EMLSAG00000001871, EMLSAG00000001871-684637 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001871
Unique NameEMLSAG00000001871-684637
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001871 vs. C. finmarchicus
Match: gi|592833596|gb|GAXK01123948.1| (TSA: Calanus finmarchicus comp667774_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 4.670e+0
Identity = 22/103 (21.36%), Postives = 47/103 (45.63%), Query Frame = 0 
Query:  486 LDEVPSSLEVVDGF---NKEIIDCTLCSMQSLLKEDMRLHYADHYEIEISRNYTSYKDEAGNLICRICFKII-EQSSESRHYALDHDVIRLYVTKEIYDNFFT 584
            L  + +SL +++      +++ +C  C  Q+ ++E M  H   H ++  ++             C  C K+  ++ S   H AL+H  ++++   E  + FFT
Sbjct:  322 LTAIAASLAIIEEKVVDRRKLYECKECQYQTKIREHMMNHCQKHTKMYCTK-------------CEHCSKMFRDKGSLKHHVALEHFGVKMFKCTECGNEFFT 591
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BLAST of EMLSAG00000001871 vs. C. finmarchicus
Match: gi|592833597|gb|GAXK01123947.1| (TSA: Calanus finmarchicus comp667774_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 4.720e+0
Identity = 22/92 (23.91%), Postives = 43/92 (46.74%), Query Frame = 0 
Query:  494 EVVDGFNKEIIDCTLCSMQSLLKEDMRLHYADHYEIEISRNYTSYKDEAGNLICRICFKII-EQSSESRHYALDHDVIRLYVTKEIYDNFFT 584
            +VVD   +++ +C  C  Q+ ++E M  H   H ++  ++             C  C K+  ++ S   H AL+H  ++++   E  + FFT
Sbjct:  433 KVVD--RRKLYECKECQYQTKIREHMMNHCQKHTKMYCTK-------------CEHCSKMFRDKGSLKHHVALEHFGVKMFKCTECGNEFFT 663
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BLAST of EMLSAG00000001871 vs. C. finmarchicus
Match: gi|592874600|gb|GAXK01082962.1| (TSA: Calanus finmarchicus comp656240_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 5.950e+0
Identity = 29/128 (22.66%), Postives = 64/128 (50.00%), Query Frame = 0 
Query:  458 SRQLSMTKNQSSASNYLNEGSSME--IKDLLDEVPSSLEVVDGFNKEIIDCTLCSMQSLLKEDMRLHYADHYEIEISRNYTSYKDEAGNLICRICFKIIEQSSESRHYALD--HDVIRLYVTKEIYDN 581
            +R L  T+N+++  +      S +  I  +  ++PS    +  +NK    C  C  +S+    +++H    ++ + ++NYT+  ++  +  C+IC + I+ +  S    LD  H+ ++L V  + Y+N
Sbjct:  849 TRDLPSTENKAAMEDVGKSSKSFKSAINIVDGKLPSQYNGIKWYNKVKYQCNFCDHESIGHNSIKVHIKASHKKKSTKNYTALTNDLYS--CKICEREIKLNFNSVWVHLDRIHN-LKLSVYTKKYEN 1223
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BLAST of EMLSAG00000001871 vs. C. finmarchicus
Match: gi|592818246|gb|GAXK01136322.1| (TSA: Calanus finmarchicus comp1168228_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 9.070e+0
Identity = 21/67 (31.34%), Postives = 30/67 (44.78%), Query Frame = 0 
Query:  503 IIDCTLCSMQSLLKEDMRLHYAD-HYEIEISRNYTSYKDEAGNLICRICFK-IIEQSSESRHYALDH 567
            ++DC+ C  +S  KED   HY + H E  ISR           L C  CF+  +     + H  L+H
Sbjct:  892 LLDCSFCDKKSKCKEDSVKHYKENHCENGISR-----------LTCTKCFQDFVSMPGLAEHIRLNH 1059
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BLAST of EMLSAG00000001871 vs. L. salmonis peptides
Match: EMLSAP00000001871 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1321:82319:84290:-1 gene:EMLSAG00000001871 transcript:EMLSAT00000001871 description:"snap_masked-LSalAtl2s1321-processed-gene-0.12")

HSP 1 Score: 1195.26 bits (3091), Expect = 0.000e+0
Identity = 585/585 (100.00%), Postives = 585/585 (100.00%), Query Frame = 0 
Query:    1 MSNMGSMWYHLIIRIKGIVSRLTHLPYKWIKRNQKIVKSKFKSTRTFHCTCSNRRRYSRLVLQYYKNKGIVMKPSSKTNNGSNVNIRNGEVPLSLEYERPIRETNSHGKELQIYSTKLTHNININYIESLSILYNYTFIGESLITSNYVKDPFKNIRNNVDKIVDEDIPASSKDNVFPHNQGIVMSEDNVQVIFSGSMQSTAELSDDIVVFPSSQNINYVDRLAVESLNELSTVETLDLDLNKLVVVNEKLKEKKFDIMETNEACPVESYIVQDKDGSQHSEIFLSSGLVKLYDNNYLIPEEIFEDFVDDSEGVNQMDSFNEICQLRSTNESISNPGETMVLREKRDDNTVLSFGNESPIKQRIDSLCSDPIEYVYVSSPPQIKIEFSIDNGKLNTGGKKVLHKKRDDQMALSFGNESPIKQRTDSLCSDSIECVSEGSHPQIKIESSIDIDKLYTTSRQLSMTKNQSSASNYLNEGSSMEIKDLLDEVPSSLEVVDGFNKEIIDCTLCSMQSLLKEDMRLHYADHYEIEISRNYTSYKDEAGNLICRICFKIIEQSSESRHYALDHDVIRLYVTKEIYDNFFTN 585
            MSNMGSMWYHLIIRIKGIVSRLTHLPYKWIKRNQKIVKSKFKSTRTFHCTCSNRRRYSRLVLQYYKNKGIVMKPSSKTNNGSNVNIRNGEVPLSLEYERPIRETNSHGKELQIYSTKLTHNININYIESLSILYNYTFIGESLITSNYVKDPFKNIRNNVDKIVDEDIPASSKDNVFPHNQGIVMSEDNVQVIFSGSMQSTAELSDDIVVFPSSQNINYVDRLAVESLNELSTVETLDLDLNKLVVVNEKLKEKKFDIMETNEACPVESYIVQDKDGSQHSEIFLSSGLVKLYDNNYLIPEEIFEDFVDDSEGVNQMDSFNEICQLRSTNESISNPGETMVLREKRDDNTVLSFGNESPIKQRIDSLCSDPIEYVYVSSPPQIKIEFSIDNGKLNTGGKKVLHKKRDDQMALSFGNESPIKQRTDSLCSDSIECVSEGSHPQIKIESSIDIDKLYTTSRQLSMTKNQSSASNYLNEGSSMEIKDLLDEVPSSLEVVDGFNKEIIDCTLCSMQSLLKEDMRLHYADHYEIEISRNYTSYKDEAGNLICRICFKIIEQSSESRHYALDHDVIRLYVTKEIYDNFFTN
Sbjct:    1 MSNMGSMWYHLIIRIKGIVSRLTHLPYKWIKRNQKIVKSKFKSTRTFHCTCSNRRRYSRLVLQYYKNKGIVMKPSSKTNNGSNVNIRNGEVPLSLEYERPIRETNSHGKELQIYSTKLTHNININYIESLSILYNYTFIGESLITSNYVKDPFKNIRNNVDKIVDEDIPASSKDNVFPHNQGIVMSEDNVQVIFSGSMQSTAELSDDIVVFPSSQNINYVDRLAVESLNELSTVETLDLDLNKLVVVNEKLKEKKFDIMETNEACPVESYIVQDKDGSQHSEIFLSSGLVKLYDNNYLIPEEIFEDFVDDSEGVNQMDSFNEICQLRSTNESISNPGETMVLREKRDDNTVLSFGNESPIKQRIDSLCSDPIEYVYVSSPPQIKIEFSIDNGKLNTGGKKVLHKKRDDQMALSFGNESPIKQRTDSLCSDSIECVSEGSHPQIKIESSIDIDKLYTTSRQLSMTKNQSSASNYLNEGSSMEIKDLLDEVPSSLEVVDGFNKEIIDCTLCSMQSLLKEDMRLHYADHYEIEISRNYTSYKDEAGNLICRICFKIIEQSSESRHYALDHDVIRLYVTKEIYDNFFTN 585
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001871 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001871 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592833596|gb|GAXK01123948.1|4.670e+021.36TSA: Calanus finmarchicus comp667774_c1_seq2 trans... [more]
gi|592833597|gb|GAXK01123947.1|4.720e+023.91TSA: Calanus finmarchicus comp667774_c1_seq1 trans... [more]
gi|592874600|gb|GAXK01082962.1|5.950e+022.66TSA: Calanus finmarchicus comp656240_c0_seq1 trans... [more]
gi|592818246|gb|GAXK01136322.1|9.070e+031.34TSA: Calanus finmarchicus comp1168228_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001871 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000018710.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1321:8231... [more]
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BLAST of EMLSAG00000001871 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001871 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001871 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001871 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1321supercontigLSalAtl2s1321:82319..84290 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1321-processed-gene-0.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001871 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001871EMLSAT00000001871-697718Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1321:82319..84290-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001871-684637 ID=EMLSAG00000001871-684637|Name=EMLSAG00000001871|organism=Lepeophtheirus salmonis|type=gene|length=1972bp|location=Sequence derived from alignment at LSalAtl2s1321:82319..84290- (Lepeophtheirus salmonis)
ATGTCCAACATGGGTTCAATGTGGTATCATCTTATTATTAGGATCAAAGG
AATTGTTTCTCGTTTAACGCATCTCCCGTATAAATGGATTAAAAGAAATC
AGAAGATAGTCAAGTCCAAATTCAAATCTACTCGCACATTTCATTGTACT
TGTAGTAATCGTAGAAGGTACTCTCGTCTGGTACTTCAATATTACAAAAA
TAAAGGAATAGTTATGAAGCCAAGCTCCAAAACAAATAATGGGTCGAATG
TTAACATTCGAAACGGTGAAGTTCCTTTAAGCCTTGAATATGAGCGTCCT
ATAAGAGAAACAAATAGTCATGGTAAAGAACTTCAGATATATTCGACTAA
GCTCACTCACAATATCAATATTAATTACATTGAAAGCTTATCAATATTAT
ATAATTACACATTCATTGGGGAATCCCTAATCACTTCAAATTATGTGAAA
GACCCTTTCAAGAACATACGGAATAATGTCGATAAAATTGTTGATGAGGA
TATACCTGCATCGAGTAAAGATAATGTTTTTCCTCACAATCAAGGAATTG
TGATGTCAGAAGATAACGTACAAGTTATATTTTCAGGCTCGATGCAATCT
ACTGCAGAGTTATCCGATGATATTGTGGTTTTCCCATCCTCTCAAAATAT
AAATTATGTTGATCGATTAGCAGTTGAATCGTTGAATGAGTTATCTACTG
TAGAAACGTTGGACTTGGATTTAAATAAACTGGTTGTAGTAAATGAAAAG
CTCAAAGAGAAAAAGTTTGATATTATGGAGACAAATGAAGCATGTCCTGT
AGAATCATACATCGTTCAAGATAAAGACGGATCACAACATTCAGAAATTT
TTCTGAGTTCAGGTCTGGTTAAACTCTATGATAATAATTATTTAATACCT
GAAGAAATCTTTGAGGATTTTGTTGATGATAGTGAAGGCGTAAACCAAAT
GGATTCATTCAATGAAATTTGTCAACTTAGGTCTACCAATGAATCCATCT
CAAATCCAGGAGAGACAATGGTTCTCCGTGAGAAGAGAGACGATAATACA
GTGTTATCGTTCGGAAATGAGTCCCCCATAAAGCAAAGAATTGATTCTTT
GTGTAGCGATCCAATTGAATATGTTTATGTAAGCAGTCCTCCTCAGATAA
AGATTGAGTTTTCTATTGACAATGGTAAGTTAAATACAGGCGGGAAGAAG
GTTCTCCACAAGAAGAGAGACGATCAAATGGCATTATCTTTTGGAAATGA
GTCTCCCATAAAACAAAGAACTGATTCTTTGTGTAGTGATTCAATTGAAT
GTGTTAGTGAAGGGAGTCATCCTCAGATTAAGATTGAATCTTCCATTGAC
ATTGATAAGTTATATACAACAAGTCGACAATTATCAATGACGAAAAATCA
ATCTTCCGCGTCAAGTCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTGTTAAAGAGTGTGTCTACTGAGA
TGTCATTGCGTAGAAAAGGAACAATGCTATCCATTAAAGATATTCCTTAT
GTAAACGAAGGTAAATTGCTATAATTTTACAGTTTTTTTATCAGTGCATA
ATTTATTAGGCTAATTTATATTTTATAGATTATTTAAATGAAGGATCTTC
GATGGAAATTAAAGATTTACTTGATGAAGTCCCGAGTTCCCTTGAGGTAG
TGGATGGGTTTAATAAAGAAATTATCGATTGTACTTTGTGCTCCATGCAA
AGCCTCCTTAAAGAAGATATGCGACTACACTATGCTGATCATTACGAAAT
AGAAATATCACGAAACTATACATCTTACAAGGATGAAGCTGGAAATCTCA
TTTGTCGGATATGTTTTAAAATAATTGAGCAAAGTAGTGAGAGTAGACAT
TATGCATTGGATCATGATGTCATTAGATTGTATGTTACCAAGGAGATCTA
TGACAACTTTTTTACAAACTAA
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