EMLSAG00000002322, EMLSAG00000002322-685088 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002322 vs. C. finmarchicus
Match: gi|592840121|gb|GAXK01117423.1| (TSA: Calanus finmarchicus comp303116_c2_seq1 transcribed RNA sequence) HSP 1 Score: 49.2914 bits (116), Expect = 1.575e-7 Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0
Query: 6 TSWTDDIPRCRRTGXGTSSNETL----SRHRFHALEDRAFHFR 44
TSWTDD+P C+ +G G+SSNE R H+ EDR+F FR
Sbjct: 1238 TSWTDDVPTCKDSGVGSSSNEIYRKDGRRVPMHSYEDRSFRFR 1366
BLAST of EMLSAG00000002322 vs. C. finmarchicus
Match: gi|592796116|gb|GAXK01158452.1| (TSA: Calanus finmarchicus comp67726_c3_seq4 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 2.510e+0 Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 0
Query: 13 PRCRRTGXGTSSNETLSRHRFHALEDRAFH 42
PRCRRTG G S + S +DRA H
Sbjct: 293 PRCRRTGVGRSCDLPSSCSCSRLDQDRAIH 382
BLAST of EMLSAG00000002322 vs. C. finmarchicus
Match: gi|592796117|gb|GAXK01158451.1| (TSA: Calanus finmarchicus comp67726_c3_seq3 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 2.604e+0 Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 0
Query: 13 PRCRRTGXGTSSNETLSRHRFHALEDRAFH 42
PRCRRTG G S + S +DRA H
Sbjct: 425 PRCRRTGVGRSCDLPSSCSCSRLDQDRAIH 514
BLAST of EMLSAG00000002322 vs. C. finmarchicus
Match: gi|592796123|gb|GAXK01158445.1| (TSA: Calanus finmarchicus comp67726_c2_seq1 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 2.874e+0 Identity = 14/30 (46.67%), Postives = 16/30 (53.33%), Query Frame = 0
Query: 13 PRCRRTGXGTSSNETLSRHRFHALEDRAFH 42
PRCRRTG G S + S +DRA H
Sbjct: 660 PRCRRTGVGRSCDLPSSCSCSRLDQDRAIH 749
BLAST of EMLSAG00000002322 vs. C. finmarchicus
Match: gi|592769459|gb|GAXK01185109.1| (TSA: Calanus finmarchicus comp5432237_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 4.149e+0 Identity = 13/45 (28.89%), Postives = 24/45 (53.33%), Query Frame = 0
Query: 16 RRTGXGTSSNETLSRHRFHALEDRAFHFRLTGMSFFGLGILWMTS 60
RR G + ++ +H+F L + F+FRL+ ++ I W+ S
Sbjct: 275 RRGGAVSLNSSIFLQHKFFLLSIQNFNFRLSFDFYWYQAIAWLKS 409
BLAST of EMLSAG00000002322 vs. C. finmarchicus
Match: gi|592942721|gb|GAXK01015832.1| (TSA: Calanus finmarchicus comp505197_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.1794 bits (56), Expect = 8.071e+0 Identity = 14/35 (40.00%), Postives = 16/35 (45.71%), Query Frame = 0
Query: 14 RCRRTGXGTSSNETLSRHRFHALEDRAFHFRLTGM 48
RC R+ T S R H+L D F LTGM
Sbjct: 256 RCNRSWSATRSERVQPR*AQHSLTDSQVFFSLTGM 360
BLAST of EMLSAG00000002322 vs. L. salmonis peptides
Match: EMLSAP00000002322 (pep:novel supercontig:LSalAtl2s:LSalAtl2s143:490738:490926:-1 gene:EMLSAG00000002322 transcript:EMLSAT00000002322 description:"snap_masked-LSalAtl2s143-processed-gene-5.10") HSP 1 Score: 126.716 bits (317), Expect = 9.364e-40 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
Query: 1 MECPETSWTDDIPRCRRTGXGTSSNETLSRHRFHALEDRAFHFRLTGMSFFGLGILWMTSSH 62
MECPETSWTDDIPRCRRTGXGTSSNETLSRHRFHALEDRAFHFRLTGMSFFGLGILWMTSSH
Sbjct: 1 MECPETSWTDDIPRCRRTGXGTSSNETLSRHRFHALEDRAFHFRLTGMSFFGLGILWMTSSH 62
BLAST of EMLSAG00000002322 vs. Select Arthropod Genomes
Match: gb|KFM70068.1| (TGF-beta-activated kinase 1 and MAP3K7-binding protein 1, partial [Stegodyphus mimosarum]) HSP 1 Score: 49.2914 bits (116), Expect = 5.433e-8 Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 0
Query: 1 MECPETSWTDDIPRCRRTGXGTSSNETLS----RHRFHALEDRAFHFRLTGMSFF 51
++ P SWTDD+P C +G G ++N+ R HA EDR+FHFR ++F
Sbjct: 21 LQEPCHSWTDDLPYCPLSGVGFATNQKYRVDGFRREEHAFEDRSFHFRYDEDTYF 75
BLAST of EMLSAG00000002322 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold172_size289735-snap-gene-1.25 (protein:Tk06516 transcript:maker-scaffold172_size289735-snap-gene-1.25-mRNA-1 annotation:"tgf-beta-activated kinase 1 and map3k7-binding protein 1") HSP 1 Score: 50.0618 bits (118), Expect = 2.053e-9 Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 0
Query: 5 ETSWTDDIPRCRRTGXGTSSNETL----SRHRFHALEDRAFHF 43
ETSWTDDIP CR G G+++NE R H ++DR FHF
Sbjct: 2 ETSWTDDIPLCRAAGIGSANNEIYRKNGKRVEMHPMQDRYFHF 44 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002322 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002322 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000002322 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000002322 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002322 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000002322 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000002322 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s143:490738..490926- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002322-685088 ID=EMLSAG00000002322-685088|Name=EMLSAG00000002322|organism=Lepeophtheirus salmonis|type=gene|length=189bp|location=Sequence derived from alignment at LSalAtl2s143:490738..490926- (Lepeophtheirus salmonis)back to top Add to Basket
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