EMLSAG00000003155, EMLSAG00000003155-685921 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003155
Unique NameEMLSAG00000003155-685921
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003155 vs. C. finmarchicus
Match: gi|592783197|gb|GAXK01171371.1| (TSA: Calanus finmarchicus comp63927_c3_seq12 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.826e+0
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:  107 ITQEKINRDDVKGMLIFMSSFGQEIQKLSSLW 138
            ITQE  N   V+ ++IFM    QEI  +S +W
Sbjct:  344 ITQEVTNHSSVQSLIIFM----QEISNVSRIW 427
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BLAST of EMLSAG00000003155 vs. C. finmarchicus
Match: gi|592783199|gb|GAXK01171369.1| (TSA: Calanus finmarchicus comp63927_c3_seq10 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.897e+0
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:  107 ITQEKINRDDVKGMLIFMSSFGQEIQKLSSLW 138
            ITQE  N   V+ ++IFM    QEI  +S +W
Sbjct:  358 ITQEVTNHSSVQSLIIFM----QEISNVSRIW 441
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BLAST of EMLSAG00000003155 vs. C. finmarchicus
Match: gi|592783181|gb|GAXK01171387.1| (TSA: Calanus finmarchicus comp63927_c5_seq6 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.288e+0
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:  107 ITQEKINRDDVKGMLIFMSSFGQEIQKLSSLW 138
            ITQE  N   V+ ++IFM    QEI  +S +W
Sbjct:  798 ITQEVTNHSSVQSLIIFM----QEISNVSRIW 881
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BLAST of EMLSAG00000003155 vs. C. finmarchicus
Match: gi|592783179|gb|GAXK01171389.1| (TSA: Calanus finmarchicus comp63927_c5_seq8 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.343e+0
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:  107 ITQEKINRDDVKGMLIFMSSFGQEIQKLSSLW 138
            ITQE  N   V+ ++IFM    QEI  +S +W
Sbjct:  798 ITQEVTNHSSVQSLIIFM----QEISNVSRIW 881
[Close]
BLAST of EMLSAG00000003155 vs. C. finmarchicus
Match: gi|592783205|gb|GAXK01171363.1| (TSA: Calanus finmarchicus comp63927_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.427e+0
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:  107 ITQEKINRDDVKGMLIFMSSFGQEIQKLSSLW 138
            ITQE  N   V+ ++IFM    QEI  +S +W
Sbjct:  344 ITQEVTNHSSVQSLIIFM----QEISNVSRIW 427
[Close]
BLAST of EMLSAG00000003155 vs. C. finmarchicus
Match: gi|592783206|gb|GAXK01171362.1| (TSA: Calanus finmarchicus comp63927_c3_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.449e+0
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:  107 ITQEKINRDDVKGMLIFMSSFGQEIQKLSSLW 138
            ITQE  N   V+ ++IFM    QEI  +S +W
Sbjct:  358 ITQEVTNHSSVQSLIIFM----QEISNVSRIW 441
[Close]
BLAST of EMLSAG00000003155 vs. C. finmarchicus
Match: gi|592783182|gb|GAXK01171386.1| (TSA: Calanus finmarchicus comp63927_c5_seq5 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.576e+0
Identity = 14/32 (43.75%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:  107 ITQEKINRDDVKGMLIFMSSFGQEIQKLSSLW 138
            ITQE  N   V+ ++IFM    QEI  +S +W
Sbjct:  798 ITQEVTNHSSVQSLIIFM----QEISNVSRIW 881
[Close]
BLAST of EMLSAG00000003155 vs. L. salmonis peptides
Match: EMLSAP00000003155 (pep:novel supercontig:LSalAtl2s:LSalAtl2s175:829767:830491:1 gene:EMLSAG00000003155 transcript:EMLSAT00000003155 description:"maker-LSalAtl2s175-augustus-gene-8.7")

HSP 1 Score: 294.278 bits (752), Expect = 4.423e-103
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 
Query:    1 MEGKAKLFLQVFYKIVYKSSNNYLAGIREVMAKKMVEKQLQNASKNSTVPPRRVTLDISNKIQNIHCNLTSSKASIRRIIQRIWQINKARLPLPLPFEDVISVNDSITQEKINRDDVKGMLIFMSSFGQEIQKLSSLWMTDYM 143
            MEGKAKLFLQVFYKIVYKSSNNYLAGIREVMAKKMVEKQLQNASKNSTVPPRRVTLDISNKIQNIHCNLTSSKASIRRIIQRIWQINKARLPLPLPFEDVISVNDSITQEKINRDDVKGMLIFMSSFGQEIQKLSSLWMTDYM
Sbjct:    1 MEGKAKLFLQVFYKIVYKSSNNYLAGIREVMAKKMVEKQLQNASKNSTVPPRRVTLDISNKIQNIHCNLTSSKASIRRIIQRIWQINKARLPLPLPFEDVISVNDSITQEKINRDDVKGMLIFMSSFGQEIQKLSSLWMTDYM 143
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003155 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003155 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592783197|gb|GAXK01171371.1|6.826e+043.75TSA: Calanus finmarchicus comp63927_c3_seq12 trans... [more]
gi|592783199|gb|GAXK01171369.1|6.897e+043.75TSA: Calanus finmarchicus comp63927_c3_seq10 trans... [more]
gi|592783181|gb|GAXK01171387.1|8.288e+043.75TSA: Calanus finmarchicus comp63927_c5_seq6 transc... [more]
gi|592783179|gb|GAXK01171389.1|8.343e+043.75TSA: Calanus finmarchicus comp63927_c5_seq8 transc... [more]
gi|592783205|gb|GAXK01171363.1|8.427e+043.75TSA: Calanus finmarchicus comp63927_c3_seq4 transc... [more]
gi|592783206|gb|GAXK01171362.1|8.449e+043.75TSA: Calanus finmarchicus comp63927_c3_seq3 transc... [more]
gi|592783182|gb|GAXK01171386.1|8.576e+043.75TSA: Calanus finmarchicus comp63927_c5_seq5 transc... [more]
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BLAST of EMLSAG00000003155 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000031554.423e-103100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s175:82976... [more]
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BLAST of EMLSAG00000003155 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003155 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003155 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003155 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s175supercontigLSalAtl2s175:829767..830491 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s175-augustus-gene-8.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003155 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003155EMLSAT00000003155-699002Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s175:829767..830491+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003155-685921 ID=EMLSAG00000003155-685921|Name=EMLSAG00000003155|organism=Lepeophtheirus salmonis|type=gene|length=725bp|location=Sequence derived from alignment at LSalAtl2s175:829767..830491+ (Lepeophtheirus salmonis)
TTTTATAATAAAATATGGAGGTCATTGCTAGATATTTGAAAAAGGGAAAT
ACATGATATCTACGTGATGATGAAAACTATTTAATCTCTAAGATGGGTAC
CAGGAGTGGGATGATACGGTGGCTGKGTCGGAAGKACTGAGAAGATAAGT
GTTTAAGTGTGGCCAACACCATGGAAGGGAAGGCTAAACTCTTTTTACAA
GTCTTTTACAAGATTGTTTACAAGTCTTCCAATAATTATCTTGCTGGGAT
AAGAGAAGTAATGGCAAAGAAGATGGTCGAAAAACAATTACAGAATGCTT
CGAAAAACTCAACGGTCCCTCCTAGACGAGTTACGCTTGACATTTCAAAT
AAGATACAAAACATTCATTGCAACCTGACATCCAGTAAAGCCAGCATCAG
AAGAATTATTCAAAGGATATGGCAAATAAATAAAGCTCGTCTCCCATTGC
CTCTCCCATTTGAAGATGTTATTTCAGTTAATGACTCAATCACTCAAGGT
AACTTATTCTACAGCAAATATTTATTTATAAATTTTTCTATCATATATTT
TTTCTATTGCAGAAAAAATTAACAGGGATGATGTAAAAGGAATGCTTATT
TTTATGTCAAGTTTCGGACAAGAAATACAAAAATTGTCGAGTCTATGGAT
GACTGATTATATGTAAAATACAGAACTAATTAAAAAATAAATATGTGGTG
TGAAATCATTAGTACTAACTTTAAT
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