EMLSAG00000001806, EMLSAG00000001806-684572 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001806
Unique NameEMLSAG00000001806-684572
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001806 vs. C. finmarchicus
Match: gi|592781448|gb|GAXK01173120.1| (TSA: Calanus finmarchicus comp133361_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 6.287e-5
Identity = 69/221 (31.22%), Postives = 101/221 (45.70%), Query Frame = 0
Query:   16 EDLWDDIDDAVLLRMSQMAEK---KVRGNESESQADFLSVLSESE---EDLNCFTA------DENRFNQMQTQF--PETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGS--QTP-GRKV 219
            +D  +D DDA+LL  SQM E    K   NE E  A   ++L + +   +D+    A       E R NQ  T F  P T     +    PP      R + E    I K  E+  +LK  + K        +GE + LR+++ K+   IE ER  ++K+ A    +L   K+       A+KT+  FL  ++ Q +EKL+KME  +   GS   TP  RKV
Sbjct:  406 DDWGEDGDDALLLAASQMVEPVAAKAETNEEELLA-MTAMLEDDDFGLDDVAGLEAAALEMEQEERLNQTVTVFNCPPTQSTSTQMFRQPPPPQPPMRGQAE----ISKAKEEQERLKKLHMKA-------QGEASFLRSELGKQSKEIEGERISKRKLEAELKSKLEAEKKVKENEISAIKTEKLFLVQEMQQLKEKLKKMESEVKREGSVGTTPRSRKV 1032          
BLAST of EMLSAG00000001806 vs. C. finmarchicus
Match: gi|592781447|gb|GAXK01173121.1| (TSA: Calanus finmarchicus comp133361_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 45.8246 bits (107), Expect = 3.003e-4
Identity = 71/230 (30.87%), Postives = 103/230 (44.78%), Query Frame = 0
Query:    7 DAFLSNSGMEDLWDDIDDAVLLRMSQMAEK---KVRGNESESQADFLSVLSESE---EDLNCFTA------DENRFNQMQTQF--PETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGS--QTP-GRKV 219
            D F      +D  +D DDA+LL  SQM E    K   NE E  A   ++L + +   +D+    A       E R NQ  T F  P T     +    PP      R + E    I K  E+  +LK  + K        +GE + LR+++ K+   IE ER  ++K+ A    +L   K+       A+KT+  FL  ++ Q +EKL+KME  +   GS   TP  RKV
Sbjct:  385 DGF--GDSQDDWGEDGDDALLLAASQMVEPVAAKAETNEEELLA-MTAMLEDDDFGLDDVAGLEAAALEMEQEERLNQTVTVFNCPPTQSTSTQMFRQPPPPQPPMRGQAE----ISKAKEEQERLKKLHMKA-------QGEASFLRSELGKQSKEIEGERISKRKLEAELKSKLEAEKKVKENEISAIKTEKLFLVQEMQQLKEKLKKMESEVKREGSVGTTPRSRKV 1032          
BLAST of EMLSAG00000001806 vs. L. salmonis peptides
Match: EMLSAP00000001806 (pep:novel supercontig:LSalAtl2s:LSalAtl2s130:11951:14764:1 gene:EMLSAG00000001806 transcript:EMLSAT00000001806 description:"augustus_masked-LSalAtl2s130-processed-gene-0.2")

HSP 1 Score: 1229.54 bits (3180), Expect = 0.000e+0
Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 0
Query:    1 MNRRRSDAFLSNSGMEDLWDDIDDAVLLRMSQMAEKKVRGNESESQADFLSVLSESEEDLNCFTADENRFNQMQTQFPETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGSQTPGRKVPERRSIGFPEHDISTIIPDPKRVSPRKKTRALKDASCQVELKKLNSFELKVKGRKENLTSAKLVSLIGSDMGLDILSSHSPLVQCLYSTERTNDACLATVEDMISSIKNDVDVNLMLKKLKASKLILDASNIFAKYLSQKSVIQLSELLSTKDAQKETLLSLFSLGEVLVRKHLVKHEDFRTFVTRLQDLFKSITSIELTSSLLNFLSGSAFYPDIAKLYCQMSTNSCFIFELCSLVTRASSFHGNVASLMKNFLKFLFIHMSSPEDLSWIGSLPSNEICNLCRMDILKTVASLTVKILQKVQSLIAADALSEDFIFCLKKSIHCLHKLWSTDPNFVQNLSDSPGSQREYIWATKKLSKMETLLQLSQEEASMLADLNIQYDQR 603
            MNRRRSDAFLSNSGMEDLWDDIDDAVLLRMSQMAEKKVRGNESESQADFLSVLSESEEDLNCFTADENRFNQMQTQFPETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGSQTPGRKVPERRSIGFPEHDISTIIPDPKRVSPRKKTRALKDASCQVELKKLNSFELKVKGRKENLTSAKLVSLIGSDMGLDILSSHSPLVQCLYSTERTNDACLATVEDMISSIKNDVDVNLMLKKLKASKLILDASNIFAKYLSQKSVIQLSELLSTKDAQKETLLSLFSLGEVLVRKHLVKHEDFRTFVTRLQDLFKSITSIELTSSLLNFLSGSAFYPDIAKLYCQMSTNSCFIFELCSLVTRASSFHGNVASLMKNFLKFLFIHMSSPEDLSWIGSLPSNEICNLCRMDILKTVASLTVKILQKVQSLIAADALSEDFIFCLKKSIHCLHKLWSTDPNFVQNLSDSPGSQREYIWATKKLSKMETLLQLSQEEASMLADLNIQYDQR
Sbjct:    1 MNRRRSDAFLSNSGMEDLWDDIDDAVLLRMSQMAEKKVRGNESESQADFLSVLSESEEDLNCFTADENRFNQMQTQFPETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGSQTPGRKVPERRSIGFPEHDISTIIPDPKRVSPRKKTRALKDASCQVELKKLNSFELKVKGRKENLTSAKLVSLIGSDMGLDILSSHSPLVQCLYSTERTNDACLATVEDMISSIKNDVDVNLMLKKLKASKLILDASNIFAKYLSQKSVIQLSELLSTKDAQKETLLSLFSLGEVLVRKHLVKHEDFRTFVTRLQDLFKSITSIELTSSLLNFLSGSAFYPDIAKLYCQMSTNSCFIFELCSLVTRASSFHGNVASLMKNFLKFLFIHMSSPEDLSWIGSLPSNEICNLCRMDILKTVASLTVKILQKVQSLIAADALSEDFIFCLKKSIHCLHKLWSTDPNFVQNLSDSPGSQREYIWATKKLSKMETLLQLSQEEASMLADLNIQYDQR 603          
BLAST of EMLSAG00000001806 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold344_size201325-processed-gene-1.13 (protein:Tk02540 transcript:snap_masked-scaffold344_size201325-processed-gene-1.13-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC762700")

HSP 1 Score: 60.4622 bits (145), Expect = 9.679e-10
Identity = 125/563 (22.20%), Postives = 238/563 (42.27%), Query Frame = 0
Query:  116 RKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTH-----------------QLTQTEEKLRKMEMLMTTNGSQTPG---RK---VPERRSIGFPE--HDISTIIPDPKRVSPRKKTRALKDASCQVELKKL-NSFELKVKGRKENLT----------SAKLVSLIGSDMG-LDILSSHSP----LVQCLYSTERTNDACLATVEDMISSI--KNDVDVNLMLKKLK----ASKLILD--ASNIFAKYLSQKSVI--QLSELLSTKDAQKETLLSLFSLGEVLVRKHLVKHEDFRTFVTRLQDL----------FKSITSIELT----SSLLNFLSGSAFYPDIAKLYCQMST--NSCFIFELCSLVTRASSF--------HGNVASLMKNFLKFLFIHMSSPED--LSWIGSL----PSNEICNLCRMDILKTVASLTVKILQKVQSLIAADALSEDFIFCLKKSIHCLHKLWSTDPNFVQNLSDSPGSQREYIWATKKLSKMETLLQLSQEEASMLADLN 597
            ++L+  N+KL  + Y+K GE++ L+    + E  +  ER ER+K+   + E   + +    +  +A++T+ +FL                   Q+T T E       ++  NG+  P    RK   +P      F +  HD S  I   +  SP K+ + L   S  V+   + N  + +++ R    T          S   VSLI  +   L +L + +P    + +CL   +    +CL    ++ SSI   N+   + +++ +K    A K ILD  AS++   ++    +I      L+       + L ++F     ++  +L +  D    + + QD+          FK     +L     +++L+ L+ S  Y  + +  C  S+  N C    L  L+TR  +               L+++F+ ++   ++  ++  + W+GS     PS   C  CR ++  T+  + V+I++K        +         +  I  LH++W  DP F ++L      QR YIW TK+L K++  L   ++   ++ DL+
Sbjct:  222 QRLRRENEKLVTDKYSKLGEISFLKTKKEEIEKKLVEERDERRKLELLQTETAQQLEATKKREFEALQTEKDFLNQELAQLQASLRKMDAPGSQITPTNEFAFNKLPIVPENGTSGPTFTKRKKTFIPGGLDASFADDSHDNSAQI---RAGSPAKRCK-LTSESVSVQTDNIQNVRKAQIRPRHGQHTLMGQIARLNDSEPTVSLINRETDFLGLLFNGAPDCHQVNECL---QILGQSCL----EIQSSIFHGNETPASQLMRNMKNNLLAFKCILDHTASHVGLNHIDIIGLIIAVARPLIMIFMKNPDELANVFDTMSSVIGSYL-RVMDPDIILEKFQDICGLFELWMKAFKPEGPPKLGHKVITAILSSLTESLKYRYLEEAVCSRSSGENLCL---LPGLMTRIRAIVNQNPRLNDDQFLDLVQHFMAWMSAALTLAQEWHVPWVGSKSLADPSKN-CQKCRANVNITITCIAVRIIEKCLRYQDTSSPHPKLYSTARHVIIGLHQVWYWDPKFSESLDGQASLQRHYIWMTKQLPKVKLSLNFGRDGDKIVRDLS 768          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001806 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001806 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592781448|gb|GAXK01173120.1|6.287e-531.22TSA: Calanus finmarchicus comp133361_c2_seq1 trans... [more]
gi|592781447|gb|GAXK01173121.1|3.003e-430.87TSA: Calanus finmarchicus comp133361_c2_seq2 trans... [more]
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BLAST of EMLSAG00000001806 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000018060.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s130:11951... [more]
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BLAST of EMLSAG00000001806 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001806 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001806 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001806 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
snap_masked-scaffold344_size201325-processed-gene-1.139.679e-1022.20protein:Tk02540 transcript:snap_masked-scaffold344... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s130supercontigLSalAtl2s130:11951..14764 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s130-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001806 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001806EMLSAT00000001806-697653Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s130:11951..14764+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001806-684572 ID=EMLSAG00000001806-684572|Name=EMLSAG00000001806|organism=Lepeophtheirus salmonis|type=gene|length=2814bp|location=Sequence derived from alignment at LSalAtl2s130:11951..14764+ (Lepeophtheirus salmonis)
CAAAACACGATCTTCATTTCGATTATTAGAAGTATTCCATAAGCTTACAA ATTAATGAATCGCCGTCGTTCGGACGCCTTTCTCTCCAACAGTGGAATGG AAGACCTCTGGGATGACATTGACGACGCTGTCCTTTTACGAATGAGTCAA ATGGCTGAGAAGAAAGTGAGAGGAGTAAGACCGGAGTGCAGACTATAGTC TCATACTCAGTACAATACTTTACTTTATTTATTGGTCATACAAAATATTC AATATTAATATTGGTAATGTTTTTTCTATTACCTACAGAATGAATCAGAG AGTCAAGCAGATTTCCTTTCAGTTCTGAGTGAATCTGAAGAGGATTTGAA TTNNNNNNNNNNNNNNNNNNNNNNNNCAAATGGCTGAGAAGAAAGTGAGA GGAGTAAGACCGGAGNGCAGACTATAGTCTCATACTCAGTACAATACTTT ACTTTATTTATTGGTCATACAAAATATTCAATATTAATATTGGTAATGTT TTTTCTATTACCTACAGAATGAATCAGAGAGTCAAGCAGATTTCCTTTCA GTTCTGAGTGAATCTGAAGAGGATTTGAATTGCTTCACTGCTGATGAAAA TCGATTTAATCAAATGCAAACACAGTTTCCAGAGACTGCAAAAAACGTTT TTAAAAGACCCCTCTCACCTCCCTCTGATGTCTCAAAGTATGTCGCATTT TCCTGATCAATCCTATATTTTTACGTCAAATCCATTAAATAATATACCTA AATGTTTTATTTTAGAAAAAGAAAAAAAGATGAGGAGTCAATTTCCATTG ATAAGATCCTTGAAGATAATCGAAAGCTCAAATCAAGTAATCAAAAACTC AATGAGGAAATATACACAAAAAGGGTAATACAAAGTTATCATTATCATTT CTTTGTCATATTATCAAAGCTTGGTTCCTTAGGGGGAAGTTGCTCTTCTG CGGGCGGATATTCGTAAAAAAGAATCTTGTATCGAAATAGAGCGAAGTGA AAGACAAAAAATTCTTGCAACTAAAAATGAGGAATTGTCCAAGTTTAAAG AGCAATGCTCCAAAGCCAATGACGCTGTTAAGACTGACAATGAATTCCTT ACCCATCAATTAACGCAAACAGAAGAAAAACTTCGAAAAATGGAAATGTT GATGACAACAAATGGATCGCAAACTCCAGGGAGGAAAGTCCCTGAAAGAA GGTCCATTGGCTTTCCTGAGCACGATATGTATGTCGGTTTTGTGTATTGT TTTCAATATTCTCCAAAATATTTATCATTTTTAAATAGCTCTACGATAAT ACCTGATCCGAAACGAGTAAGTCCTCGTAAAAAAACTAGAGCTCTCAAGG ACGCCTCGTGTCAAGTTGAGTTGAAGAAGTTGAACTCCTTTGAATTAAAA GTTAAAGGAAGAAAGGGTAAATGCTAAATTAATTTTGACGTTAACGATTT ATTTTGTTATGCATACTTATTTTAGAGAATTTAACTTCTGCAAAATTAGT GTCTCTCATTGGCTCAGACATGGGTTTGGATATACTGAGTTCTCATTCAC CATTAGTTCAATGCCTTTATTCTACAGAAAGAACAAACGATGCTTGTCTA GCAACTGTGGAAGACATGATTAGCTCAATTAAGAACGATGTTGATGTGAA TCTAATGTTGAAAAAGCTAAAAGCTTCTAAATTAATTTTAGATGCTTCCA ACATTTTTGCAAAATACCTATCTCAAAAAAGTGTTATTCAGTTGTCAGAG TTATTGTCTACCAAAGACGTAAGTATGACAATTTATTTCCCTCATTTAGG AATAACAAATCTATATCAACTCCTAGGCTCAAAAGGAAACACTATTATCC TTGTTTTCCCTTGGAGAAGTCCTTGTGAGAAAACATTTAGTGAAACATGA AGACTTTCGCACTTTCGTAACCCGTCTTCAAGATCTATTCAAATCAATTA CCTCTATTGAATTAACTTCGTCTCTTTTGAACTTTTTGTCTGGCTCTGCA TTCTACCCAGATATTGCAAAACTCTATTGTCAAATGTCTACCAGTAAGAG GCAACACATTTTTTGTTTTATTATTGTGAATAATTTGATTCTTCACTTTC TAGATTCCTGTTTCATATTTGAGCTATGTTCTCTTGTGACTCGTGCCTCC TCATTCCATGGCAACGTGGCCTCCCTCATGAAAAACTTTTTAAAGTTTTT ATTTATTCACATGTCATCACCTGAAGATTTGAGTTGGATTGGTAGTTTAC CATCTAACGAAATTTGCAATCTATGTCGGATGGATATCCTGAAGACGGTG GCTTCTCTTACGGTCAAAATACTTCAAAAAGTTCAAAGCCTAATAGCTGC AGGTATTTTGATTTTTATCTCCCTCATTGTTATTGATCATCATTTGTACA TCTTATTATTTACTAATTGTAGATGCGCTATCCGAAGATTTCATTTTCTG TCTTAAAAAGTCGATTCATTGTCTTCATAAGCTATGGAGTACAGATCCTA ACTTTGTTCAAAATTTATCTGATAGTCCTGGATCTCAAAGAGAATATATA TGGGCAACAAAAAAGCTATCCAAGATGGAAACACTACTTCAACTTAGTCA GGAAGAGGCATCCATGCTCGCAGATTTAAATATACAGTACGATCAACGCT AAAATTTCATTCTTTTTTTCTCTCTATTATAATGTTTTTTATAGACTGGG ATTTAATATTTCTAATCAAGTAATTATTTGTTTAGTTTGCTGAGTCTTTT ATATTATTATAATATGTATTGCTTCAGTATTCGCTTTGTATGACTATGAT AATTAGTATTATGT
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