EMLSAG00000002355, EMLSAG00000002355-685121 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002355
Unique NameEMLSAG00000002355-685121
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002355 vs. C. finmarchicus
Match: gi|592868308|gb|GAXK01089254.1| (TSA: Calanus finmarchicus comp2420596_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.109e+0
Identity = 14/34 (41.18%), Postives = 19/34 (55.88%), Query Frame = 0 
Query:    8 CIRGSRSCIVTSVLRDSFCGETFSMLLFLHGGVE 41
            C+RGS+SC  TSV   S    +  +LL   G V+
Sbjct:  173 CLRGSKSCSATSVRIQSGSNSSHPVLLTRSGRVQ 274
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BLAST of EMLSAG00000002355 vs. L. salmonis peptides
Match: EMLSAP00000002355 (pep:novel supercontig:LSalAtl2s:LSalAtl2s144:152983:153794:-1 gene:EMLSAG00000002355 transcript:EMLSAT00000002355 description:"maker-LSalAtl2s144-snap-gene-1.22")

HSP 1 Score: 176.792 bits (447), Expect = 1.511e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 
Query:    1 MLKKANLCIRGSRSCIVTSVLRDSFCGETFSMLLFLHGGVEAQLSLSLRLRLLPLLGKKFKMDGVNFLFLEVEFPGVLSDLFLLFKEEGVK 91
            MLKKANLCIRGSRSCIVTSVLRDSFCGETFSMLLFLHGGVEAQLSLSLRLRLLPLLGKKFKMDGVNFLFLEVEFPGVLSDLFLLFKEEGVK
Sbjct:    1 MLKKANLCIRGSRSCIVTSVLRDSFCGETFSMLLFLHGGVEAQLSLSLRLRLLPLLGKKFKMDGVNFLFLEVEFPGVLSDLFLLFKEEGVK 91
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002355 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002355 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592868308|gb|GAXK01089254.1|5.109e+041.18TSA: Calanus finmarchicus comp2420596_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002355 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000023551.511e-58100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s144:15298... [more]
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BLAST of EMLSAG00000002355 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002355 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002355 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002355 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s144supercontigLSalAtl2s144:152983..153794 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s144-snap-gene-1.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002355 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002355EMLSAT00000002355-698202Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s144:152983..153794-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002355-685121 ID=EMLSAG00000002355-685121|Name=EMLSAG00000002355|organism=Lepeophtheirus salmonis|type=gene|length=812bp|location=Sequence derived from alignment at LSalAtl2s144:152983..153794- (Lepeophtheirus salmonis)
ATGTTGAAGAAGGCCAGTAATTCATTTAACCCCCCCCCCCCCAAAAAAAA
AACTATATATATATCTTATTAAATTTCCCTATAGACAAATGGAATTATTT
ATTATTTCATAAATTGCTATTGTTATTAAAAATGAATATAAATATAATCA
AAAATGGCTTTAAAAAAATAAATACACACGATGATAAAAATATAATGCCT
TTAGAGTAAAAAACAACGTATCATTTTGTTGATCCTTTTGATTACAATTT
CTTAGCTGCTTTACTCTTCTTTTTATTGGTAAGGTAAGTTAGCCAATTAA
TAGGTCTGTCCCGCTTTTTAGAGGAAGATGTAGGAGTTTGACGATCTATT
ACAGAGTTGGGAAGATTTAACGTGGGCGAAAATGGCTTCATTGGAGATAT
ATGAAGTCTTTTCGGAGATTCTAGATCTTTGTTKGATAATATGAGCATTT
TGGTCGGAGAGCATGGATACCTGTCAAACTTAAAAGGTGATGAGGATGTA
CTGCTTTGTTCAGTGACTTCGTCAAATAACTTCTTAACATTCTTATTTCT
AGATTTGTGCATAAGAGGCTCACGTTCCTGTATAGTCACAAGTGTCTTAA
GGGATTCCTTTTGCGGAGAAACATTTTCAATGTTACTTTTTTTACACGGA
GGAGTCGAAGCACAGCTCTCATTATCGCTTAGGCTACGTTTACTACCACT
TTTAGGGAAAAAGTTCAAGATGGATGGAGTCAACTTCCTTTTTTTGGAAG
TAGAATTTCCCGGCGTTCTATCGGATCTATTTCTTTTGTTTAAAGAAGAA
GGAGTAAAATGA
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