EMLSAG00000002152, EMLSAG00000002152-684918 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002152
Unique NameEMLSAG00000002152-684918
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002152 vs. C. finmarchicus
Match: gi|592885092|gb|GAXK01073283.1| (TSA: Calanus finmarchicus comp149300_c1_seq34 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.406e+0
Identity = 13/39 (33.33%), Postives = 24/39 (61.54%), Query Frame = 0 
Query:    7 DPEQNNKGIEPSVLEPVDVDDNSEFPNDENILDPMTPKS 45
            D ++ +  ++  VL+ ++VDD ++  NDENI D +   S
Sbjct:  621 DQDETDFCVKEEVLDTIEVDDETKTSNDENIADEVNAAS 737
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BLAST of EMLSAG00000002152 vs. C. finmarchicus
Match: gi|592770623|gb|GAXK01183945.1| (TSA: Calanus finmarchicus comp57790_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.232e+0
Identity = 15/38 (39.47%), Postives = 17/38 (44.74%), Query Frame = 0 
Query:   42 TPKSQRKRRSLTEKSTNNPLTPSNKSINPKSIYFETDL 79
             P+   KRRS+TE              N  SI FETDL
Sbjct: 2339 APRRGMKRRSITEGGPQTAAAVVTAVQNSNSIIFETDL 2452
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BLAST of EMLSAG00000002152 vs. C. finmarchicus
Match: gi|592810665|gb|GAXK01143903.1| (TSA: Calanus finmarchicus comp480782_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.899e+0
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 0 
Query:   40 PMTPKSQRKRRSLTEKS 56
            PMTP+ QR RRS + KS
Sbjct: 3940 PMTPQEQRPRRSFSRKS 3990
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BLAST of EMLSAG00000002152 vs. L. salmonis peptides
Match: EMLSAP00000002152 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:393773:394012:-1 gene:EMLSAG00000002152 transcript:EMLSAT00000002152 description:"snap_masked-LSalAtl2s139-processed-gene-4.24")

HSP 1 Score: 158.303 bits (399), Expect = 1.399e-51
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 
Query:    1 MVLDGHDPEQNNKGIEPSVLEPVDVDDNSEFPNDENILDPMTPKSQRKRRSLTEKSTNNPLTPSNKSINPKSIYFETDL 79
            MVLDGHDPEQNNKGIEPSVLEPVDVDDNSEFPNDENILDPMTPKSQRKRRSLTEKSTNNPLTPSNKSINPKSIYFETDL
Sbjct:    1 MVLDGHDPEQNNKGIEPSVLEPVDVDDNSEFPNDENILDPMTPKSQRKRRSLTEKSTNNPLTPSNKSINPKSIYFETDL 79
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002152 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002152 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592885092|gb|GAXK01073283.1|2.406e+033.33TSA: Calanus finmarchicus comp149300_c1_seq34 tran... [more]
gi|592770623|gb|GAXK01183945.1|3.232e+039.47TSA: Calanus finmarchicus comp57790_c1_seq1 transc... [more]
gi|592810665|gb|GAXK01143903.1|7.899e+064.71TSA: Calanus finmarchicus comp480782_c0_seq1 trans... [more]
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BLAST of EMLSAG00000002152 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000021521.399e-51100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s139:39377... [more]
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BLAST of EMLSAG00000002152 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002152 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002152 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002152 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s139supercontigLSalAtl2s139:393773..394012 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s139-processed-gene-4.24
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002152 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002152EMLSAT00000002152-697999Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s139:393773..394012-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002152-684918 ID=EMLSAG00000002152-684918|Name=EMLSAG00000002152|organism=Lepeophtheirus salmonis|type=gene|length=240bp|location=Sequence derived from alignment at LSalAtl2s139:393773..394012- (Lepeophtheirus salmonis)
ATGGTCCTAGACGGCCATGATCCTGAACAAAATAATAAAGGAATTGAGCC
TAGTGTTTTAGAGCCAGTTGATGTGGATGACAATTCCGAATTTCCCAATG
ATGAAAATATCCTTGACCCAATGACTCCAAAATCTCAACGAAAAAGGCGT
TCCTTGACAGAAAAGTCTACAAATAATCCTCTTACACCCTCGAATAAGTC
GATTAATCCTAAAAGTATTTACTTTGAAACTGATCTTTAA
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