EMLSAG00000002922, EMLSAG00000002922-685688 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002922
Unique NameEMLSAG00000002922-685688
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000002922 vs. C. finmarchicus
Match: gi|592869989|gb|GAXK01087573.1| (TSA: Calanus finmarchicus comp5872727_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.691e+0
Identity = 12/35 (34.29%), Postives = 23/35 (65.71%), Query Frame = 0 
Query:    4 FNNPKRYYSVSSVYMVRKRIAYTVLHVTLTNINCI 38
            F++ + ++SVSS  ++R R    ++ +TL+ I CI
Sbjct:  266 FSSMRIWFSVSSKLLLRFRFLVFLVFLTLSKIQCI 370
[Close]
BLAST of EMLSAG00000002922 vs. C. finmarchicus
Match: gi|592818120|gb|GAXK01136448.1| (TSA: Calanus finmarchicus comp6573435_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.213e+0
Identity = 17/62 (27.42%), Postives = 29/62 (46.77%), Query Frame = 0 
Query:    5 NNPKRYYSVSSVYMVRKRIAYTVLHVTLTNINCIFPFVMKYIDYGRRDSASLIYKVGFGISC 66
            N P  + S +S +     I + + +    +  C FPF+ K +   +R    LIY + F +SC
Sbjct:  131 NTPYSFDSYNSAFCPDPCIGFVMYNCL--DSGCKFPFLSKELRTVKRPCT*LIYLLSFPLSC 310
[Close]
BLAST of EMLSAG00000002922 vs. L. salmonis peptides
Match: EMLSAP00000002922 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1686:52939:53677:1 gene:EMLSAG00000002922 transcript:EMLSAT00000002922 description:"maker-LSalAtl2s1686-augustus-gene-0.1")

HSP 1 Score: 148.673 bits (374), Expect = 4.728e-48
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MKKFNNPKRYYSVSSVYMVRKRIAYTVLHVTLTNINCIFPFVMKYIDYGRRDSASLIYKVGFGISCSTYLVLP 73
            MKKFNNPKRYYSVSSVYMVRKRIAYTVLHVTLTNINCIFPFVMKYIDYGRRDSASLIYKVGFGISCSTYLVLP
Sbjct:    1 MKKFNNPKRYYSVSSVYMVRKRIAYTVLHVTLTNINCIFPFVMKYIDYGRRDSASLIYKVGFGISCSTYLVLP 73
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002922 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002922 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592869989|gb|GAXK01087573.1|2.691e+034.29TSA: Calanus finmarchicus comp5872727_c0_seq1 tran... [more]
gi|592818120|gb|GAXK01136448.1|3.213e+027.42TSA: Calanus finmarchicus comp6573435_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000002922 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000029224.728e-48100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1686:5293... [more]
back to top
BLAST of EMLSAG00000002922 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002922 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002922 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000002922 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1686supercontigLSalAtl2s1686:52939..53677 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1686-augustus-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002922 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002922EMLSAT00000002922-698769Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1686:52939..53677+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002922-685688 ID=EMLSAG00000002922-685688|Name=EMLSAG00000002922|organism=Lepeophtheirus salmonis|type=gene|length=739bp|location=Sequence derived from alignment at LSalAtl2s1686:52939..53677+ (Lepeophtheirus salmonis)
TTTTCATCTTATTAATGTTTCTTAATGCACACATTCCAAATCTGTGAGTA
TCTATTGACGTTTCAATACCTTTATGATAACAACTTTTTCCATTTCAGAA
ACATTTATTTTGTTGTTATGAAGAATAATCTTAATGTACTAAGGAGTTAT
GCTTTACTTATCTATATGGTCTTGAAAAAAATCTGACATTCTACAATTTT
CGAGGAGTTATGGACGTCAAACATCTCCAGATCTGTATAAATTTCATCAT
CACTATCTGAATAATAATAATTGTTGATTTTGTCGTTATGAAAAAATTCA
ATAATCCTAAACGGTATTATTCAGTTTCTTCCGTCTATATGGTGAGGAAA
AGAATCGCATATACAGTTCTCCATGTGACCCTTACAAATATGTGAGTATA
TTGACGTTTCTTTATCTTTAAGATAATAATTAGAAACTATTTTATTTAGA
AATTGCATTTTCCCCTTTGTAATGAAGTATATTGACTATGGACGAAGAGA
TTCAGCTTCACTTATCTACAAGGTTGGATTCGGAATCTCATGCTCTACTT
ATTTAGTGCTACCTTAGATGTCGATCATCTCTGGCCCTGTCCAAGTTNNN
NNNNNGCAATTGACGTCGTATTGGATTAGCTCAATCGACGAAGGGAATAA
GAACGTATTCATATGGTCCTAGATGGAATTACATAATTTACATTTTTAAT
GATTTCATAGACGTCTATTATCTACGGAACTGCCTAAAC
back to top
Add to Basket