EMLSAG00000002738, EMLSAG00000002738-685504 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002738
Unique NameEMLSAG00000002738-685504
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002738 vs. C. finmarchicus
Match: gi|592873766|gb|GAXK01083796.1| (TSA: Calanus finmarchicus comp177438_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.864e+0
Identity = 14/51 (27.45%), Postives = 23/51 (45.10%), Query Frame = 0 
Query:   24 FLCSAGECFFFPTTCNNMTM----KNKKASTSNSYEFFSPPPNSIHWQEDV 70
            F C +GEC     TCN +       +++ S   +     PPP  +H + D+
Sbjct: 1233 FHCHSGECIAIYDTCNGIPQCKDGSDEEPSVCPASSTQPPPPKHLHLRPDM 1385
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BLAST of EMLSAG00000002738 vs. C. finmarchicus
Match: gi|592828710|gb|GAXK01128614.1| (TSA: Calanus finmarchicus comp1991627_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.545e+0
Identity = 21/71 (29.58%), Postives = 32/71 (45.07%), Query Frame = 0 
Query:    8 EYYASSEEKEGILLL------LFLCSAGECFFFPTTCNNMTMKNKKASTSN--------SYE-FFSPPPNS 63
            +Y  SS+E+E  L L       F CS G C      C+N+     K+  +N        +Y+ F  PPP++
Sbjct: 1415 DYACSSKEQELELALSSCNVEQFTCSDGVCIDILARCDNINDCRDKSDEANCARVKMDPTYQKFIVPPPHN 1627
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BLAST of EMLSAG00000002738 vs. C. finmarchicus
Match: gi|592820422|gb|GAXK01134146.1| (TSA: Calanus finmarchicus comp462576_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.883e+0
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:   39 NNMTMKNKKASTSNSYEFFSPPPNSI 64
            N +T  +  A +SNS  F+SPPP S+
Sbjct:  661 NRITFIHSPAYSSNSQLFYSPPPFSV 738
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BLAST of EMLSAG00000002738 vs. C. finmarchicus
Match: gi|592927496|gb|GAXK01030970.1| (TSA: Calanus finmarchicus comp116012_c3_seq9 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.883e+0
Identity = 12/28 (42.86%), Postives = 16/28 (57.14%), Query Frame = 0 
Query:   16 KEGILLLLFLCSAGECFFFPTTCNNMTM 43
            KEG++  L LC   E FF  T C+N  +
Sbjct:  840 KEGVIFHLELCELIEIFFHITLCDNFYL 923
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BLAST of EMLSAG00000002738 vs. C. finmarchicus
Match: gi|592927503|gb|GAXK01030963.1| (TSA: Calanus finmarchicus comp116012_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 9.032e+0
Identity = 12/28 (42.86%), Postives = 16/28 (57.14%), Query Frame = 0 
Query:   16 KEGILLLLFLCSAGECFFFPTTCNNMTM 43
            KEG++  L LC   E FF  T C+N  +
Sbjct: 1003 KEGVIFHLELCELIEIFFHITLCDNFYL 1086
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BLAST of EMLSAG00000002738 vs. L. salmonis peptides
Match: EMLSAP00000002738 (pep:novel supercontig:LSalAtl2s:LSalAtl2s158:423138:423977:-1 gene:EMLSAG00000002738 transcript:EMLSAT00000002738 description:"snap_masked-LSalAtl2s158-processed-gene-4.2")

HSP 1 Score: 153.68 bits (387), Expect = 7.176e-50
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 
Query:    1 MYVLVVVEYYASSEEKEGILLLLFLCSAGECFFFPTTCNNMTMKNKKASTSNSYEFFSPPPNSIHWQEDVVENS 74
            MYVLVVVEYYASSEEKEGILLLLFLCSAGECFFFPTTCNNMTMKNKKASTSNSYEFFSPPPNSIHWQEDVVENS
Sbjct:    1 MYVLVVVEYYASSEEKEGILLLLFLCSAGECFFFPTTCNNMTMKNKKASTSNSYEFFSPPPNSIHWQEDVVENS 74
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002738 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002738 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592873766|gb|GAXK01083796.1|2.864e+027.45TSA: Calanus finmarchicus comp177438_c1_seq1 trans... [more]
gi|592828710|gb|GAXK01128614.1|5.545e+029.58TSA: Calanus finmarchicus comp1991627_c0_seq1 tran... [more]
gi|592820422|gb|GAXK01134146.1|5.883e+046.15TSA: Calanus finmarchicus comp462576_c0_seq1 trans... [more]
gi|592927496|gb|GAXK01030970.1|8.883e+042.86TSA: Calanus finmarchicus comp116012_c3_seq9 trans... [more]
gi|592927503|gb|GAXK01030963.1|9.032e+042.86TSA: Calanus finmarchicus comp116012_c3_seq2 trans... [more]
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BLAST of EMLSAG00000002738 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000027387.176e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s158:42313... [more]
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BLAST of EMLSAG00000002738 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002738 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002738 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002738 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s158supercontigLSalAtl2s158:423138..423977 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s158-processed-gene-4.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002738 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002738EMLSAT00000002738-698585Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s158:423138..423977-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002738-685504 ID=EMLSAG00000002738-685504|Name=EMLSAG00000002738|organism=Lepeophtheirus salmonis|type=gene|length=840bp|location=Sequence derived from alignment at LSalAtl2s158:423138..423977- (Lepeophtheirus salmonis)
ATGTATGTACTAGTTGTTGTGGAATATTATGCGAGTTAGAAGTTAGTCGA
ACTAAATATTATGTAGTTCTAAAAAATGATTAGTCTGCCTCTTGTTCTAA
AAAAGAAGAAGTTCATTTCGTACCGTTGAGTTTAAAACAGCAATAATGAT
AATATGTTAGTTCTTGTGCTTTTTTATAAGTATGGTTTTAATATTTTTTT
TGTAGGTAGTGAAGAAAAAGAAGGAATTCTTCTTCTTCTTTTCTTGTGTT
CTGCAGGTGAGTGCTTCTTTTTTCCAACAACGTGTAACAATATGACGATG
AAGAACAAGAAGGCTTCCACGTCAAACTCCTATGAATTTTTCTCCCCTCC
CCCCAACAGGTTATACTTTTTTCCCATTTTTCGAAATACCTGGGAGCCCT
TCCTCCACCACCTCCTCCTCTTCAGGTTGAATCTTATAGAGTATACTATG
GATTCTGTACTCCTTTCTAATTAATATTTTCTCCCAAACAGTACTTAATA
ATTATGACGTTTTTTTAGGGCGCGTAGGTCAAAAGGTCTTGGTAGAACCA
TCCTACTACCTATGAGTACTGAGTCTCTATAGAGGAAGAAATAATATATG
TAGTAAAACACTCTAGCCTTGAGAACTGTAGAGAAATAATAATAATAACA
AAAATAATAATAAAAAAAACCACCTCAAGCCAATTTATGTGTATTTTACC
TGGCTTGTCTGTTAAAAACCATAGCTGAAGTGAATGGTTTTCGGGCGTGC
ACACGCTGTTTTGTATTAAATATATATTATATTATTTTTCATCATGATTT
CAGTATCCATTGGCAAGAAGATGTTGTTGAGAATTCATAA
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