTTATGATCCAATAAATTAAAACTATAAAAGTTG ATTCTATTCAACTCCTGTGGTTAGAGATCCCGCCTTTTTTATGTAGTCAT TTTATTGAATGAATCAAATTTGATTTCAAATTTGTCAAAAAATAGTAATA TTTTCTTTGGAATAAGCCTTTAACAACAGTTCATATCCATATAATTTACC CTTTTATTGTAAAAAAAAACCACATCTACACTGTTGTTTAGCCACGGGAG GATTAGATGTAATTACCTCAGAACAGTTTTAAGCCCGTTGGTGATTTGTA TATGTCGTGAACAAGTTGCAAACAAAAAATAATTTGAAATATTAACAAAA CCTCGGGTCCTAACTATTGCGAGTCCAAATCCAAATTGGATTGGTTTTAG TGTGAGCTAAACCTGTGGGAGACTATTCTTTCTTTCCTATTTGAATTTAT TTTTGAATCTTATCTGTTAAGAAAAAAAGGGAGACCCTTTGGAAATTTTA TTTTGAACCATTTTTTTCCAATGGTCTTTTTCGGGAAAAACAATTCTTCC TTTTTCCCGAATGACATTTTTTTCGAAGAAAAGTTTTTTGTTTTTTTAAA CTAAGCGCGGAGCTTAATTGATGTGTGAGACTCACTGCGGCCGTCTAGGT TGCATTTTAAATTAAAAAAATTTAAAAATAGGATTACTTATGACTAAGAT AATTCAATAACTGAATATTTCATCAATAGTGGTTATATTATTGATGTGTT TTTTTATTTATTACTTTTTAAGTAAAATTCGAATTGGAGAATCTACTGGG CCTTATTATCAAGTTCAAATACCCTCAGTCATATTACTCACAACCTACAT AATNAATAAAACGCAACATTTAGGGGGGGGGGGGCAAGAGGAAAATTTAC AAGATCGAAATAATTTATCATTTTATAATATTTAAACATAGATTTTAAGA TCAGTTAAAAATAATGTTGAGATGATATACATAGTATTACAATTATTTCA ACGGACCTAGAAATTGTCTTTAAAGTCAATATATATATATTGTAGATATC CTCCTCAAAGTGCGACCACGAATCAAAAAAATCATAAATTTGGTAGGTTA CTTTTTATGATAAATAGAATTACTTTTATAGTAGTCTCAAATCTTTTGGT TTGATTGATTTTCATCATTTAAATTATATAAATTATTCAAACCCTCAGTC AATTTTCCCATTTGTTCATAAATAAAATATTGTTTGTGGATAACCACAGA GTACAAAAGAATTAATGAATAATTTTTTATAACAATGATATCTATAATTG CCTGTAAATGATTACTTTTATCCCTTATTGATATTTAATTATAAATATCT TTTTCTCACTCTTCGATTTCAAAAACTGCACTGAGGTTTTCCTATATGAG AAACCAATGAACCAAGTCATCGAACATGTTCTTTGTTTACTTCTCTTCAA AATACTAATATAGTCATTTTTTGATCCATTTACAGATCCGGTAATTTGTT CAGCATAACATATATTGGAATGACAGTGAAAACATGGAAAAAACTCATTG GATAKTCAGAAACTCCTGAGGAACTATATGAAACGTTTGGTCATACTCTT AATCTAAAAAAGGTACCACTTTGGGAAGTTGATCGATTGATTCTCTCGCG TATTATTCTGGAGTCTGAACTCTGCTCTCTTCCAGAGGATTTACCCATAT GGACTATGGTAGAATTGGAAGATGCGGAGAGACGATGGAATCCTATGTAT TTTAATGACTATGAAACCTGTTTCCATGGAAGTGGATACTCTACCTGCGA TTTACATCATCCACTAAAAAACATTGATGGTTACCCGTGTTCTATTTGGA AGTTTATGCCTTGGGAAAGAGAAAAAGATATTGTCAATAAGCAATTGGAG ATTTTGAGCGGCATTAAACCAAGGCATCCCTGGAGGGCATTTAGCAAATA GTAAAATTATTATTTATTTAGTTTTTAGGCCTAATTGAATTGTTTGAATT ATATTCGTATTTGCTTTATGTTGTTTTTTAAAATATACTCGTAGATAAAT TGTTAAACACGTTGGAA
back to top
Add to Basket