EMLSAG00000002904, EMLSAG00000002904-685670 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002904
Unique NameEMLSAG00000002904-685670
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002904 vs. C. finmarchicus
Match: gi|592912074|gb|GAXK01046301.1| (TSA: Calanus finmarchicus comp581353_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.957e+0
Identity = 14/36 (38.89%), Postives = 21/36 (58.33%), Query Frame = 0 
Query:   27 SFIESAKSYLIG-LDFNKVSMTNRCFPTKSTKHKHT 61
            SF++   S++   LDFN +S+T R     S  H+HT
Sbjct: 1940 SFLKPTTSFMTSTLDFNTLSVTVRAIVVSSQFHQHT 2047
[Close]
BLAST of EMLSAG00000002904 vs. C. finmarchicus
Match: gi|592928037|gb|GAXK01030450.1| (TSA: Calanus finmarchicus comp1889585_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.277e+0
Identity = 13/43 (30.23%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:   16 SEVNNIQRTSRSFIESAKSYLIGLDFNKVSMTNRCFPTKSTKH 58
            SE+     T++ F+    S++    +NK+    +CFPT  T H
Sbjct:  192 SELTFTNLTNKRFVSCMGSFM----YNKIRFVGKCFPTFRTSH 308
[Close]
BLAST of EMLSAG00000002904 vs. C. finmarchicus
Match: gi|592928038|gb|GAXK01030449.1| (TSA: Calanus finmarchicus comp1889585_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.724e+0
Identity = 13/43 (30.23%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:   16 SEVNNIQRTSRSFIESAKSYLIGLDFNKVSMTNRCFPTKSTKH 58
            SE+     T++ F+    S++    +NK+    +CFPT  T H
Sbjct:  192 SELTFTNLTNKRFVSCMGSFM----YNKIRFVGKCFPTFRTSH 308
[Close]
BLAST of EMLSAG00000002904 vs. C. finmarchicus
Match: gi|592928039|gb|GAXK01030448.1| (TSA: Calanus finmarchicus comp1889585_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.733e+0
Identity = 13/43 (30.23%), Postives = 22/43 (51.16%), Query Frame = 0 
Query:   16 SEVNNIQRTSRSFIESAKSYLIGLDFNKVSMTNRCFPTKSTKH 58
            SE+     T++ F+    S++    +NK+    +CFPT  T H
Sbjct:  192 SELTFTNLTNKRFVSCMGSFM----YNKIRFVGKCFPTFRTSH 308
[Close]
BLAST of EMLSAG00000002904 vs. L. salmonis peptides
Match: EMLSAP00000002904 (pep:novel supercontig:LSalAtl2s:LSalAtl2s167:123464:125640:-1 gene:EMLSAG00000002904 transcript:EMLSAT00000002904 description:"snap_masked-LSalAtl2s167-processed-gene-1.14")

HSP 1 Score: 134.806 bits (338), Expect = 8.097e-43
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    1 MSFIQYRYRHIYLFVSEVNNIQRTSRSFIESAKSYLIGLDFNKVSMTNRCFPTKSTKHKHTIEKI 65
            MSFIQYRYRHIYLFVSEVNNIQRTSRSFIESAKSYLIGLDFNKVSMTNRCFPTKSTKHKHTIEKI
Sbjct:    1 MSFIQYRYRHIYLFVSEVNNIQRTSRSFIESAKSYLIGLDFNKVSMTNRCFPTKSTKHKHTIEKI 65
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002904 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002904 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592912074|gb|GAXK01046301.1|4.957e+038.89TSA: Calanus finmarchicus comp581353_c0_seq1 trans... [more]
gi|592928037|gb|GAXK01030450.1|5.277e+030.23TSA: Calanus finmarchicus comp1889585_c0_seq3 tran... [more]
gi|592928038|gb|GAXK01030449.1|5.724e+030.23TSA: Calanus finmarchicus comp1889585_c0_seq2 tran... [more]
gi|592928039|gb|GAXK01030448.1|5.733e+030.23TSA: Calanus finmarchicus comp1889585_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000002904 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000029048.097e-43100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s167:12346... [more]
back to top
BLAST of EMLSAG00000002904 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002904 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002904 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002904 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s167supercontigLSalAtl2s167:123464..125640 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s167-processed-gene-1.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002904 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002904EMLSAT00000002904-698751Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s167:123464..125640-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002904-685670 ID=EMLSAG00000002904-685670|Name=EMLSAG00000002904|organism=Lepeophtheirus salmonis|type=gene|length=2177bp|location=Sequence derived from alignment at LSalAtl2s167:123464..125640- (Lepeophtheirus salmonis)
ATGAGCTTTATTCAATATAGATATAGACATATTTATTTATTTGTTTCTGA
AGTCAATAATATCCAAAGGTTTATTGTTACCCTATTGATTTTAATAAAAT
TAACTTAGTCTTTTTTTTCCCCCGTGTCAATTATTTTTCAATTCATTGGC
ACTCTCTGTAACATCTAATTATTAAATTGTCAAAGTTCTATTTATGTAAG
CAATTCTTTTTGCAACTATTTATGTTCTTTTTAGATGTTTTAGAGATTTA
ATCTATCTTGCATATGAACATTGAAATTGGAAACATGTGCCATGTTCCTA
GATGAAGGGAAATTACTATTCATGAAAATGAGCCAACTATCGTCATACTC
AATATATTTAGATTTTATTTTTTAAGGACCTCTCGGTCCTTTATAGTAAT
CAAACCTATAAATTACCATTTTTTGTTAACCGTTACAAAGAGTTAAGTCT
AGTTTAATTATAATTACATTATGTATATAATCATTTATTTAAGCATAAGT
CAAACACAAACAAACTTAGAGACAACAAATTGCTTTCCCCCTCTTCTTTT
CTTTCTTTCAAATTTAATGCAATAATTAATTATATACAATTTATTAAAAA
TTAATTTTCAGGAGTCGGCTAAATCGTATTTGATGTAAATTGTTTGTGAA
GTATTGACTTTATTCATTGATATTCAATGTTACAAATATTATAAAATATA
TAATCKCTCTTCATGTTKCCTCTCTATCCATTGGTATATTAATTAATTAT
AGCTGTAGATTATATTTTTGTTTTCATTTATGTAACTATATTTTAAGTTA
CCTACATCTTTTTTGTCTTATTATACATATAATTCCTAATTGTGTTTAAT
ATTTTGTAAAATATCTATTTAAATAAAATTTCTAGTCTTACAAATAAAGG
TATAATTATTTGAAAATTGTATTTCACTAATTTTATTTAGTAATATATTT
GTAATTTGGTTTTTTTAATTTGTATGNGAGATTAATCTATTCAATAGCTT
TTAAGCATTTTATGATTTAAAACCAAGTTTTCAATCCATCTTCTTAATTA
TATATATAATGTTTTTTTTTTTTTTTGTCAATTCGTTTGATGTTAAAGTA
ATCTTTTCCCATATTTTCTCGAGGGCCTAATGATTATTCATTATCTAATG
AGTAAATATGATTAAGTTACAATTATTTCGTAGAATCATGAAATCCTGTA
ATTAAAAGAGCCTTAATGGGTACGTGTGGCATATAGGGATCCGTCACATT
CCATGAGTAGATATGCTGGGTACTCTGAAATCTGAACACTTACTAATTCA
ATAATTATTTATAAAGGTTGCGTGATTCAAATTAATATATATTTTGATAT
ATTAAAGCAAAAAAAACCCTGAGTACTCTAGCTTACGTACAAGTCGAGAA
ATTGACAATTGAATATGATCGACGAATTTCTATTTGCGCTCTCCAAGTAG
TTGGCCGTCTCCAGGACCACTTTCTACGGCGTCAGCAAGTCCAAAACGTT
GGAGAGAAAGAAGGGCTCTGTCAAACAGGCCAAACTGGACTCGGAATAGT
TGAAGAAAACAACCCAAGCCAATCCCCTCAAGTCCATAAGTGGCCATGCA
AGAGATCTTAGGCTTTCACACCAGACTATCCAGAGAGCTATCAAAAAAGT
GAAGTTTAAAATTCAAAGTATTCCGATTTTAATGAACCACTCGATATTAT
ATTTGTGTGATTAAGAACTCAAAAGATGATTTTAGACGATTGGTAGTGTA
TTTTGGGCATAGGAAATTGGACCACAGGTAAAAATTAATCTGTTAATAAA
TGTAAAAAAAAATTAAACTGATTTTCAACATCGACGCTTCAATTGGTATT
AAAGTTTCCGATACACCTTACATTAAGTATGATACGCATATACCAGTAAT
GTGAACATGAACCGAGTCTCTATTTTGAAAACTTGACTTTAAGGGGGGGG
GGGAGATCAAAGGCTTGGGCTTGATTTAGATACCAAACTGACTTGGTACT
TAACTGGACTTGAATTTATTTTTTGACCAATTTTAATACAATAATAAGAG
TTATTTTATTTTTAAAATATATTTATTTTTATTCATCAGTGGCCTTGATT
TTAACAAAGTATCCATGACAAATCGTTGCTTCCCAACCAAATCCACTAAA
CATAAACATACAATAGAGAAAATTTGA
back to top
Add to Basket