EMLSAG00000001771, EMLSAG00000001771-684537 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001771
Unique NameEMLSAG00000001771-684537
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001771 vs. GO
Match: - (symbol:Hml "Hemolectin" species:7227 "Drosophila melanogaster" [GO:0030246 "carbohydrate binding" evidence=ISS] [GO:0042803 "protein homodimerization activity" evidence=IDA] [GO:0005576 "extracellular region" evidence=IDA] [GO:0007599 "hemostasis" evidence=IEP;IMP] [GO:0035006 "melanization defense response" evidence=IMP] [GO:0042060 "wound healing" evidence=IMP] [GO:0006030 "chitin metabolic process" evidence=IEA] [GO:0008061 "chitin binding" evidence=IEA] [GO:0007155 "cell adhesion" evidence=IEA] [GO:0042381 "hemolymph coagulation" evidence=IMP] InterPro:IPR000421 InterPro:IPR000742 InterPro:IPR001007 InterPro:IPR002172 InterPro:IPR002557 Pfam:PF00754 PROSITE:PS01208 PROSITE:PS01286 PROSITE:PS50022 PROSITE:PS50026 PROSITE:PS50068 PROSITE:PS50184 PROSITE:PS50940 SMART:SM00181 SMART:SM00192 SMART:SM00214 SMART:SM00231 SMART:SM00494 GO:GO:0005576 GO:GO:0042803 GO:GO:0007155 InterPro:IPR002919 Pfam:PF01826 SUPFAM:SSF57567 InterPro:IPR013032 PROSITE:PS00022 Gene3D:2.60.120.260 InterPro:IPR008979 SUPFAM:SSF49785 Gene3D:4.10.400.10 GO:GO:0008061 InterPro:IPR001846 Pfam:PF00094 SMART:SM00216 PROSITE:PS51233 InterPro:IPR000436 SMART:SM00032 InterPro:IPR014853 Pfam:PF08742 SMART:SM00832 InterPro:IPR006207 PROSITE:PS01225 SMART:SM00041 SUPFAM:SSF57625 GO:GO:0006030 GO:GO:0042381 PROSITE:PS01185 FlyBase:FBgn0029167 InterPro:IPR012111 PIRSF:PIRSF036569 EMBL:AB035891 ProteinModelPortal:Q9U5D0 STRING:7227.FBpp0075495 PRIDE:Q9U5D0 InParanoid:Q9U5D0 Bgee:Q9U5D0 Uniprot:Q9U5D0)

HSP 1 Score: 45.0542 bits (105), Expect = 5.379e-4
Identity = 19/50 (38.00%), Postives = 28/50 (56.00%), Query Frame = 0 
Query:   41 NCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPEC 90
            +CH F HC      G  + V+K+CG ++MF+P +  CD    V  I+P C
Sbjct: 1873 DCHKFLHCQPKGVEGGWIYVEKTCGEYMMFNPTMLICDHIATVTEIKPNC 1922
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592916567|gb|GAXK01041808.1| (TSA: Calanus finmarchicus comp2068442_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 55.8398 bits (133), Expect = 5.165e-8
Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 0 
Query:   19 MNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPEC 90
            M+ G   ++ C      +    NC+ ++ CT V + G  L V++SCG  LMF+P    CD+ + V +IRPEC
Sbjct: 5417 MSVGDTNVDRCDPAKPLLPHQTNCNIYYQCTQVRNGGVNL-VEQSCGESLMFNPVSMVCDFDYNVVKIRPEC 5629

HSP 2 Score: 50.447 bits (119), Expect = 2.932e-6
Identity = 26/76 (34.21%), Postives = 36/76 (47.37%), Query Frame = 0 
Query:   15 IAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPEC 90
            +A +  +G    +   N   HIA   +C  F+HC    H     +V KSC    MF+P    CDWP  V +I+P C
Sbjct: 6248 LAVKPGQGGEECSATANAIPHIAHESDCSKFYHCVPT-HGRGGQLVLKSCSPGTMFNPKNLICDWPINVYKIKPLC 6472
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592903672|gb|GAXK01054703.1| (TSA: Calanus finmarchicus comp1053914_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.5286 bits (127), Expect = 2.908e-7
Identity = 25/64 (39.06%), Postives = 36/64 (56.25%), Query Frame = 0 
Query:   27 NECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPEC 90
            ++C     H++DS +CH F+HC+      Y   + KSCG  LMF+   + CDWP  V + RP C
Sbjct: 1770 DKCSPNSLHMSDS-DCHVFYHCSM-----YGRPITKSCGQ-LMFNDLDKVCDWPANVMKYRPGC 1940
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592910861|gb|GAXK01047514.1| (TSA: Calanus finmarchicus comp75099_c5_seq2 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 5.151e-5
Identity = 26/70 (37.14%), Postives = 33/70 (47.14%), Query Frame = 0 
Query:   36 IADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEA----SGERKPY 101
            I D  +CH F+ C              SCG  +MF+ F Q CDWP  V ++RPEC  E     S +  PY
Sbjct: 1542 IPDPEDCHIFYQCDLNPQP-------MSCGN-MMFNSFRQVCDWPSTVLQLRPECRQEEQFRFSSQEYPY 1727
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592910862|gb|GAXK01047513.1| (TSA: Calanus finmarchicus comp75099_c5_seq1 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 5.158e-5
Identity = 26/70 (37.14%), Postives = 33/70 (47.14%), Query Frame = 0 
Query:   36 IADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEA----SGERKPY 101
            I D  +CH F+ C              SCG  +MF+ F Q CDWP  V ++RPEC  E     S +  PY
Sbjct: 1551 IPDPEDCHIFYQCDLNPQP-------MSCGN-MMFNSFRQVCDWPSTVLQLRPECRQEEQFRFSSQEYPY 1736
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592910857|gb|GAXK01047518.1| (TSA: Calanus finmarchicus comp75099_c5_seq6 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 5.394e-5
Identity = 24/58 (41.38%), Postives = 30/58 (51.72%), Query Frame = 0 
Query:   36 IADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINE 93
            I D  +CH F+ C              SCG  +MF+ F Q CDWP  V ++RPEC NE
Sbjct:  211 IPDPEDCHIFYQCDLNPQP-------MSCGN-MMFNSFRQVCDWPSTVLQLRPECRNE 360
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592910859|gb|GAXK01047516.1| (TSA: Calanus finmarchicus comp75099_c5_seq4 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 5.508e-5
Identity = 26/70 (37.14%), Postives = 33/70 (47.14%), Query Frame = 0 
Query:   36 IADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEA----SGERKPY 101
            I D  +CH F+ C              SCG  +MF+ F Q CDWP  V ++RPEC  E     S +  PY
Sbjct: 1509 IPDPEDCHIFYQCDLNPQP-------MSCGN-MMFNSFRQVCDWPSTVLQLRPECRQEEQFRFSSQEYPY 1694
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592910860|gb|GAXK01047515.1| (TSA: Calanus finmarchicus comp75099_c5_seq3 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 5.515e-5
Identity = 26/70 (37.14%), Postives = 33/70 (47.14%), Query Frame = 0 
Query:   36 IADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEA----SGERKPY 101
            I D  +CH F+ C              SCG  +MF+ F Q CDWP  V ++RPEC  E     S +  PY
Sbjct: 1518 IPDPEDCHIFYQCDLNPQP-------MSCGN-MMFNSFRQVCDWPSTVLQLRPECRQEEQFRFSSQEYPY 1703
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592938230|gb|GAXK01020323.1| (TSA: Calanus finmarchicus comp13717_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 8.227e-2
Identity = 17/55 (30.91%), Postives = 24/55 (43.64%), Query Frame = 0 
Query:   30 PNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVR 84
            PN +  ++   NC D   C   +  G   +    C T L+FD   Q CDW  +V 
Sbjct:  432 PNEYFRLSTESNCRDVVRCVANDFVGGHSLAAVRCPTGLLFDLDGQVCDWAAKVE 596
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592938231|gb|GAXK01020322.1| (TSA: Calanus finmarchicus comp13717_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 8.428e-2
Identity = 17/55 (30.91%), Postives = 24/55 (43.64%), Query Frame = 0 
Query:   30 PNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVR 84
            PN +  ++   NC D   C   +  G   +    C T L+FD   Q CDW  +V 
Sbjct:  432 PNEYFRLSTESNCRDVVRCVANDFVGGHSLAAVRCPTGLLFDLDGQVCDWAAKVE 596
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Match: gi|592868381|gb|GAXK01089181.1| (TSA: Calanus finmarchicus comp1416869_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 1.263e-1
Identity = 18/53 (33.96%), Postives = 26/53 (49.06%), Query Frame = 0 
Query:   28 ECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWP 80
            +C +    I +S NC  +F C+   H    L   + C   L+FDP L  C+WP
Sbjct:  169 KCDHAGQLIPNSENCRKYFKCS---HGEPTL---QDCPGNLIFDPNLHICNWP 309
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BLAST of EMLSAG00000001771 vs. L. salmonis peptides
Match: EMLSAP00000001771 (pep:novel supercontig:LSalAtl2s:LSalAtl2s12:1728453:1734753:-1 gene:EMLSAG00000001771 transcript:EMLSAT00000001771 description:"augustus-LSalAtl2s12-processed-gene-18.11")

HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0 
Query:    1 MEIVESDRHVSTVLIAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEASGERKPYLTRIYTWHPKGKNPLKDINNQFITKKYSESKRQELLSSTTQRFNRANDPRNXXXSPLPXTVVSTTVSIVYTTLPAYAQIKEARSPDPISQKPLTLSKVIPMGKFSLNSLRIFTPQNVTKXRXASPKQLSTQNWTLSNKNPRKYRPLSSNLIKLKIFKG 259
            MEIVESDRHVSTVLIAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEASGERKPYLTRIYTWHPKGKNPLKDINNQFITKKYSESKRQELLSSTTQRFNRANDPRNXXXSPLPXTVVSTTVSIVYTTLPAYAQIKEARSPDPISQKPLTLSKVIPMGKFSLNSLRIFTPQNVTKXRXASPKQLSTQNWTLSNKNPRKYRPLSSNLIKLKIFKG
Sbjct:    1 MEIVESDRHVSTVLIAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEASGERKPYLTRIYTWHPKGKNPLKDINNQFITKKYSESKRQELLSSTTQRFNRANDPRNXXXSPLPXTVVSTTVSIVYTTLPAYAQIKEARSPDPISQKPLTLSKVIPMGKFSLNSLRIFTPQNVTKXRXASPKQLSTQNWTLSNKNPRKYRPLSSNLIKLKIFKG 259
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BLAST of EMLSAG00000001771 vs. L. salmonis peptides
Match: EMLSAP00000010551 (pep:novel supercontig:LSalAtl2s:LSalAtl2s6:95214:96724:-1 gene:EMLSAG00000010551 transcript:EMLSAT00000010551 description:"maker-LSalAtl2s6-snap-gene-1.7")

HSP 1 Score: 50.0618 bits (118), Expect = 5.657e-8
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 0 
Query:    9 HVSTVLIAKEMNKGVLRMN--ECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPEC 90
            H+ST    K  N+G   ++  E P    +  D  +C  F+ C+      +  + KK+CG+ L F+P  Q CDWP +V R+RPEC
Sbjct:   21 HLSTSSRPKRQNEGSSNIDCRESPTIFNY-PDPEDCSIFYQCSV-----WTGIKKKTCGS-LFFNPESQICDWPHKVSRLRPEC 97
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BLAST of EMLSAG00000001771 vs. Select Arthropod Genomes
Match: EFX89581.1 (hypothetical protein DAPPUDRAFT_310490 [Daphnia pulex])

HSP 1 Score: 55.4546 bits (132), Expect = 6.605e-8
Identity = 28/80 (35.00%), Postives = 40/80 (50.00%), Query Frame = 0 
Query:   11 STVLIAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPEC 90
            +++L+ KE    +   N+C     H     +C+ F+HC  V        V+K+C    MF+P    CDWP  V RIRPEC
Sbjct:   70 TSILMEKEPIVAIPLSNQCDPARPHSPHPTDCYKFYHC--VNRPNGVQQVEKTCNPPTMFNPDTMICDWPESVMRIRPEC 147
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BLAST of EMLSAG00000001771 vs. Select Arthropod Genomes
Match: EFX89582.1 (hypothetical protein DAPPUDRAFT_310489 [Daphnia pulex])

HSP 1 Score: 53.1434 bits (126), Expect = 4.458e-7
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 0 
Query:   15 IAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPEC 90
            + + MN+G  R   C     H A   NC+ F+HC  V+       V+K+C    MF+P    CDWP  V R+RPEC
Sbjct:   62 VGQSMNQGPKR---CDPARPHSAHPTNCYMFYHC--VDRLTGIEQVEKTCNPPTMFNPDTMVCDWPESVMRLRPEC 132
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BLAST of EMLSAG00000001771 vs. nr
Match: gi|1022757821|gb|KZS04414.1| (putative Hml [Daphnia magna])

HSP 1 Score: 65.4698 bits (158), Expect = 1.332e-8
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 0 
Query:   11 STVLIAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEASGERKPYLTRI 105
            +++ I KE    +    +C     H     NC+ F+HC  V+   Y   V+K+C    MF+P    CDWP  VR+IRPEC    SG + P+++ I
Sbjct:   93 TSIRIDKEPTASIPVPGQCDPTRPHSPHPTNCYMFYHC--VQRLNYVEKVEKTCNPPTMFNPDTMICDWPESVRKIRPECGVSISGTQSPFVSSI 185
[Close]
BLAST of EMLSAG00000001771 vs. nr
Match: gi|942388667|gb|JAN76263.1| (Hml [Daphnia magna])

HSP 1 Score: 63.1586 bits (152), Expect = 8.760e-8
Identity = 33/95 (34.74%), Postives = 48/95 (50.53%), Query Frame = 0 
Query:   11 STVLIAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECINEASGERKPYLTRI 105
            +++ I KE    +    +C     H     NC+ F+HC  V+   Y   V+K+C    MF+P    CDWP  VR+IRPEC    SG + P ++ I
Sbjct:   93 TSIRIDKEPTASIPVPGQCDPTRPHSPHPTNCYMFYHC--VQRLNYVEKVEKTCNPPTMFNPDNMICDWPESVRKIRPECGVSISGTQSPIVSSI 185
[Close]
BLAST of EMLSAG00000001771 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold237_size242172-snap-gene-1.26 (protein:Tk05171 transcript:maker-scaffold237_size242172-snap-gene-1.26-mRNA-1 annotation:"Hemocytin")

HSP 1 Score: 51.6026 bits (122), Expect = 1.027e-7
Identity = 24/67 (35.82%), Postives = 32/67 (47.76%), Query Frame = 0 
Query:   26 MNECPNGHAHIADSMNCHDFFHCTTVEHAGYALMVKKSCGTFLMFDPFLQNCDWPFRVRRIRPECIN 92
            + EC     HI    +C  F+HC+   + G    V K CG   +F P    C WP  V R+RP+C N
Sbjct:  726 LRECDPNVPHIPHENDCQYFYHCSHPTYGGVPSQVLKKCGPGTLFHPIKMICTWPNEVFRVRPDCGN 792

HSP 2 Score: 49.2914 bits (116), Expect = 7.006e-7
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 0 
Query:   11 STVLIAKEMNKGVLRMNECPNGHAHIADSMNCHDFFHCTTVE--HAGYAL-MVKKSCGTFLMFDPFLQNCDWPFRVRRIRPEC 90
            ST +I    N  +  ++ C    + +AD  +CH +  C   E  + G  +  V+KSCG  LMF+P+   CDW   V ++RP C
Sbjct:  622 STTII---QNITIDSLHSCDPTQSLLADPKDCHLYKECIEEEMPYGGKKVKFVEKSCGDSLMFNPYTMECDWSHNVAKLRPIC 701
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001771 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-5.379e-438.00symbol:Hml "Hemolectin" species:7227 "Drosophila m... [more]
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BLAST of EMLSAG00000001771 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592916567|gb|GAXK01041808.1|5.165e-836.11TSA: Calanus finmarchicus comp2068442_c0_seq1 tran... [more]
gi|592903672|gb|GAXK01054703.1|2.908e-739.06TSA: Calanus finmarchicus comp1053914_c0_seq1 tran... [more]
gi|592910861|gb|GAXK01047514.1|5.151e-537.14TSA: Calanus finmarchicus comp75099_c5_seq2 transc... [more]
gi|592910862|gb|GAXK01047513.1|5.158e-537.14TSA: Calanus finmarchicus comp75099_c5_seq1 transc... [more]
gi|592910857|gb|GAXK01047518.1|5.394e-541.38TSA: Calanus finmarchicus comp75099_c5_seq6 transc... [more]
gi|592910859|gb|GAXK01047516.1|5.508e-537.14TSA: Calanus finmarchicus comp75099_c5_seq4 transc... [more]
gi|592910860|gb|GAXK01047515.1|5.515e-537.14TSA: Calanus finmarchicus comp75099_c5_seq3 transc... [more]
gi|592938230|gb|GAXK01020323.1|8.227e-230.91TSA: Calanus finmarchicus comp13717_c0_seq2 transc... [more]
gi|592938231|gb|GAXK01020322.1|8.428e-230.91TSA: Calanus finmarchicus comp13717_c0_seq1 transc... [more]
gi|592868381|gb|GAXK01089181.1|1.263e-133.96TSA: Calanus finmarchicus comp1416869_c0_seq3 tran... [more]

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BLAST of EMLSAG00000001771 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000017710.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s12:172845... [more]
EMLSAP000000105515.657e-835.71pep:novel supercontig:LSalAtl2s:LSalAtl2s6:95214:9... [more]
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BLAST of EMLSAG00000001771 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001771 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
EFX89581.16.605e-835.00hypothetical protein DAPPUDRAFT_310490 [Daphnia pu... [more]
EFX89582.14.458e-738.16hypothetical protein DAPPUDRAFT_310489 [Daphnia pu... [more]
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BLAST of EMLSAG00000001771 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|1022757821|gb|KZS04414.1|1.332e-834.74putative Hml [Daphnia magna][more]
gi|942388667|gb|JAN76263.1|8.760e-834.74Hml [Daphnia magna][more]
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BLAST of EMLSAG00000001771 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold237_size242172-snap-gene-1.261.027e-735.82protein:Tk05171 transcript:maker-scaffold237_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s12supercontigLSalAtl2s12:1728453..1734753 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s12-processed-gene-18.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001771 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001771EMLSAT00000001771-697618Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s12:1728453..1734753-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001771-684537 ID=EMLSAG00000001771-684537|Name=EMLSAG00000001771|organism=Lepeophtheirus salmonis|type=gene|length=6301bp|location=Sequence derived from alignment at LSalAtl2s12:1728453..1734753- (Lepeophtheirus salmonis)
ATGGAAATCGTCGAGTCCGACCGTCATGTAAGCACTGTTTTGATTGCCAA
GGAGATGAACAGTAATGGAAATCGGCCATAAAAATGTCCATTAAAGATAA
TGGATTTCTTTCTAATACACCTTATATTTTAACAAGAAAGAATATTTTTT
AAACTAGTCTTACTCATATATTCTCATTTTGTATCATTGCCACAAATAAT
CCATGGGTTGAATTTTTTCTCACCCGATCCGACCGGCAATAAATCCTTAA
ATAAAAGTGATGAAACAACTATTTTACGTGGAGCTGGAGGTTGAATAATT
GAGAAATACACAACTCGCCCCGTGGTCTAAAAGTCAACGCGGATGTTTAT
ATACATAGTAGTTATAATAATTGAATGAAACTTATATAATTAAATACATA
ATTTTCCGAACCTGTAAAACTCTGACAAATCACGGGAAAGAAAACCTACT
AACCGTTTAAATAATTATAAATAAAATGCTTTATCAGCATCATCAACCCA
TTTTCTATAGGCAAATTGTCTTATGTGGGATATAGGTCATTTTTATTCTT
ATCCACTTCTTGCTGTTGATGATACAACACAGTAATGGACGACATAATAC
CCAAAGTACAGTAAGGTGACTCAAATTAATAGGGAAAATTCCCTATGTAA
CCAAAAATCCTCACTTATCAAAGATATGATAAGTTATATGGGTCATCTTT
TAGAAGGCACATAAAATAAGTGTTAGTTTTCCATGAGGTGCAGCATTTTG
TTACTACAATATTAATCCCTCTGTCCAAGAAAATGAAAGTTGACAAAGAA
TATATATGTATTGTAAATTAAAGTACAATCCATGATTACATAACATAATA
AAAGTATCCTTTAAAATTCATTCTTATGGACTTAAATACTTCTCAATGCT
AAGTAAATAAGTAGTTTGATAGTGGGTTTAAATCTTCTTACCGTTAAGAG
TATATTGAGCTTCTTATCATTTCATCATACTTTTAATCCTCTAAAAAGAA
GGTTTCTATTGTACTATTATAACTAATAAGTTGTCATTAACATACTTACT
TATGTATGTAAATACCCAGGCTATTATAAGTAGTACGTAATAAAAAAGTA
TGCCATTTAATTAAGAGAAATTTGTTAAAGTATGGATTAGTCTATCTACA
TATTTTGGATTAATTCCGTCCTCTCCCTTAAATGTACATACCTACAAGTA
GTGTTGGAGATCTACACTTGACCCGATTATTGGCCCGAATTATAACTAGA
TTCATATGGAATGTCTTCTAATCAGATAAAAATTCAACAAAATTTCCAAT
ATACTCTATAAAATTCAATTCGGGCCGACGCGTTCGACCTTCTCTAAGAA
GTGCAAGGGCTTGACCCGCTAGCTTTCATAGAATTGAACACAGTGCTGGG
ACACACGGACTTCTCCTTGACAAATTCAGCCCTGTACCACAACTGGTATT
TAGTTACATATTTAGTGATTATTTAAACATACTTAAATTAAAAAAAGGGA
GCAAATGTCCAGATCATTGTTGATTTTATAATTAGATGGGTTTAGTATGT
TGAAATCAATAAAATCATTTGATTTTATTATTTGTAATGATAAAATTTTG
ATTGGTAATAGATTTTTTTTAAATCAATCACTCTGAAACACTCGCAATTT
GTCACACAAAAACCAAACGTGAAAAAGAATGGAGGGTCACCCTAATTTAA
CGGCCATACTTTTTTCATAATACAAAATACTCACTTGTTTATCTGTTTAC
CAAATGCGTTATGAATTGATCTATTTGAATAAATATATGTATGTAGAGGA
ATGCATAAGAATTAAAATTCCTTTAAGACGCTAAATGCTTAAAGAAGATA
TTTTCCAACTTACAATTGTAAATTTTATAAACAAACATAAACTCCTATAG
AAAAAAAAAATACTCTTTCAAAGAATTACATTCTAATTAACCATTACTCA
CTGTCAGAAGACAAACAATATAATCCATTTTCGTAATCTTTTGAACAATT
ATCAAAAGATTAAAGGTTCTTCCAAGCAGAAAGGGGACATAATAAATATG
TAAGTTAGGTAAAAGTAGTAGACGTGGGGTTGATAGAGTGGGAAAAGTTG
AAGATTTTTTCTTTTATTTACATAAACATGCAATCAAGGTCATTCATATC
CTTTATTTTTTATTGTCATTCCTATATGTGACAAATCAAGAATGAATACT
CAATACTGAAGGAGAGTGTTAGGATCAAATCCTCACATTTTTCAAAAATA
TGTAAATGTCACTGAGGCCAAATTTTTGGGGAGATTTACGGTTTGAATTG
TACATATGAATGTTGAAAAGGGCTCATTTGCAATCCAAGGTCTGAATTTT
GTTGCATAGTATTACTCTCTGTTTTTCATGAGCATACAAACTTAGACGTT
CTCTCCTCAAGAATGAAAGAATAATCATCTTACCTCAGGGAATTAGAACT
TTTCAAGTGATCAATTAATTTAAAAAATAGTTTTCAATCCATACAATGGT
ATTTTATGAGTTAATACAATTTCCTCTTTCATGAAATAACCATTATGAAT
ACTCTACGAAAAGACCTTCAGTTGGTCAATAAAAAAAGGACAGGGGAAAA
AGTGTGCTTTTTCCATAATATATAGAGTACATGATATATATTTCTTGGAC
AAATAGAGTCAAAAAACAATTAGAGACACGGGGGAAAGTTCCTTATTTTA
TTCAATATCATTTAATAAAATCAATAAGTAATACATGTATAATATTTGAA
GCCGAGGAGGTACGTACGTACAATGTACATGACATAGGTATAATTATCCC
TTAAATACAAATAAATTAGAGCAACAACGAAAATACATATGTAGTTTTAC
TTGTCTGCTTAGCTACCTATAACATATGTTTCATTTTATGTAAATAAGTT
ATCAACGGTATATGTTTTCCTTTTTCAGAGGGAGTTTTGAGAATGAATGA
ATGTCCAAATGGTCATGCACATATTGCAGATAGCATGAATTGTCATGATT
TCTTTCATTGTACAACTGTAGAGCATGCGGGATATGCACTCATGGTCAAG
AAATCATGCGGAACCTTTCTCATGTTCGATCCCTTTCTTCAGGTATGTAT
GAGCTCAATTCTAAAAGGAGTTAGTTACAAGGGCGTATTTTGCTTGTCAG
ACCCAGAGGTCGGAGATAAATAATTAAGAATTACTAATTTATATAATACA
AATGCAGTTTTCTATATTGTTAAGAGACTTTGGAACCTCAAACTCCCATA
CCCAAAATCCTTAAAGCACTAAAAACATGAATAAATATTGAAATTGCAAC
AACACCTTTATTGAGCTTTTAATTTTTTGAAGTCGTGGATTTAAAAATAA
ACATATCAGAGGCATCTGGAGGCGTATATTTTTTTAGAGGGGGCTTGGTT
GTATGAATTTATTTGAAAATAAATACAAAAATTAAAATAAAATAAAAATT
CTTTTTGAAAAAACTTTTAAAAATTAAAATTTTTGAAAAAAAGTTAAAAA
TAATTATTTTTTTCGTATTTTTAAAAAAAAAATCCACAGCTACTAAAAAA
AATTTCAAAATTTAAATTTTCAATATTACATTTTTTGAAAAAAATTTTAA
AATATTAAATTTTTTTAGAAAAATTTCTATAATCTATAGTTGTTCTCAAA
AATCCATAGTGATTCCCCAAGAAATTAAATTTTTTCCCAAAAAAAATATT
TCAAAAATTTAAAAATATTTATTTTTCAAGAAACTTTTAAAAATTAAATT
AAATTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTATTAAATTTTTGGAAAATAAACT
TAAAAATTAAATTTCAATTATATAATTTTTTGAAAAAAATTAAAACTATT
AAATTTTTTGGTTTGTTTTTAAATAAATCTATCGATATTCACTGAGAATT
AAATTTTTGCAAAAAAAAATTGAAAAGTTAAATTAAATTTTAAATATTAA
ATTTTCTAGTAAAAACAAATAGTCCTTTATTTTTTTCACAACCCCTCAAG
CCCACCAACACCAGATGCCCCCACATATGTAGTAAGTTAACAACAGTCTT
GAACAGATATATATATATACAAAAAGAGAAACAAACTTTATTTCCTAGAC
ATATTTTGGTCAATTATAGACTATGTATATAAATCTCTTGGACGAGTTGA
AATATTCAAGGATGTTAAATATATGTAGCTTAGAGTCTTAAATTGATTAG
GAGATACGGCCTTTCAAATAAAATATCCCAACTTCTTTCATTGTGCCATT
GAATTTTTGTCTACTCCATGTCAAATTTGGAGCACCTCAGAATGATTTAT
TGATAGAAATTGACGATCCTTTGTTGTCAAAGAATACAAATGCAATCCTC
ATTCAATTTTGAGAATAATCATTTTAGCTTAGTCTTGTGTTGATTGGCCA
CCTATATCCGTATCAGCCAAAAAACAACAACTAGAACCTCACTTAGATAT
TTCATCACTGTTTTTATGTTTTTCTAGAAAATAAACCAAACTGGATTGGA
CTTTAAACTGTCTACTCGAACAAAATAATTCAAAATAGAAGTAAAATGCC
TTACTTTACTTTGACAAATTTAAAAAAGGCTTGATTTAGAACCATATACA
CATGGTGTGACAACTTAACTTCCTTTTTCTAAAAGGCAATTAAACAAGTT
TTATAAATCGGTGAATTTTTGCTTTTTGTTTCATAATAATAGTACACATT
TAAAATTTTGTTCAACATAGGTTTACAAATCATATCAGACAGGTGATGTG
CGCTATTACTCATACAATACTCATTTCTCTTTAAATAACTTTTTATTGAG
AGGCATTTAGAAGGACAATAATTTTCTACAAAAGAATGGAAAATTTAATT
GGCAATATATCTTATTTTATAGTTGTGTTTGATAAATTATTTTTTTTTAA
ATAAGTAATTGACAATTCCGAAGAGTTATAATTTTTTTCTATTTCTCCAG
TTCTAATTACCCAATTTTGACCAACAAACCCAATTTAAAAAAAATGCACA
TCACCAAATATGGCAGSATCATTATAACTCTCTAGTCTAGTGAGGAATAT
GCGTTTACCGTCGGAAACAGCATATTCCTCACTACTCCAACGCATGATAG
CGATTGACTGTATTCTCAAGAAAATTTTATAATCTTGCCTCTAMAAATGT
AACCACGCCCMCYCCGCCATTACTTTTACAGCCTGATTGTCACGTATTAT
AAAAAGGACGTTATGTTGCCGCACTCTGGATATTTAGAACCGATGACAGC
ATTGTAATATGGCTAGAAATCTGATCAATAAAAATCAACCTACATTCAAA
TTATTCAGCTTTTTTTTACACTCAAGACTTAGGAGAAATAATTTTATATA
CCAAACCCCTAGCTAAAAYCCTGCCTATAAAAGGTATTCTCTCAATCCCT
CCGCTAATTACTAACACCTCAGTGGCTATCTTCTATTTAATTAAATAAAA
TAAAACTATGTTTAAACATGTATATAATGTGCGAATTGTATTTTAGAATT
GTGATTGGCCTTTTCGAGTACGTCGTATTCGACCAGAATGTATAAATGAA
GCCAGTGGAGAGAGAAAACCGTATCTCACCCGAATCTACACATGGCATCC
CAAAGGCAAAAATCCATTAAAGGATATAAACAACCAATTCATCACCAAAA
AATACTCTGAGAGTAAAAGGCAAGAACTATTGAGCTCTACAACTCAGCGG
TTCAACAGAGCAAACGATCCAAGAAACMCCMCGYCCTCMCCCCTTCCAYC
AACCGTTGTGTCAACTACAGTCTCCATTGTATATACAACCCTTCCTGCAT
ATGCACAAATCAAAGAAGCAAGATCGCCTGATCCAATTTCCCAGAAGCCC
CTTACACTTTCTAAAGTGATACCCATGGGGAAATTCAGTTTGAACTCTCT
ACGAATCTTTACTCCTCAAAACGTAACAAAGTKGAGARAAGCCAGTCCAA
AACAACTGTCAACTCAAAATTGGACATTATCTAACAAAAATCCTAGGAAA
TATCGGCCATTATCTTCTAATTTGATCAAATTGAAAATATTTAAAGGATA
A
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