EMLSAG00000001806, EMLSAG00000001806-684572 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001806 vs. C. finmarchicus
Match: gi|592781448|gb|GAXK01173120.1| (TSA: Calanus finmarchicus comp133361_c2_seq1 transcribed RNA sequence) HSP 1 Score: 48.1358 bits (113), Expect = 6.287e-5 Identity = 69/221 (31.22%), Postives = 101/221 (45.70%), Query Frame = 0 Query: 16 EDLWDDIDDAVLLRMSQMAEK---KVRGNESESQADFLSVLSESE---EDLNCFTA------DENRFNQMQTQF--PETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGS--QTP-GRKV 219 +D +D DDA+LL SQM E K NE E A ++L + + +D+ A E R NQ T F P T + PP R + E I K E+ +LK + K +GE + LR+++ K+ IE ER ++K+ A +L K+ A+KT+ FL ++ Q +EKL+KME + GS TP RKV Sbjct: 406 DDWGEDGDDALLLAASQMVEPVAAKAETNEEELLA-MTAMLEDDDFGLDDVAGLEAAALEMEQEERLNQTVTVFNCPPTQSTSTQMFRQPPPPQPPMRGQAE----ISKAKEEQERLKKLHMKA-------QGEASFLRSELGKQSKEIEGERISKRKLEAELKSKLEAEKKVKENEISAIKTEKLFLVQEMQQLKEKLKKMESEVKREGSVGTTPRSRKV 1032
BLAST of EMLSAG00000001806 vs. C. finmarchicus
Match: gi|592781447|gb|GAXK01173121.1| (TSA: Calanus finmarchicus comp133361_c2_seq2 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 3.003e-4 Identity = 71/230 (30.87%), Postives = 103/230 (44.78%), Query Frame = 0 Query: 7 DAFLSNSGMEDLWDDIDDAVLLRMSQMAEK---KVRGNESESQADFLSVLSESE---EDLNCFTA------DENRFNQMQTQF--PETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGS--QTP-GRKV 219 D F +D +D DDA+LL SQM E K NE E A ++L + + +D+ A E R NQ T F P T + PP R + E I K E+ +LK + K +GE + LR+++ K+ IE ER ++K+ A +L K+ A+KT+ FL ++ Q +EKL+KME + GS TP RKV Sbjct: 385 DGF--GDSQDDWGEDGDDALLLAASQMVEPVAAKAETNEEELLA-MTAMLEDDDFGLDDVAGLEAAALEMEQEERLNQTVTVFNCPPTQSTSTQMFRQPPPPQPPMRGQAE----ISKAKEEQERLKKLHMKA-------QGEASFLRSELGKQSKEIEGERISKRKLEAELKSKLEAEKKVKENEISAIKTEKLFLVQEMQQLKEKLKKMESEVKREGSVGTTPRSRKV 1032
BLAST of EMLSAG00000001806 vs. L. salmonis peptides
Match: EMLSAP00000001806 (pep:novel supercontig:LSalAtl2s:LSalAtl2s130:11951:14764:1 gene:EMLSAG00000001806 transcript:EMLSAT00000001806 description:"augustus_masked-LSalAtl2s130-processed-gene-0.2") HSP 1 Score: 1229.54 bits (3180), Expect = 0.000e+0 Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 0 Query: 1 MNRRRSDAFLSNSGMEDLWDDIDDAVLLRMSQMAEKKVRGNESESQADFLSVLSESEEDLNCFTADENRFNQMQTQFPETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGSQTPGRKVPERRSIGFPEHDISTIIPDPKRVSPRKKTRALKDASCQVELKKLNSFELKVKGRKENLTSAKLVSLIGSDMGLDILSSHSPLVQCLYSTERTNDACLATVEDMISSIKNDVDVNLMLKKLKASKLILDASNIFAKYLSQKSVIQLSELLSTKDAQKETLLSLFSLGEVLVRKHLVKHEDFRTFVTRLQDLFKSITSIELTSSLLNFLSGSAFYPDIAKLYCQMSTNSCFIFELCSLVTRASSFHGNVASLMKNFLKFLFIHMSSPEDLSWIGSLPSNEICNLCRMDILKTVASLTVKILQKVQSLIAADALSEDFIFCLKKSIHCLHKLWSTDPNFVQNLSDSPGSQREYIWATKKLSKMETLLQLSQEEASMLADLNIQYDQR 603 MNRRRSDAFLSNSGMEDLWDDIDDAVLLRMSQMAEKKVRGNESESQADFLSVLSESEEDLNCFTADENRFNQMQTQFPETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGSQTPGRKVPERRSIGFPEHDISTIIPDPKRVSPRKKTRALKDASCQVELKKLNSFELKVKGRKENLTSAKLVSLIGSDMGLDILSSHSPLVQCLYSTERTNDACLATVEDMISSIKNDVDVNLMLKKLKASKLILDASNIFAKYLSQKSVIQLSELLSTKDAQKETLLSLFSLGEVLVRKHLVKHEDFRTFVTRLQDLFKSITSIELTSSLLNFLSGSAFYPDIAKLYCQMSTNSCFIFELCSLVTRASSFHGNVASLMKNFLKFLFIHMSSPEDLSWIGSLPSNEICNLCRMDILKTVASLTVKILQKVQSLIAADALSEDFIFCLKKSIHCLHKLWSTDPNFVQNLSDSPGSQREYIWATKKLSKMETLLQLSQEEASMLADLNIQYDQR Sbjct: 1 MNRRRSDAFLSNSGMEDLWDDIDDAVLLRMSQMAEKKVRGNESESQADFLSVLSESEEDLNCFTADENRFNQMQTQFPETAKNVFKRPLSPPSDVSKKRKKDEESISIDKILEDNRKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTHQLTQTEEKLRKMEMLMTTNGSQTPGRKVPERRSIGFPEHDISTIIPDPKRVSPRKKTRALKDASCQVELKKLNSFELKVKGRKENLTSAKLVSLIGSDMGLDILSSHSPLVQCLYSTERTNDACLATVEDMISSIKNDVDVNLMLKKLKASKLILDASNIFAKYLSQKSVIQLSELLSTKDAQKETLLSLFSLGEVLVRKHLVKHEDFRTFVTRLQDLFKSITSIELTSSLLNFLSGSAFYPDIAKLYCQMSTNSCFIFELCSLVTRASSFHGNVASLMKNFLKFLFIHMSSPEDLSWIGSLPSNEICNLCRMDILKTVASLTVKILQKVQSLIAADALSEDFIFCLKKSIHCLHKLWSTDPNFVQNLSDSPGSQREYIWATKKLSKMETLLQLSQEEASMLADLNIQYDQR 603
BLAST of EMLSAG00000001806 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold344_size201325-processed-gene-1.13 (protein:Tk02540 transcript:snap_masked-scaffold344_size201325-processed-gene-1.13-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC762700") HSP 1 Score: 60.4622 bits (145), Expect = 9.679e-10 Identity = 125/563 (22.20%), Postives = 238/563 (42.27%), Query Frame = 0 Query: 116 RKLKSSNQKLNEEIYTKRGEVALLRADIRKKESCIEIERSERQKILATKNEELSKFKEQCSKANDAVKTDNEFLTH-----------------QLTQTEEKLRKMEMLMTTNGSQTPG---RK---VPERRSIGFPE--HDISTIIPDPKRVSPRKKTRALKDASCQVELKKL-NSFELKVKGRKENLT----------SAKLVSLIGSDMG-LDILSSHSP----LVQCLYSTERTNDACLATVEDMISSI--KNDVDVNLMLKKLK----ASKLILD--ASNIFAKYLSQKSVI--QLSELLSTKDAQKETLLSLFSLGEVLVRKHLVKHEDFRTFVTRLQDL----------FKSITSIELT----SSLLNFLSGSAFYPDIAKLYCQMST--NSCFIFELCSLVTRASSF--------HGNVASLMKNFLKFLFIHMSSPED--LSWIGSL----PSNEICNLCRMDILKTVASLTVKILQKVQSLIAADALSEDFIFCLKKSIHCLHKLWSTDPNFVQNLSDSPGSQREYIWATKKLSKMETLLQLSQEEASMLADLN 597 ++L+ N+KL + Y+K GE++ L+ + E + ER ER+K+ + E + + + +A++T+ +FL Q+T T E ++ NG+ P RK +P F + HD S I + SP K+ + L S V+ + N + +++ R T S VSLI + L +L + +P + +CL + +CL ++ SSI N+ + +++ +K A K ILD AS++ ++ +I L+ + L ++F ++ +L + D + + QD+ FK +L +++L+ L+ S Y + + C S+ N C L L+TR + L+++F+ ++ ++ ++ + W+GS PS C CR ++ T+ + V+I++K + + I LH++W DP F ++L QR YIW TK+L K++ L ++ ++ DL+ Sbjct: 222 QRLRRENEKLVTDKYSKLGEISFLKTKKEEIEKKLVEERDERRKLELLQTETAQQLEATKKREFEALQTEKDFLNQELAQLQASLRKMDAPGSQITPTNEFAFNKLPIVPENGTSGPTFTKRKKTFIPGGLDASFADDSHDNSAQI---RAGSPAKRCK-LTSESVSVQTDNIQNVRKAQIRPRHGQHTLMGQIARLNDSEPTVSLINRETDFLGLLFNGAPDCHQVNECL---QILGQSCL----EIQSSIFHGNETPASQLMRNMKNNLLAFKCILDHTASHVGLNHIDIIGLIIAVARPLIMIFMKNPDELANVFDTMSSVIGSYL-RVMDPDIILEKFQDICGLFELWMKAFKPEGPPKLGHKVITAILSSLTESLKYRYLEEAVCSRSSGENLCL---LPGLMTRIRAIVNQNPRLNDDQFLDLVQHFMAWMSAALTLAQEWHVPWVGSKSLADPSKN-CQKCRANVNITITCIAVRIIEKCLRYQDTSSPHPKLYSTARHVIIGLHQVWYWDPKFSESLDGQASLQRHYIWMTKQLPKVKLSLNFGRDGDKIVRDLS 768 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001806 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001806 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000001806 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001806 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001806 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001806 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001806 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s130:11951..14764+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001806-684572 ID=EMLSAG00000001806-684572|Name=EMLSAG00000001806|organism=Lepeophtheirus salmonis|type=gene|length=2814bp|location=Sequence derived from alignment at LSalAtl2s130:11951..14764+ (Lepeophtheirus salmonis)back to top Add to Basket
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