EMLSAG00000002791, EMLSAG00000002791-685557 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002791
Unique NameEMLSAG00000002791-685557
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002791 vs. C. finmarchicus
Match: gi|592818105|gb|GAXK01136463.1| (TSA: Calanus finmarchicus comp4512749_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 8.339e+0
Identity = 13/55 (23.64%), Postives = 29/55 (52.73%), Query Frame = 0 
Query:    9 SFFLIGVLRDVRWQVETSLETWMAHLPLLWVNLLSNMEAQVTYQLPSLVVFLVSI 63
            +FF+   L   +    TSL   + ++P  W N  +++   + + + +L++FL+ I
Sbjct:  790 AFFVYFKLMKSKENASTSLPMLITNMPTYWFNKNTSLACGIIFGVFTLIIFLLII 954
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BLAST of EMLSAG00000002791 vs. L. salmonis peptides
Match: EMLSAP00000002791 (pep:novel supercontig:LSalAtl2s:LSalAtl2s16129:30:790:1 gene:EMLSAG00000002791 transcript:EMLSAT00000002791 description:"maker-LSalAtl2s16129-snap-gene-0.3")

HSP 1 Score: 144.05 bits (362), Expect = 3.553e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MVQDTPLGSFFLIGVLRDVRWQVETSLETWMAHLPLLWVNLLSNMEAQVTYQLPSLVVFLVSILPPLYLILPT 73
            MVQDTPLGSFFLIGVLRDVRWQVETSLETWMAHLPLLWVNLLSNMEAQVTYQLPSLVVFLVSILPPLYLILPT
Sbjct:    1 MVQDTPLGSFFLIGVLRDVRWQVETSLETWMAHLPLLWVNLLSNMEAQVTYQLPSLVVFLVSILPPLYLILPT 73
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002791 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002791 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592818105|gb|GAXK01136463.1|8.339e+023.64TSA: Calanus finmarchicus comp4512749_c0_seq1 tran... [more]
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BLAST of EMLSAG00000002791 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000027913.553e-46100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s16129:30:... [more]
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BLAST of EMLSAG00000002791 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002791 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002791 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002791 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s16129supercontigLSalAtl2s16129:30..790 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s16129-snap-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002791 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002791EMLSAT00000002791-698638Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s16129:30..790+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002791-685557 ID=EMLSAG00000002791-685557|Name=EMLSAG00000002791|organism=Lepeophtheirus salmonis|type=gene|length=761bp|location=Sequence derived from alignment at LSalAtl2s16129:30..790+ (Lepeophtheirus salmonis)
TGTAATTTCAAATTTATAGTCCCCGGGGAGGAGCCGAACATTTGGTAATC
CTACACGGGCAGGAGCTGAAATGCCCTACACCCGGATGTGATGGATCCGG
GCATGTCACTGGCAACTACTCTTCTCATCGTAGTCTTTCTGGATGTCCTC
GTGCAAATAAACCAAAGAATCGACCCAAGGACGGAGTAGAGCCTGAGCCC
CTAAGGTGAGTTGGCCTCCTTGATTTTTTGTTTTTTTTGTTCTTCTATTT
TATCTAACAATCTAATAATTACATATATTGAGAATAAGTTTCACAACGTT
TTCTAAACAACCATGCCCCCGTTTTAATAGAGTTGTTGCACTTCAAAACA
GGTGTCCTATTCCGGGCTGCGATGGTTCAGGACACTCCACTGGGAAGTTT
CTTTCTCATCGGAGGTAGGAACACTTTTTCATTGGTTTTCATATGTCAAA
TAAATACTATTGGTGCTAATTATAACTTGAATGTCTTAGTGCTTCGGGAT
GTCCGTTGGCAAGTCGAAACAAGTCTCGAAACCTGGATGGCTCATCTMCC
TCTCCTCTGGGTCAACCTCCTCTCAAATATGGAGGCACAAGTAACTTATC
AACTACCTTCTCTGGTCGTCTTTCTAGTCTCAATCCTTCCTCCTCTGTAT
TTGATCCTTCCGACGTGATGGCTCATATTGAATCACCAGACGACATCCTC
ATGTCAGGCCTTGGAGTCAAAAGAAAAACGGAATACCAACTCTTCTTCCG
CTATGTATTTA
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