EMLSAG00000002345, EMLSAG00000002345-685111 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002345
Unique NameEMLSAG00000002345-685111
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002345 vs. C. finmarchicus
Match: gi|592902445|gb|GAXK01055930.1| (TSA: Calanus finmarchicus comp867858_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 7.428e-1
Identity = 37/124 (29.84%), Postives = 54/124 (43.55%), Query Frame = 0 
Query:   49 YSKDVALQTTSIPPHSGVWTENVNTIRGLS-TRVLSRDIQRFLANDTLY--LTQKLLEANKELGSMELESY--LDIYKKNKEEC-TNSNSESFEIPELGRLEESLAKMGCFVNDKLKPIFKNVD 166
            YSK +A+   ++P  S   TENV T+   +   +L    Q FL  + L   LT++L   +K++  + + S   LDI     E   T S    F +    RL        C  N  LK +F  VD
Sbjct: 1022 YSKMLAMNIIAMPSMSSFVTENVTTVPA*NGNSILHMKFQAFLECEGLATNLTRQLFSVHKDVMRLNIFSCTELDITNCTTEIWRTISFHHGFLVLN*TRLPSKF----CVANITLKVLFCPVD 1381
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BLAST of EMLSAG00000002345 vs. C. finmarchicus
Match: gi|592902446|gb|GAXK01055929.1| (TSA: Calanus finmarchicus comp867858_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 7.754e-1
Identity = 37/124 (29.84%), Postives = 54/124 (43.55%), Query Frame = 0 
Query:   49 YSKDVALQTTSIPPHSGVWTENVNTIRGLS-TRVLSRDIQRFLANDTLY--LTQKLLEANKELGSMELESY--LDIYKKNKEEC-TNSNSESFEIPELGRLEESLAKMGCFVNDKLKPIFKNVD 166
            YSK +A+   ++P  S   TENV T+   +   +L    Q FL  + L   LT++L   +K++  + + S   LDI     E   T S    F +    RL        C  N  LK +F  VD
Sbjct: 1349 YSKMLAMNIIAMPSMSSFVTENVTTVPA*NGNSILHMKFQAFLECEGLATNLTRQLFSVHKDVMRLNIFSCTELDITNCTTEIWRTISFHHGFLVLN*TRLPSKF----CVANITLKVLFCPVD 1708
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BLAST of EMLSAG00000002345 vs. C. finmarchicus
Match: gi|592759930|gb|GAXK01194483.1| (TSA: Calanus finmarchicus comp1474701_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.027e+0
Identity = 14/21 (66.67%), Postives = 14/21 (66.67%), Query Frame = 0 
Query:   36 KFQFLRSEIKHPNYSKDVALQ 56
            K   L SEIKHP  SKD ALQ
Sbjct:  309 KLCSLESEIKHPQPSKDTALQ 371
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BLAST of EMLSAG00000002345 vs. L. salmonis peptides
Match: EMLSAP00000002345 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1446:12307:13285:-1 gene:EMLSAG00000002345 transcript:EMLSAT00000002345 description:"maker-LSalAtl2s1446-snap-gene-0.17")

HSP 1 Score: 414.846 bits (1065), Expect = 1.002e-148
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 
Query:    1 MKDSLSNEHVRLAISQSISHTLNNYLHIETRSLVYKFQFLRSEIKHPNYSKDVALQTTSIPPHSGVWTENVNTIRGLSTRVLSRDIQRFLANDTLYLTQKLLEANKELGSMELESYLDIYKKNKEECTNSNSESFEIPELGRLEESLAKMGCFVNDKLKPIFKNVDRVYTLSFDDGYALGMTACTTEFEDQVKLILERKF 200
            MKDSLSNEHVRLAISQSISHTLNNYLHIETRSLVYKFQFLRSEIKHPNYSKDVALQTTSIPPHSGVWTENVNTIRGLSTRVLSRDIQRFLANDTLYLTQKLLEANKELGSMELESYLDIYKKNKEECTNSNSESFEIPELGRLEESLAKMGCFVNDKLKPIFKNVDRVYTLSFDDGYALGMTACTTEFEDQVKLILERKF
Sbjct:    1 MKDSLSNEHVRLAISQSISHTLNNYLHIETRSLVYKFQFLRSEIKHPNYSKDVALQTTSIPPHSGVWTENVNTIRGLSTRVLSRDIQRFLANDTLYLTQKLLEANKELGSMELESYLDIYKKNKEECTNSNSESFEIPELGRLEESLAKMGCFVNDKLKPIFKNVDRVYTLSFDDGYALGMTACTTEFEDQVKLILERKF 200
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002345 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002345 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592902445|gb|GAXK01055930.1|7.428e-129.84TSA: Calanus finmarchicus comp867858_c0_seq2 trans... [more]
gi|592902446|gb|GAXK01055929.1|7.754e-129.84TSA: Calanus finmarchicus comp867858_c0_seq1 trans... [more]
gi|592759930|gb|GAXK01194483.1|2.027e+066.67TSA: Calanus finmarchicus comp1474701_c0_seq4 tran... [more]
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BLAST of EMLSAG00000002345 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000023451.002e-148100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1446:1230... [more]
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BLAST of EMLSAG00000002345 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002345 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002345 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002345 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1446supercontigLSalAtl2s1446:12307..13285 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1446-snap-gene-0.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002345 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002345EMLSAT00000002345-698192Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1446:12307..13285-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002345-685111 ID=EMLSAG00000002345-685111|Name=EMLSAG00000002345|organism=Lepeophtheirus salmonis|type=gene|length=979bp|location=Sequence derived from alignment at LSalAtl2s1446:12307..13285- (Lepeophtheirus salmonis)
ATGAAGGATTCACTCTCCAATGAGCACGTTCGATTAGCTATTTCTCAATC
AATATCGCATACCCTGAATAATTATTTACATATAGAAACAAGGTACATAC
TCTCTCTAATGAAGTTATAATAATGTATATCTTTTCATTGAAGGAGTTTA
GTATACAAGTTCCAATTCTTGAGATCAGAAATCAAACATCCCAATTATAG
TAAGGATGTTGCTCTTCAAACGACATCCATTCCTCCTCATTCTGGTGTAT
GGACAGGTATGAAAGCTTTTAAGATTTAATTAAATCTTAATTAGTTACTC
CAAATTAATTCCACCTCGATTTCTTTTTGTTATTGACAGTAGTTTATGTA
TAAAGCATTAGTTTTTCTATTCTTTTAAGTCTTTCATTGTCTAAAGTAAA
GATATCAACCAAGTTAATTGTGGAAATAAAATAATTATAAATACCTATAT
ATATTTTGTAACCAACATGAAAATATTTATCATATCTTTTTATATTTTAC
TCAATCTGTACCGAAAGTTGATTCGAGAGTCACACACTGCTTTCCAAATG
GAAGGAGTTTGGAGTTCTTCTWTTTTAGAAAATGTAAACACTATCCGAGG
ACTATCCACGCGGGTTTTATCACGAGATATACAACGATTTCTCGCAAATG
ATACCCTTTACTTAACACAAAAGCTTCTTGAAGCAAATAAAGAATTAGGA
TCGATGGAGTTGGAGTCCTATTTGGATATATACAAGAAAAATAAGGAGGA
ATGCACTAATAGTAACTCGGAGAGCTTTGAGATCCCGGAACTCGGAAGAT
TAGAGGAAAGTCTGGCAAAAATGGGCTGCTTCGTAAATGATAAATTAAAG
CCGATTTTCAAAAATGTGGATAGGGTATATACCCTTTCCTTTGATGATGG
ATATGCGTTGGGTATGACTGCATGTACCACTGAATTTGAGGACCAAGTAA
AATTAATTCTGGAGAGGAAATTTAANTGA
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