EMLSAG00000003146, EMLSAG00000003146-685912 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592896036|gb|GAXK01062339.1| (TSA: Calanus finmarchicus comp3267972_c0_seq1 transcribed RNA sequence) HSP 1 Score: 46.9802 bits (110), Expect = 2.507e-6 Identity = 18/30 (60.00%), Postives = 24/30 (80.00%), Query Frame = 0 Query: 112 TSLALASRKRGLGDRYDPRNLFRAIYGYRK 141 T SR++GL DRYDPRNLFR++YGY++ Sbjct: 77 TPTTTVSRRKGLWDRYDPRNLFRSVYGYKR 166
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592945892|gb|GAXK01012661.1| (TSA: Calanus finmarchicus comp1068970_c0_seq1 transcribed RNA sequence) HSP 1 Score: 44.2838 bits (103), Expect = 2.847e-5 Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 0 Query: 119 RKRGLGDRYDPRNLFRAIYGYRK 141 R+RGL D YDPRNLFRA+YGYRK Sbjct: 424 RRRGLRDPYDPRNLFRAVYGYRK 492
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592949166|gb|GAXK01009387.1| (TSA: Calanus finmarchicus comp2359516_c0_seq1 transcribed RNA sequence) HSP 1 Score: 42.3578 bits (98), Expect = 1.361e-4 Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 0 Query: 117 ASRKRGLGDRYDPRNLFRAIYGYRK 141 A+ +RGL D YDPRNLFRAIYGY++ Sbjct: 709 AAPRRGLRDPYDPRNLFRAIYGYKR 783 HSP 2 Score: 31.5722 bits (70), Expect = 8.484e-1 Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 0 Query: 116 LASRKRGLGDRYDPRNLFRAIYG 138 L +KRGL D DPRNLF +Y Sbjct: 163 LEVKKRGLSDPDDPRNLFNYVYA 231
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592829854|gb|GAXK01127690.1| (TSA: Calanus finmarchicus comp170140_c2_seq2 transcribed RNA sequence) HSP 1 Score: 40.4318 bits (93), Expect = 6.278e-4 Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 0 Query: 62 GHRAEKRGF-GLSDPRSLFAXXXXXXXXXXXXRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYG 138 G + E+RG+ DPR+LFA +YG R+ N+P + Y L KRGL D YDPRNLF ++YG Sbjct: 371 GIQVERRGYRDADDPRNLFAAMYGGVYK----REDPNVPRLTPEQYQY-----LKTLVHKRGLRDPYDPRNLFHSVYG 577
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592759056|gb|GAXK01195357.1| (TSA: Calanus finmarchicus comp452243_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.199e-3 Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 0 Query: 120 KRGLGDRYDPRNLFRAIYGYR 140 +R L D YDPRNLFRAIYGY+ Sbjct: 482 RRALKDPYDPRNLFRAIYGYK 544 HSP 2 Score: 31.9574 bits (71), Expect = 6.631e-1 Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 0 Query: 120 KRGLGDRYDPRNLFRAIYG 138 KRGL D DPRNLF +YG Sbjct: 167 KRGLSDPNDPRNLFNFVYG 223
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592829858|gb|GAXK01127686.1| (TSA: Calanus finmarchicus comp170140_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.302e-3 Identity = 30/76 (39.47%), Postives = 40/76 (52.63%), Query Frame = 0 Query: 64 RAEKRGF-GLSDPRSLFAXXXXXXXXXXXXRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYG 138 + E+RG+ DPR+LFA +YG R+ N+P + Y L KRGL D YDPRNLF ++YG Sbjct: 111 QVERRGYRDADDPRNLFAAMYGGVYK----REDPNVPRLTPEQYQY-----LKTLVHKRGLRDPYDPRNLFHSVYG 311 HSP 2 Score: 28.4906 bits (62), Expect = 7.871e+0 Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 0 Query: 115 ALASRKRGLGDRYDPRNLFRAIYG 138 A+ +RG D DPRNLF A+YG Sbjct: 105 AVQVERRGYRDADDPRNLFAAMYG 176
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592829855|gb|GAXK01127689.1| (TSA: Calanus finmarchicus comp170140_c2_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.359e-3 Identity = 30/76 (39.47%), Postives = 40/76 (52.63%), Query Frame = 0 Query: 64 RAEKRGF-GLSDPRSLFAXXXXXXXXXXXXRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYG 138 + E+RG+ DPR+LFA +YG R+ N+P + Y L KRGL D YDPRNLF ++YG Sbjct: 371 QVERRGYRDADDPRNLFAAMYGGVYK----REDPNVPRLTPEQYQY-----LKTLVHKRGLRDPYDPRNLFHSVYG 571 HSP 2 Score: 28.4906 bits (62), Expect = 8.233e+0 Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 0 Query: 115 ALASRKRGLGDRYDPRNLFRAIYG 138 A+ +RG D DPRNLF A+YG Sbjct: 506 AVQVERRGYRDADDPRNLFAAMYG 577
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592759055|gb|GAXK01195358.1| (TSA: Calanus finmarchicus comp452243_c0_seq2 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.387e-3 Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 0 Query: 120 KRGLGDRYDPRNLFRAIYGYR 140 +R L D YDPRNLFRAIYGY+ Sbjct: 458 RRALKDPYDPRNLFRAIYGYK 520 HSP 2 Score: 31.5722 bits (70), Expect = 7.426e-1 Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 0 Query: 120 KRGLGDRYDPRNLFRAIYG 138 KRGL D DPRNLF +YG Sbjct: 167 KRGLSDPNDPRNLFNFVYG 223
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592844522|gb|GAXK01113022.1| (TSA: Calanus finmarchicus comp95587_c0_seq2 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 3.415e-3 Identity = 29/75 (38.67%), Postives = 36/75 (48.00%), Query Frame = 0 Query: 65 AEKRGF-GLSDPRSLFAXXXXXXXXXXXXRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYG 138 E+RG+ DPR+LFA +YG P Q + L +KRGL D YDPRNLF +IYG Sbjct: 60 VERRGYRDPDDPRNLFAAMYGGMYKRQDPDVNRLTPEQHQY---------LKTLVKKRGLRDPYDPRNLFHSIYG 257
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Match: gi|592844523|gb|GAXK01113021.1| (TSA: Calanus finmarchicus comp95587_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 5.168e-3 Identity = 29/75 (38.67%), Postives = 36/75 (48.00%), Query Frame = 0 Query: 65 AEKRGF-GLSDPRSLFAXXXXXXXXXXXXRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYG 138 E+RG+ DPR+LFA +YG P Q + L +KRGL D YDPRNLF +IYG Sbjct: 60 VERRGYRDPDDPRNLFAAMYGGMYKRQDPDVNRLTPEQHQY---------LKTLVKKRGLRDPYDPRNLFHSIYG 257
BLAST of EMLSAG00000003146 vs. L. salmonis peptides
Match: EMLSAP00000003146 (pep:novel supercontig:LSalAtl2s:LSalAtl2s175:573737:605810:-1 gene:EMLSAG00000003146 transcript:EMLSAT00000003146 description:"maker-LSalAtl2s175-augustus-gene-6.6") HSP 1 Score: 282.337 bits (721), Expect = 1.577e-98 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 Query: 1 MHSSTQIASLISLIFLLGVAFSLPAERXPXPSNAHYDMIQEEGQRDRGPNSNLEWLLASDIGHRAEKRGFGLSDPRSLFANIYGNYGNYVGYRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYGYRK 141 MHSSTQIASLISLIFLLGVAFSLPAERXPXPSNAHYDMIQEEGQRDRGPNSNLEWLLASDIGHRAEKRGFGLSDPRSLFANIYGNYGNYVGYRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYGYRK Sbjct: 1 MHSSTQIASLISLIFLLGVAFSLPAERXPXPSNAHYDMIQEEGQRDRGPNSNLEWLLASDIGHRAEKRGFGLSDPRSLFANIYGNYGNYVGYRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYGYRK 141
BLAST of EMLSAG00000003146 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold33_size549341-snap-gene-1.17 (protein:Tk11526 transcript:maker-scaffold33_size549341-snap-gene-1.17-mRNA-1 annotation:"proteasome subunit archaeal") HSP 1 Score: 44.2838 bits (103), Expect = 6.223e-7 Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 0 Query: 73 SDPRSLFANIYGNYGNYVGYRKRLNIPTQSEVSSYYYGPTSLALASRKRGLGDRYDPRNLFRAIYG 138 DPRSLF IYG Y KRL ++ ++ + +++RGL D DPRNLFRAIYG Sbjct: 55 DDPRSLFKAIYG-------YNKRLMNKRRALITD---------VVNKRRGLRDPLDPRNLFRAIYG 104 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003146 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003146 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000003146 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003146 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003146 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003146 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003146 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s175:573737..605810- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003146-685912 ID=EMLSAG00000003146-685912|Name=EMLSAG00000003146|organism=Lepeophtheirus salmonis|type=gene|length=32074bp|location=Sequence derived from alignment at LSalAtl2s175:573737..605810- (Lepeophtheirus salmonis)back to top Add to Basket
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