EMLSAG00000002340, EMLSAG00000002340-685106 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002340
Unique NameEMLSAG00000002340-685106
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002340 vs. C. finmarchicus
Match: gi|592924188|gb|GAXK01034227.1| (TSA: Calanus finmarchicus comp2783555_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.396e+0
Identity = 10/27 (37.04%), Postives = 19/27 (70.37%), Query Frame = 0 
Query:   12 VGVTTSEVSIPSFLFEGSWLXMKEERS 38
            + +  + ++IPS+ F  SW+ MK+E+S
Sbjct:  225 LNICLAILTIPSWKFSTSWIQMKQEKS 305
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BLAST of EMLSAG00000002340 vs. C. finmarchicus
Match: gi|592877634|gb|GAXK01080111.1| (TSA: Calanus finmarchicus comp565371_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 2.676e+0
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 0 
Query:   50 SVADATAYSKGPITLECIQLTEEG 73
            S+ +AT  SKGPI L+ +QL EEG
Sbjct:  101 SIVEAT--SKGPIILKVVQLQEEG 166
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BLAST of EMLSAG00000002340 vs. C. finmarchicus
Match: gi|592877635|gb|GAXK01080110.1| (TSA: Calanus finmarchicus comp565371_c5_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 3.112e+0
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 0 
Query:   50 SVADATAYSKGPITLECIQLTEEG 73
            S+ +AT  SKGPI L+ +QL EEG
Sbjct:  214 SIVEAT--SKGPIILKVVQLQEEG 279
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BLAST of EMLSAG00000002340 vs. C. finmarchicus
Match: gi|592863991|gb|GAXK01093571.1| (TSA: Calanus finmarchicus comp373078_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 9.439e+0
Identity = 14/31 (45.16%), Postives = 17/31 (54.84%), Query Frame = 0 
Query:   28 GSWLXMKEERSGAVEYLTEFGVSVADATAYS 58
            G W+  KE R    +YLT  G S+ D T YS
Sbjct:  322 GEWMDDKELRGSEYQYLTS-GQSLRDFTDYS 411
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BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000002340 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1440:63867:64312:1 gene:EMLSAG00000002340 transcript:EMLSAT00000002340 description:"augustus-LSalAtl2s1440-processed-gene-0.4")

HSP 1 Score: 143.665 bits (361), Expect = 4.924e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
            MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG
Sbjct:    1 MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
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BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000011081 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7500:2079:2778:1 gene:EMLSAG00000011081 transcript:EMLSAT00000011081 description:"augustus-LSalAtl2s7500-processed-gene-0.0")

HSP 1 Score: 129.413 bits (324), Expect = 2.627e-39
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
            MKCFIIVALVLVGVTTSEVS+PSFLFEGSWLXMKEE  GAVE LTE GVSVA+AT YS GPITLECIQLTEEG
Sbjct:    1 MKCFIIVALVLVGVTTSEVSMPSFLFEGSWLXMKEEXRGAVEXLTEXGVSVANATTYSNGPITLECIQLTEEG 73
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BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000007420 (pep:novel supercontig:LSalAtl2s:LSalAtl2s421:485845:486576:1 gene:EMLSAG00000007420 transcript:EMLSAT00000007420 description:"augustus-LSalAtl2s421-processed-gene-3.2")

HSP 1 Score: 125.176 bits (313), Expect = 1.346e-37
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
            MKCFIIVALVLVGVTTSEVS PSFLF+GSWL M E+RSG VEYL + GVS A+ATAYSKGPIT++CIQLTEEG
Sbjct:    1 MKCFIIVALVLVGVTTSEVSKPSFLFQGSWLEMIEKRSGTVEYLMKLGVSEANATAYSKGPITMQCIQLTEEG 73
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BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000012552 (pep:novel supercontig:LSalAtl2s:LSalAtl2s9257:1325:1800:-1 gene:EMLSAG00000012552 transcript:EMLSAT00000012552 description:"augustus-LSalAtl2s9257-processed-gene-0.0")

HSP 1 Score: 116.316 bits (290), Expect = 7.546e-35
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEE 72
            MKCFIIVALVLVGVTTSEVS PSFLFEGSWL MK++R+G V Y    GVS A+ATAYSKGP+T+ECIQLTE 
Sbjct:    1 MKCFIIVALVLVGVTTSEVSKPSFLFEGSWLEMKDKRTGVVXYXQLLGVSQANATAYSKGPMTMECIQLTEN 72
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BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000003905 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2111:248:1162:1 gene:EMLSAG00000003905 transcript:EMLSAT00000003905 description:"augustus-LSalAtl2s2111-processed-gene-0.0")

HSP 1 Score: 115.931 bits (289), Expect = 4.847e-34
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
            MKCFIIVALVLVGVTTSEVS PSFLF+GSWL MKE RSG VE+L +  +S  +A AYSKGP T++CIQLTEEG
Sbjct:    1 MKCFIIVALVLVGVTTSEVSKPSFLFQGSWLEMKERRSGIVEFLMQLEISEGNAVAYSKGPTTMQCIQLTEEG 73
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BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000008983 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5623:1978:2679:1 gene:EMLSAG00000008983 transcript:EMLSAT00000008983 description:"augustus-LSalAtl2s5623-processed-gene-0.0")

HSP 1 Score: 108.612 bits (270), Expect = 3.203e-31
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPSFLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
            MKC I VALVLVG+TTSEVS PSFLFEGSWL MKE R+G VE L  FG++   A AYS GP+T+ECI+LTE G
Sbjct:    1 MKCSIFVALVLVGITTSEVSKPSFLFEGSWLEMKESRTGVVEXLKLFGINETSANAYSNGPMTMECIZLTENG 73
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BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000007417 (pep:novel supercontig:LSalAtl2s:LSalAtl2s421:404527:405169:-1 gene:EMLSAG00000007417 transcript:EMLSAT00000007417 description:"augustus-LSalAtl2s421-processed-gene-3.33")

HSP 1 Score: 93.9745 bits (232), Expect = 1.663e-25
Identity = 48/76 (63.16%), Postives = 57/76 (75.00%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPS---FLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
            MKCFIIVALVLVG +TSE    S   FLFEGSWL MKE R+  VEYL ++ +S  +AT Y+ GP T+ECIQLTE+G
Sbjct:    1 MKCFIIVALVLVGTSTSESCTSSESSFLFEGSWLEMKENRTNVVEYLMQYNISRENATKYNNGPTTMECIQLTEDG 76
[Close]
BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000008319 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5045:700:1299:1 gene:EMLSAG00000008319 transcript:EMLSAT00000008319 description:"augustus-LSalAtl2s5045-processed-gene-0.1")

HSP 1 Score: 92.8189 bits (229), Expect = 3.627e-25
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPS---FLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
            MKCFIIVALVLVG +TSE S  S    LFEGSWL MKE R+  VEYLT +G+S  +AT Y+ GP T+ECIQLTE+G
Sbjct:    1 MKCFIIVALVLVGTSTSESSTSSMSSLLFEGSWLEMKEHRTNVVEYLTVYGISSENATKYNNGPTTMECIQLTEDG 76
[Close]
BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Match: EMLSAP00000002564 (pep:novel supercontig:LSalAtl2s:LSalAtl2s15141:108:747:-1 gene:EMLSAG00000002564 transcript:EMLSAT00000002564 description:"augustus-LSalAtl2s15141-processed-gene-0.0")

HSP 1 Score: 91.2781 bits (225), Expect = 1.607e-24
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0 
Query:    1 MKCFIIVALVLVGVTTSEVSIPS---FLFEGSWLXMKEERSGAVEYLTEFGVSVADATAYSKGPITLECIQLTEEG 73
            MKCFIIVALVLVG +TSE    S    LFEGSWL MKE R+  VEYL  +G+S  +AT Y+ GP T+ECIQLTE+G
Sbjct:    1 MKCFIIVALVLVGTSTSESXTXSMSSLLFEGSWLEMKEHRTNVVEYLRVYGISSENATKYNNGPTTMECIQLTEDG 76
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002340 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002340 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592924188|gb|GAXK01034227.1|2.396e+037.04TSA: Calanus finmarchicus comp2783555_c0_seq1 tran... [more]
gi|592877634|gb|GAXK01080111.1|2.676e+058.33TSA: Calanus finmarchicus comp565371_c6_seq1 trans... [more]
gi|592877635|gb|GAXK01080110.1|3.112e+058.33TSA: Calanus finmarchicus comp565371_c5_seq2 trans... [more]
gi|592863991|gb|GAXK01093571.1|9.439e+045.16TSA: Calanus finmarchicus comp373078_c1_seq2 trans... [more]
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BLAST of EMLSAG00000002340 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 9
Match NameE-valueIdentityDescription
EMLSAP000000023404.924e-46100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1440:6386... [more]
EMLSAP000000110812.627e-3989.04pep:novel supercontig:LSalAtl2s:LSalAtl2s7500:2079... [more]
EMLSAP000000074201.346e-3782.19pep:novel supercontig:LSalAtl2s:LSalAtl2s421:48584... [more]
EMLSAP000000125527.546e-3577.78pep:novel supercontig:LSalAtl2s:LSalAtl2s9257:1325... [more]
EMLSAP000000039054.847e-3475.34pep:novel supercontig:LSalAtl2s:LSalAtl2s2111:248:... [more]
EMLSAP000000089833.203e-3169.86pep:novel supercontig:LSalAtl2s:LSalAtl2s5623:1978... [more]
EMLSAP000000074171.663e-2563.16pep:novel supercontig:LSalAtl2s:LSalAtl2s421:40452... [more]
EMLSAP000000083193.627e-2565.79pep:novel supercontig:LSalAtl2s:LSalAtl2s5045:700:... [more]
EMLSAP000000025641.607e-2463.16pep:novel supercontig:LSalAtl2s:LSalAtl2s15141:108... [more]
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BLAST of EMLSAG00000002340 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002340 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002340 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002340 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1440supercontigLSalAtl2s1440:63867..64312 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s1440-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002340 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002340EMLSAT00000002340-698187Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1440:63867..64312+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002340-685106 ID=EMLSAG00000002340-685106|Name=EMLSAG00000002340|organism=Lepeophtheirus salmonis|type=gene|length=446bp|location=Sequence derived from alignment at LSalAtl2s1440:63867..64312+ (Lepeophtheirus salmonis)
GTTGGAGTTAATCATGAAGTGTTTTATCATTGTAGCTCTTGTCTTGGTTG
GAGTAACGACTTCTGAGGTTTCCATGTAAGTTGTATTTCTTTTGAAATAA
ATCTTTATTAAATTTTATCTCCGGACAAAACAGACCATCCTTTTTGTTTG
AAGGATCATGGCTTMAAATGAAGGAAGAACGAAGTGGTGCTGTAGAGTAC
TTAACGGAGTTCGGCGTTAGCGTGGCCGACGCCACTGCATATAGCAAAGG
TCCAATTACTTTGGAATGTATTCAATTGACTGAAGAGGGTTAAAAAATCA
CAGGAATACGTAATGTTCCCAAATTCCATGTTTATATTTTAATAATACTT
TACTTTTAGAGCCCAATGGTGATTCCTATAATACATCTATCACATGGAGA
AAGGGAGCGAAATTGCCATACAAGAGTTTAACAGGACAGAGTTTAA
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