EMLSAG00000002479, EMLSAG00000002479-685245 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002479
Unique NameEMLSAG00000002479-685245
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002479 vs. GO
Match: - (symbol:PRAF2 "PRA1 family protein 2" species:9606 "Homo sapiens" [GO:0010008 "endosome membrane" evidence=IEA] [GO:0015031 "protein transport" evidence=IEA] [GO:0015813 "L-glutamate transport" evidence=ISS] [GO:0016021 "integral component of membrane" evidence=IEA] Pfam:PF03208 InterPro:IPR004895 GO:GO:0016021 GO:GO:0015031 GO:GO:0010008 GO:GO:0015813 EMBL:CH471224 CTD:11230 eggNOG:NOG288107 HOGENOM:HOG000231363 HOVERGEN:HBG053661 OMA:RRFRRNH OrthoDB:EOG7VDXQH TreeFam:TF105479 EMBL:AJ005896 EMBL:CR457023 EMBL:AK315374 EMBL:BC021213 RefSeq:NP_009144.1 UniGene:Hs.29595 ProteinModelPortal:O60831 BioGrid:116396 IntAct:O60831 MINT:MINT-1339907 STRING:9606.ENSP00000365570 PaxDb:O60831 PeptideAtlas:O60831 PRIDE:O60831 Ensembl:ENST00000376390 GeneID:11230 KEGG:hsa:11230 UCSC:uc004dmi.3 GeneCards:GC0XM048928 HGNC:HGNC:28911 HPA:CAB011655 HPA:HPA002859 MIM:300840 neXtProt:NX_O60831 PharmGKB:PA134955002 InParanoid:O60831 PhylomeDB:O60831 ChiTaRS:PRAF2 GenomeRNAi:11230 NextBio:42738 PRO:PR:O60831 ArrayExpress:O60831 Bgee:O60831 CleanEx:HS_PRAF2 Genevestigator:O60831 Uniprot:O60831)

HSP 1 Score: 43.8986 bits (102), Expect = 1.768e-5
Identity = 23/67 (34.33%), Postives = 37/67 (55.22%), Query Frame = 0 
Query:   15 LEVLWCTLNLCV-------PFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREV 74
            L VLW     C        P   +++H S+R RN+KNK++N +E +G+ K+ PM   L+ +G  +E 
Sbjct:  111 LLVLWVAGGACTFLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGL-KRTPMGLLLEALGQEQEA 176
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BLAST of EMLSAG00000002479 vs. GO
Match: - (symbol:PRAF2 "PRA1 family protein 2" species:9913 "Bos taurus" [GO:0010008 "endosome membrane" evidence=IEA] [GO:0015031 "protein transport" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] Pfam:PF03208 InterPro:IPR004895 GO:GO:0016021 GO:GO:0015031 GO:GO:0010008 EMBL:BC112850 RefSeq:NP_001039474.1 UniGene:Bt.22508 STRING:9913.ENSBTAP00000003318 Ensembl:ENSBTAT00000003318 GeneID:508703 KEGG:bta:508703 CTD:11230 eggNOG:NOG288107 GeneTree:ENSGT00390000008631 HOGENOM:HOG000231363 HOVERGEN:HBG053661 InParanoid:Q2KHX3 OMA:RRFRRNH OrthoDB:EOG7VDXQH TreeFam:TF105479 NextBio:20868639 Uniprot:Q2KHX3)

HSP 1 Score: 43.5134 bits (101), Expect = 1.940e-5
Identity = 22/65 (33.85%), Postives = 38/65 (58.46%), Query Frame = 0 
Query:   17 VLWCT-------LNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREV 74
            VLW         L++  P   +++H S+R RN+KNK++N +E +G+ K+ PM   L+ +G  +E 
Sbjct:  113 VLWAAGGAGTFLLSIAGPVLLILVHASLRLRNLKNKIENKIESIGL-KRTPMGLLLEALGQEQEA 176
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BLAST of EMLSAG00000002479 vs. GO
Match: - (symbol:Praf2 "PRA1 domain family 2" species:10090 "Mus musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0005768 "endosome" evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008150 "biological_process" evidence=ND] [GO:0015031 "protein transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] MGI:MGI:1859607 Pfam:PF03208 InterPro:IPR004895 GO:GO:0016021 GO:GO:0015031 GO:GO:0010008 CTD:11230 eggNOG:NOG288107 GeneTree:ENSGT00390000008631 HOGENOM:HOG000231363 HOVERGEN:HBG053661 OMA:RRFRRNH OrthoDB:EOG7VDXQH TreeFam:TF105479 EMBL:AF229636 EMBL:AK003344 EMBL:BC064757 RefSeq:NP_613068.1 UniGene:Mm.28850 ProteinModelPortal:Q9JIG8 MINT:MINT-4998285 PaxDb:Q9JIG8 PRIDE:Q9JIG8 Ensembl:ENSMUST00000033489 GeneID:54637 KEGG:mmu:54637 UCSC:uc009sme.1 InParanoid:Q9JIG8 NextBio:311472 PRO:PR:Q9JIG8 Bgee:Q9JIG8 CleanEx:MM_PRAF2 Genevestigator:Q9JIG8 Uniprot:Q9JIG8)

HSP 1 Score: 43.5134 bits (101), Expect = 2.538e-5
Identity = 19/53 (35.85%), Postives = 35/53 (66.04%), Query Frame = 0 
Query:   22 LNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREV 74
            L++  P   +++H S+R RN+KNK++N +E +G+ K+ PM   L+ +G  +E 
Sbjct:  125 LSITAPVFLILLHASLRLRNLKNKIENKIESIGL-KRTPMGLLLEALGQEQEA 176
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BLAST of EMLSAG00000002479 vs. GO
Match: - (symbol:praf2 "PRA1 domain family, member 2" species:7955 "Danio rerio" [GO:0008150 "biological_process" evidence=ND] [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] Pfam:PF03208 InterPro:IPR004895 ZFIN:ZDB-GENE-050417-190 InterPro:IPR016196 SUPFAM:SSF103473 CTD:11230 HOVERGEN:HBG053661 EMBL:BC093309 EMBL:BC164952 RefSeq:NP_001017698.1 UniGene:Dr.40046 GeneID:550393 KEGG:dre:550393 InParanoid:Q561T5 NextBio:20879643 Uniprot:Q561T5)

HSP 1 Score: 41.2022 bits (95), Expect = 1.360e-4
Identity = 22/71 (30.99%), Postives = 40/71 (56.34%), Query Frame = 0 
Query:    4 FIQIGEGVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREV 74
            F+ +  GV  FL        +  P   +++H S+R R++KNK++N +E +G+ K+ PM   L+ +G  +E 
Sbjct:  113 FLSVLGGVAVFL------FGIAFPILMILVHASVRLRSLKNKLENKLESIGL-KRTPMGLVLEALGQEQEA 176
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BLAST of EMLSAG00000002479 vs. GO
Match: - (symbol:arl6ip5a "ADP-ribosylation factor-like 6 interacting protein 5a" species:7955 "Danio rerio" [GO:0008150 "biological_process" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0003674 "molecular_function" evidence=ND] Pfam:PF03208 InterPro:IPR004895 ZFIN:ZDB-GENE-031113-22 eggNOG:NOG272388 GeneTree:ENSGT00390000008631 HOVERGEN:HBG053661 OrthoDB:EOG7VDXQH TreeFam:TF105479 EMBL:CU468905 EMBL:BC083221 EMBL:BC164985 RefSeq:NP_001006096.1 UniGene:Dr.79189 STRING:7955.ENSDARP00000098330 Ensembl:ENSDART00000112474 GeneID:450076 KEGG:dre:450076 CTD:450076 InParanoid:Q5XJS6 OMA:SFRLRNM NextBio:20833054 Uniprot:Q5XJS6)

HSP 1 Score: 39.6614 bits (91), Expect = 7.082e-4
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 0 
Query:   31 VIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPRE 73
            +  H S+R RNIKNK++N ME  G+ KK+PM   L+ +G   E
Sbjct:  134 IFAHASLRLRNIKNKLENKMESAGL-KKSPMGIILEALGQQEE 175
[Close]
BLAST of EMLSAG00000002479 vs. GO
Match: - (symbol:Arl6ip5 "ADP-ribosylation factor-like 6 interacting protein 5" species:10090 "Mus musculus" [GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008631 "intrinsic apoptotic signaling pathway in response to oxidative stress" evidence=ISO] [GO:0010917 "negative regulation of mitochondrial membrane potential" evidence=ISO] [GO:0015813 "L-glutamate transport" evidence=IDA] [GO:0016020 "membrane" evidence=ISO] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0032874 "positive regulation of stress-activated MAPK cascade" evidence=ISO] [GO:0043065 "positive regulation of apoptotic process" evidence=ISO] [GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO] [GO:0051051 "negative regulation of transport" evidence=ISO] MGI:MGI:1929501 Pfam:PF03208 InterPro:IPR004895 GO:GO:0016021 GO:GO:0005856 GO:GO:0005789 GO:GO:0015813 eggNOG:NOG272388 GeneTree:ENSGT00390000008631 HOGENOM:HOG000231363 HOVERGEN:HBG053661 OrthoDB:EOG7VDXQH TreeFam:TF105479 CTD:10550 OMA:YPTAFVM ChiTaRS:ARL6IP5 GO:GO:0051051 EMBL:AF421860 EMBL:D87211 EMBL:AF265214 EMBL:AK005259 EMBL:AK008519 EMBL:AK088205 EMBL:AK076519 EMBL:BC003897 EMBL:AF133912 RefSeq:NP_075368.1 UniGene:Mm.291014 IntAct:Q8R5J9 MINT:MINT-219147 PhosphoSite:Q8R5J9 PaxDb:Q8R5J9 PRIDE:Q8R5J9 Ensembl:ENSMUST00000044681 GeneID:65106 KEGG:mmu:65106 UCSC:uc009dar.1 InParanoid:Q8R5J9 NextBio:320293 PRO:PR:Q8R5J9 Bgee:Q8R5J9 Genevestigator:Q8R5J9 Uniprot:Q8R5J9)

HSP 1 Score: 39.2762 bits (90), Expect = 8.661e-4
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 0 
Query:   14 FLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQI 68
            F  V+     + +P   + IH S+R RN+KNK++N ME +G+ KK PM   L  +
Sbjct:  116 FGGVMVFVFGITLPLLLMFIHASLRLRNLKNKLENKMEGIGL-KKTPMGIILDAL 169
[Close]
BLAST of EMLSAG00000002479 vs. GO
Match: - (symbol:ARL6IP5 "PRA1 family protein 3" species:9913 "Bos taurus" [GO:0005789 "endoplasmic reticulum membrane" evidence=IEA] [GO:0015813 "L-glutamate transport" evidence=ISS] [GO:0016021 "integral component of membrane" evidence=IEA] Pfam:PF03208 InterPro:IPR004895 GO:GO:0016021 GO:GO:0005789 GO:GO:0015813 eggNOG:NOG272388 GeneTree:ENSGT00390000008631 HOGENOM:HOG000231363 HOVERGEN:HBG053661 OrthoDB:EOG7VDXQH TreeFam:TF105479 EMBL:BT020899 EMBL:BC102757 RefSeq:NP_001014891.1 UniGene:Bt.13574 STRING:9913.ENSBTAP00000028661 PRIDE:Q5E9M1 Ensembl:ENSBTAT00000028661 GeneID:509977 KEGG:bta:509977 CTD:10550 InParanoid:Q5E9M1 OMA:YPTAFVM NextBio:20869227 Uniprot:Q5E9M1)

HSP 1 Score: 39.2762 bits (90), Expect = 9.473e-4
Identity = 22/62 (35.48%), Postives = 33/62 (53.23%), Query Frame = 0 
Query:   14 FLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVI 75
            F  V+     +  P   + IH S+R RN+KNK++N ME +G+ K+ PM   L  +    E I
Sbjct:  116 FGGVMVFVFGITFPLLLMFIHASLRLRNLKNKLENKMEEIGL-KRTPMGIVLDALEQQEETI 176
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BLAST of EMLSAG00000002479 vs. GO
Match: - (symbol:ARL6IP5 "PRA1 family protein 3" species:9031 "Gallus gallus" [GO:0005789 "endoplasmic reticulum membrane" evidence=IEA] [GO:0015813 "L-glutamate transport" evidence=ISS] [GO:0016021 "integral component of membrane" evidence=IEA] Pfam:PF03208 InterPro:IPR004895 GO:GO:0016021 GO:GO:0005789 GO:GO:0015813 eggNOG:NOG272388 GeneTree:ENSGT00390000008631 HOGENOM:HOG000231363 HOVERGEN:HBG053661 OrthoDB:EOG7VDXQH TreeFam:TF105479 CTD:10550 OMA:YPTAFVM EMBL:AJ851467 RefSeq:NP_001012623.1 UniGene:Gga.4817 STRING:9031.ENSGALP00000028073 PaxDb:Q5F433 PRIDE:Q5F433 Ensembl:ENSGALT00000028126 GeneID:426074 KEGG:gga:426074 InParanoid:Q5F433 NextBio:20827795 PRO:PR:Q5F433 Uniprot:Q5F433)

HSP 1 Score: 39.2762 bits (90), Expect = 9.858e-4
Identity = 21/56 (37.50%), Postives = 32/56 (57.14%), Query Frame = 0 
Query:   13 YFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQI 68
            Y  +V+     + +P   + IH S+R RNIKNK++N  E +G+ KK PM   L  +
Sbjct:  115 YLGDVMVFMFGITLPLLLMFIHASLRLRNIKNKLENKKEEIGL-KKTPMGIILDAL 169
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BLAST of EMLSAG00000002479 vs. C. finmarchicus
Match: gi|592799245|gb|GAXK01155323.1| (TSA: Calanus finmarchicus comp5977295_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.426e+0
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 0 
Query:    9 EGVLYFLEVLWCTLNLCVPFAA 30
              VL+F EV++ TLN+C+ FA 
Sbjct:  245 NKVLFFFEVIFKTLNICIQFAG 310
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BLAST of EMLSAG00000002479 vs. C. finmarchicus
Match: gi|592957991|gb|GAXK01000565.1| (TSA: Calanus finmarchicus comp4465459_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.184e+0
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 0 
Query:   18 LWCTLNLCVPFAAVIIH 34
            +W   NLC+PF  V++H
Sbjct:  926 VWLIFNLCLPFTEVLLH 976
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BLAST of EMLSAG00000002479 vs. C. finmarchicus
Match: gi|592861302|gb|GAXK01096260.1| (TSA: Calanus finmarchicus comp55266_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.774e+0
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:   22 LNLCVPFAAVIIHYSMXXXXXXXXXXXXMEVLGIKKKNPMSFTLKQIGFPREV 74
            L + +P   ++ H S+R RNIKNKV ++ E LG+ +K PM+  L + G   EV
Sbjct:  245 LGVMMPVVFIVAHASLRLRNIKNKVTSVAENLGVSRKTPMAVFLDEWGIEPEV 403
[Close]
BLAST of EMLSAG00000002479 vs. C. finmarchicus
Match: gi|592957990|gb|GAXK01000566.1| (TSA: Calanus finmarchicus comp4465459_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 9.913e+0
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 0 
Query:   18 LWCTLNLCVPFAAVIIH 34
            +W   NLC+PF  V++H
Sbjct:  926 VWLIFNLCLPFTEVLLH 976
[Close]
BLAST of EMLSAG00000002479 vs. L. salmonis peptides
Match: EMLSAP00000002479 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1481:61103:62772:-1 gene:EMLSAG00000002479 transcript:EMLSAT00000002479 description:"snap_masked-LSalAtl2s1481-processed-gene-0.3")

HSP 1 Score: 158.303 bits (399), Expect = 1.155e-51
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 
Query:    1 MPSFIQIGEGVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVIFT 77
            MPSFIQIGEGVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVIFT
Sbjct:    1 MPSFIQIGEGVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVIFT 77
[Close]
BLAST of EMLSAG00000002479 vs. L. salmonis peptides
Match: EMLSAP00000012312 (pep:novel supercontig:LSalAtl2s:LSalAtl2s899:315986:320094:1 gene:EMLSAG00000012312 transcript:EMLSAT00000012312 description:"maker-LSalAtl2s899-augustus-gene-3.13")

HSP 1 Score: 107.842 bits (268), Expect = 9.200e-29
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:   10 GVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVIFT 77
            GV+YF EVLW  L+L VPFAAVIIH SMRKRNIKNK +N+ EVLG+KKKNPMSF LKQIGF  E IF+
Sbjct:  620 GVIYFREVLWFALSLGVPFAAVIIHSSMRKRNIKNKAENLKEVLGVKKKNPMSFILKQIGFTHEFIFS 687
[Close]
BLAST of EMLSAG00000002479 vs. Select Arthropod Genomes
Match: EFX71349.1 (hypothetical protein DAPPUDRAFT_308871 [Daphnia pulex])

HSP 1 Score: 56.9954 bits (136), Expect = 6.400e-11
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0 
Query:    9 EGVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVI 75
            +G+L FL      L + +PF+A  IH S+R R+++NKV N ME +G+KK  PM   L  +GF   ++
Sbjct:  125 DGILVFL------LGILLPFSATFIHSSLRLRSLRNKVTNKMEQIGLKKSTPMGMLLDALGFEAGIV 185
[Close]
BLAST of EMLSAG00000002479 vs. Select Arthropod Genomes
Match: gb|EFA12241.1| (PRA1 family protein 3-like Protein [Tribolium castaneum])

HSP 1 Score: 48.521 bits (114), Expect = 1.079e-7
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 0 
Query:   11 VLYFLEVLWCTL-NLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPRE 73
            V Y L+ L   L  + +P +A  IH S+R RNIKNK+ N +E LG+ K+ PM   L+Q+G  +E
Sbjct:  116 VAYMLKSLLVFLFGILLPISATFIHSSLRLRNIKNKIVNRVENLGL-KRTPMGIFLEQLGLDQE 178
[Close]
BLAST of EMLSAG00000002479 vs. Select Arthropod Genomes
Match: EDO64085.1 (AGAP005121-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 46.595 bits (109), Expect = 5.739e-7
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 0 
Query:   11 VLY-FLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIG 69
            VLY F  +L     + +PF+   +H S+R RNIKNK+ N +E++G+ K++PM   L+ +G
Sbjct:  126 VLYLFDSLLIVAFAILLPFSLTFVHASLRLRNIKNKITNAVEIVGV-KQSPMGQFLEAMG 184
[Close]
BLAST of EMLSAG00000002479 vs. Select Arthropod Genomes
Match: EAA09432.4 (AGAP005121-PB [Anopheles gambiae str. PEST])

HSP 1 Score: 46.595 bits (109), Expect = 5.739e-7
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 0 
Query:   11 VLY-FLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIG 69
            VLY F  +L     + +PF+   +H S+R RNIKNK+ N +E++G+ K++PM   L+ +G
Sbjct:  126 VLYLFDSLLIVAFAILLPFSLTFVHASLRLRNIKNKITNAVEIVGV-KQSPMGQFLEAMG 184
[Close]
BLAST of EMLSAG00000002479 vs. nr
Match: gi|155966193|gb|ABU41051.1| (putative ADP-ribosylation-like factor 6 interacting protein [Lepeophtheirus salmonis] >gi|225712094|gb|ACO11893.1| PRA1 family protein 3 [Lepeophtheirus salmonis])

HSP 1 Score: 106.301 bits (264), Expect = 2.176e-27
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0 
Query:   10 GVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVIFT 77
            GV+YF EVLW  L+L VPFAAVIIH SMRKRNIKNK +N+ EVLG+KKKNPMSF LKQIGF  E IF+
Sbjct:  107 GVIYFREVLWFALSLGVPFAAVIIHSSMRKRNIKNKAENLKEVLGVKKKNPMSFILKQIGFTHEFIFS 174
[Close]
BLAST of EMLSAG00000002479 vs. nr
Match: gi|225719834|gb|ACO15763.1| (PRA1 family protein 3 [Caligus clemensi])

HSP 1 Score: 88.9669 bits (219), Expect = 1.057e-20
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0 
Query:   10 GVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVIFT 77
            G+ +F E+LW  L+L +P AAVI+H + R RN+KNK +N+ EVLG+KKKNPMS+ LKQIGF  E  FT
Sbjct:  105 GLTFFREMLWFLLSLSIPLAAVILHSATRMRNVKNKAENLKEVLGVKKKNPMSYILKQIGFTHEFNFT 172
[Close]
BLAST of EMLSAG00000002479 vs. nr
Match: gi|225708864|gb|ACO10278.1| (PRA1 family protein 3 [Caligus rogercresseyi])

HSP 1 Score: 77.7962 bits (190), Expect = 2.842e-16
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 0 
Query:   10 GVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPRE 73
            G+ +  + LW  L+L VP A VI+H +MR RN+KNK +N+ EVLG+KKKNPMS+ LK IGF  +
Sbjct:  105 GMTFLRQFLWFLLSLAVPLAIVILHAAMRMRNVKNKAENLKEVLGVKKKNPMSYILKLIGFTHQ 168
[Close]
BLAST of EMLSAG00000002479 vs. nr
Match: gi|225710438|gb|ACO11065.1| (PRA1 family protein 3 [Caligus rogercresseyi])

HSP 1 Score: 77.411 bits (189), Expect = 3.450e-16
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 0 
Query:   10 GVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPRE 73
            G+ +  + LW  L+L VP A VI+H +MR RN+KNK +N+ EVLG+KKKNPMS+ LK IGF  +
Sbjct:  105 GMTFLRQFLWFLLSLAVPLAIVILHAAMRMRNVKNKAENLKEVLGVKKKNPMSYILKLIGFTHQ 168
[Close]
BLAST of EMLSAG00000002479 vs. nr
Match: gi|1022763997|gb|KZS09529.1| (PRA1 family protein 3 [Daphnia magna])

HSP 1 Score: 58.5362 bits (140), Expect = 9.535e-9
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 0 
Query:    9 EGVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVI 75
            +G+L FL      L + +PF+A  +H S+R R+++NK+ N ME +G+KK  PM   L  +GF  E+I
Sbjct:  128 DGILVFL------LGILLPFSATFVHASLRLRSLRNKLTNKMEQIGLKKSTPMGMILDALGFEAEII 188
[Close]
BLAST of EMLSAG00000002479 vs. nr
Match: gi|321460306|gb|EFX71349.1| (hypothetical protein DAPPUDRAFT_308871 [Daphnia pulex])

HSP 1 Score: 56.9954 bits (136), Expect = 3.131e-8
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0 
Query:    9 EGVLYFLEVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVI 75
            +G+L FL      L + +PF+A  IH S+R R+++NKV N ME +G+KK  PM   L  +GF   ++
Sbjct:  125 DGILVFL------LGILLPFSATFIHSSLRLRSLRNKVTNKMEQIGLKKSTPMGMLLDALGFEAGIV 185
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BLAST of EMLSAG00000002479 vs. nr
Match: gi|998498307|ref|XP_015524975.1| (PREDICTED: PRA1 family protein 3 [Neodiprion lecontei])

HSP 1 Score: 55.0694 bits (131), Expect = 2.224e-7
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 0 
Query:    5 IQIGEGVLYFL--EVLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIGFPREVI 75
            I IG   L +    +L   + + +PF+   IH SMR RNI+NK+ N ME LG+ K+ PMS  L+Q+G+P + +
Sbjct:  116 ILIGSSFLAYTVGSLLVFLIGILLPFSVTFIHASMRLRNIRNKLVNKMEELGL-KRTPMSIFLEQLGYPMQTV 187
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BLAST of EMLSAG00000002479 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1658_size31987-snap-gene-0.7 (protein:Tk01684 transcript:maker-scaffold1658_size31987-snap-gene-0.7-mRNA-1 annotation:"low quality protein: serine threonine-protein phosphatase 4 catalytic subunit-like")

HSP 1 Score: 48.9062 bits (115), Expect = 9.550e-9
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:   17 VLWCTLNLCVPFAAVIIHYSMRKRNIKNKVKNIMEVLGIKKKNPMSFTLKQIG 69
            V W  L + +P A +I H ++R RN+KNK+ N  E LG+ K+ PM   L ++G
Sbjct:  491 VFW--LGIMLPVAFIIAHATLRLRNVKNKLVNASEALGLAKQTPMGHLLNELG 541
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002479 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 8
Match NameE-valueIdentityDescription
-1.768e-534.33symbol:PRAF2 "PRA1 family protein 2" species:9606 ... [more]
-1.940e-533.85symbol:PRAF2 "PRA1 family protein 2" species:9913 ... [more]
-2.538e-535.85symbol:Praf2 "PRA1 domain family 2" species:10090 ... [more]
-1.360e-430.99symbol:praf2 "PRA1 domain family, member 2" specie... [more]
-7.082e-446.51symbol:arl6ip5a "ADP-ribosylation factor-like 6 in... [more]
-8.661e-438.18symbol:Arl6ip5 "ADP-ribosylation factor-like 6 int... [more]
-9.473e-435.48symbol:ARL6IP5 "PRA1 family protein 3" species:991... [more]
-9.858e-437.50symbol:ARL6IP5 "PRA1 family protein 3" species:903... [more]
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BLAST of EMLSAG00000002479 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592799245|gb|GAXK01155323.1|5.426e+050.00TSA: Calanus finmarchicus comp5977295_c0_seq1 tran... [more]
gi|592957991|gb|GAXK01000565.1|7.184e+047.06TSA: Calanus finmarchicus comp4465459_c0_seq1 tran... [more]
gi|592861302|gb|GAXK01096260.1|7.774e+041.51TSA: Calanus finmarchicus comp55266_c1_seq1 transc... [more]
gi|592957990|gb|GAXK01000566.1|9.913e+047.06TSA: Calanus finmarchicus comp4465459_c0_seq2 tran... [more]
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BLAST of EMLSAG00000002479 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000024791.155e-51100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1481:6110... [more]
EMLSAP000000123129.200e-2975.00pep:novel supercontig:LSalAtl2s:LSalAtl2s899:31598... [more]
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BLAST of EMLSAG00000002479 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002479 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 4
Match NameE-valueIdentityDescription
EFX71349.16.400e-1140.30hypothetical protein DAPPUDRAFT_308871 [Daphnia pu... [more]
gb|EFA12241.1|1.079e-743.75PRA1 family protein 3-like Protein [Tribolium cast... [more]
EDO64085.15.739e-740.00AGAP005121-PA [Anopheles gambiae str. PEST][more]
EAA09432.45.739e-740.00AGAP005121-PB [Anopheles gambiae str. PEST][more]
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BLAST of EMLSAG00000002479 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 7
Match NameE-valueIdentityDescription
gi|155966193|gb|ABU41051.1|2.176e-2775.00putative ADP-ribosylation-like factor 6 interactin... [more]
gi|225719834|gb|ACO15763.1|1.057e-2058.82PRA1 family protein 3 [Caligus clemensi][more]
gi|225708864|gb|ACO10278.1|2.842e-1654.69PRA1 family protein 3 [Caligus rogercresseyi][more]
gi|225710438|gb|ACO11065.1|3.450e-1654.69PRA1 family protein 3 [Caligus rogercresseyi][more]
gi|1022763997|gb|KZS09529.1|9.535e-940.30PRA1 family protein 3 [Daphnia magna][more]
gi|321460306|gb|EFX71349.1|3.131e-840.30hypothetical protein DAPPUDRAFT_308871 [Daphnia pu... [more]
gi|998498307|ref|XP_015524975.1|2.224e-741.10PREDICTED: PRA1 family protein 3 [Neodiprion lecon... [more]
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BLAST of EMLSAG00000002479 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold1658_size31987-snap-gene-0.79.550e-941.51protein:Tk01684 transcript:maker-scaffold1658_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1481supercontigLSalAtl2s1481:61103..62772 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1481-processed-gene-0.3
Biotypeprotein_coding
EvidenceIEA
Noteputative ADP-ribosylation-like factor 6 interacting protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002479 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002479EMLSAT00000002479-698326Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1481:61103..62772-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002479-685245 ID=EMLSAG00000002479-685245|Name=EMLSAG00000002479|organism=Lepeophtheirus salmonis|type=gene|length=1670bp|location=Sequence derived from alignment at LSalAtl2s1481:61103..62772- (Lepeophtheirus salmonis)
ATGCCAAGTTTCATTCAAATCGGGGAGGGTAGGGTTATAAATTATGTTTT
TTGGGTTGATTTGAGAAGGTGTACCCCTGTGTAGTATTTTATGTAGGGCG
TAGGTGTAATATAAATATAGATAAAAAAGCGATTGCAGATCTCATCCATT
TTCATAATAGAATTTATTAGCATTATTTTCCATGACGTAGATACATAAAT
AAGTTTAAATAATTTATCACAAAAATAAACATTCATTAATCTTAATTTTT
TTGAGAGAGTATTTACATACATCCAGTTTTCCATAGACTTTCTAAAAAGG
GTAACAAATATGTATTATATTTTCATTTAATTAAGATTCTATGTGAAATC
AAGAAATTGATTTAAAAGGGGTGTATTTGGAAAAAATTGAAATACTTATG
GGGAATAAGTATTTATATTCTTGAGATTTATATTCCCTGTTCCCTTGATA
TATGCTTATAATTTACAATATTTGGGATGAGGAACATGAGGTAGCTGAAT
ATTCCATGGAGGAACAGTTTATTAATTGTATAACTTTTGCCTATTGTAAT
ACAAATTACAAGGATATAAGTATTATGTGGCAAATTATAAATTTCAAATC
CCCACAGTTATATTATTCATGAATATTTAAAAAAAATTTAATTTTAATAG
ATCGAAATGAAATAATATTTTCAATTGATAGCTAGTCACTAGAATTACCA
AAGTTGTAATTAAATAATAGATTTTATGACGAAGAAATTGCAACTTGTAT
AGTTAGCTCATACATATTGTAGCTTGTACAGACATTGCAACTTGTACATA
AGCTAAGTTTATTTATATGAATGTATTTATGAAAACAGTCCCAAAATACA
CTGTATATAGTCCTCCCTGGTATATATAATTATATTCTTTGTTTTTTTCG
GTGATGTGGTCATTTGGTAACATGGCATTCAGCAAAGTGACCATTGGCAA
TAAGATTTTTGGCAAAGTTTTCTAGAACCGTTTAATTCAACTCATATTAA
AAAGGAAAAAAAAACCAAGTACTGATTATAAAATTTTAAGGAAAGAATGT
GACTTTATGTGATGTTTAAAAATGAGCTAAAGTACTCCCTAGCTCATCTG
TAATACGTTTATTTTTCTTAGGCTTGTATAGTTTTTTATTTTTAAGGAGA
GAACATCTAAGTATTGAATGAGTAACTACGTACCATTGTGCCCATGAAAG
ACTGAGAGTAAATCATAGAGTTTCTGGGGAAGTTTTTTTTCCATAACATT
TACGCTACGTTTTTCTGTTTGTCGAAGCTTAATAAAACCTATTATCAAAC
CAAATACTTTTGTCTCCTGACCCTTGTATTTACCTCATTCTGTCTCTGAA
ATCCACATGACAACATTATCACCGTTGTTCTCATTGGTGTTATCGGTACC
CTTGCTTTCAAAGCGATACCCACAAATATTGTAATTGTTATGTCTGTTGT
ATTTGTCTTTAAAGGCGTCCTTTACTTCCTAGAAGTTCTTTGGTGCACAC
TCAATTTGTGTGTCCCCTTTGCAGCTGTCATCATACATTATTCTATGAGA
AAGAGGAACATCAAGAATAAAGTAAAAAATATCATGGAAGTCCTGGGAAT
TAAGAAAAAGAATCCAATGAGCTTCACTTTAAAACAAATTGGATTCCCTC
GTGAAGTTATCTTTACGTGA
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