EMLSAG00000001833, EMLSAG00000001833-684599 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001833
Unique NameEMLSAG00000001833-684599
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000001833 vs. L. salmonis peptides
Match: EMLSAP00000001833 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1317:37953:38135:-1 gene:EMLSAG00000001833 transcript:EMLSAT00000001833 description:"snap_masked-LSalAtl2s1317-processed-gene-0.0")

HSP 1 Score: 117.087 bits (292), Expect = 5.807e-36
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MYAPFSDSSLLDSNLSLLVSPIDSLLLVAAQKSVEPLPTEFSKPSETQFLDRKWLQQLIK 60
            MYAPFSDSSLLDSNLSLLVSPIDSLLLVAAQKSVEPLPTEFSKPSETQFLDRKWLQQLIK
Sbjct:    1 MYAPFSDSSLLDSNLSLLVSPIDSLLLVAAQKSVEPLPTEFSKPSETQFLDRKWLQQLIK 60
[Close]
BLAST of EMLSAG00000001833 vs. L. salmonis peptides
Match: EMLSAP00000002482 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1483:85786:88142:1 gene:EMLSAG00000002482 transcript:EMLSAT00000002482 description:"maker-LSalAtl2s1483-augustus-gene-0.22")

HSP 1 Score: 63.929 bits (154), Expect = 9.841e-14
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:   16 SLLVSPIDSLLLVAAQKSVEPLPTEFSKPSETQFLDRKWLQQLIK 60
            SL  SP D    VAAQ SVEPLPTEFSKPSETQ LDRK LQQL+K
Sbjct:  357 SLPASPGDPTTPVAAQNSVEPLPTEFSKPSETQVLDRKRLQQLVK 401
[Close]
BLAST of EMLSAG00000001833 vs. nr
Match: gi|225712458|gb|ACO12075.1| (Transcription initiation factor TFIID subunit 12 [Lepeophtheirus salmonis])

HSP 1 Score: 64.6994 bits (156), Expect = 1.771e-11
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0 
Query:   16 SLLVSPIDSLLLVAAQKSVEPLPTEFSKPSETQFLDRKWLQQLIK 60
            SL  SP D    VAAQ SVEPLPTEFSKPSETQ LDRK LQQL+K
Sbjct:   50 SLPASPGDPTTPVAAQNSVEPLPTEFSKPSETQVLDRKRLQQLVK 94
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001833 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001833 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001833 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000018335.807e-36100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1317:3795... [more]
EMLSAP000000024829.841e-1475.56pep:novel supercontig:LSalAtl2s:LSalAtl2s1483:8578... [more]
back to top
BLAST of EMLSAG00000001833 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001833 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000001833 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|225712458|gb|ACO12075.1|1.771e-1175.56Transcription initiation factor TFIID subunit 12 [... [more]
back to top
BLAST of EMLSAG00000001833 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1317supercontigLSalAtl2s1317:37953..38135 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1317-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteTranscription initiation factor TFIID subunit 12 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001833 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001833EMLSAT00000001833-697680Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1317:37953..38135-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001833-684599 ID=EMLSAG00000001833-684599|Name=EMLSAG00000001833|organism=Lepeophtheirus salmonis|type=gene|length=183bp|location=Sequence derived from alignment at LSalAtl2s1317:37953..38135- (Lepeophtheirus salmonis)
ATGTATGCCCCTTTCTCTGACTCCTCACTCCTTGACTCGAATCTTTCACT
ACTAGTCTCACCTATAGATTCTTTACTCCTCGTGGCTGCTCAAAAATCAG
TCGAACCCCTTCCTACGGAATTTTCAAAACCCTCAGAGACACAATTCCTT
GATCGCAAATGGCTTCAACAGCTCATCAAATAG
back to top
Add to Basket