EMLSAG00000003228, EMLSAG00000003228-685994 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003228
Unique NameEMLSAG00000003228-685994
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003228 vs. C. finmarchicus
Match: gi|592816280|gb|GAXK01138288.1| (TSA: Calanus finmarchicus comp102077_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 5.011e-4
Identity = 49/197 (24.87%), Postives = 83/197 (42.13%), Query Frame = 0 
Query:   11 RKALSQFKSLNDVSFLVKQLFQNDLKVLKRMKMSLNERVGRRGIKDFLQHLEDKI---------LLMTEKTSDKWLHYCSFIDLIAFHCFKSNCTWNTFELTD----SKIGNMNMXDFIKIRSNIKAHLPQNNANSVQQLVSNVKDEKKVISYATFRIISLNVSKAMLKDPIKIQEQKVKAKPLYLVYFNGSPYXYS 194
            RK L    S  ++  +V ++FQ    ++K M+  L      R     ++ + DKI         L       +K  HY ++ DL+      +   W  + L D    ++  ++   +   +R+ +K  L +        LV+ V+ E +      FRI +   +K    D IK  E+  KAKP  +VY+ G PY YS
Sbjct:  698 RKLLMSAGSYTNLMVVVGRVFQRAPGLIKDMENQLEGMSLTRKKSSLVELVLDKIGELVGADPGLAHQLGLPNKVWHYLAYTDLVVARVKDNTRQWAVYLLRDYPHTAEEASLIDEEGWVLRTKLKTALKEIG------LVAGVQTEAEE-DRIWFRITTTRKTK----DRIKDMERVYKAKPTLVVYYPGEPYFYS 1255
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BLAST of EMLSAG00000003228 vs. C. finmarchicus
Match: gi|592817488|gb|GAXK01137080.1| (TSA: Calanus finmarchicus comp2501329_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.307e+0
Identity = 13/44 (29.55%), Postives = 29/44 (65.91%), Query Frame = 0 
Query:  205 EGILGGFQCTQVIDTELRSKDLYSLYIIEKDKNSEKRNYKIAQL 248
            E +L  F+ + +++T+   ++L+++ +IEK +  EKR Y + +L
Sbjct: 1172 EAVLWEFRASGILETDTEKEELHAIAMIEKGEEKEKRAYILERL 1303
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BLAST of EMLSAG00000003228 vs. C. finmarchicus
Match: gi|592955632|gb|GAXK01002924.1| (TSA: Calanus finmarchicus comp925772_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 3.711e+0
Identity = 18/59 (30.51%), Postives = 34/59 (57.63%), Query Frame = 0 
Query:  125 HLPQNNANS-VQQLVSNV-KDEKKVISYATFRIISLNVSKAMLKDPIKIQEQKVKAKPL 181
            HLP N  NS ++ +++ V K++   ISY+ FR++   V   +  +P+  +++  K K L
Sbjct:   42 HLPGNICNSEIEDMINTVDKNQDGKISYSEFRVMLGAVPLLIPDNPMPAKQEMAKEKEL 218
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BLAST of EMLSAG00000003228 vs. C. finmarchicus
Match: gi|592827912|gb|GAXK01128989.1| (TSA: Calanus finmarchicus comp6102082_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 5.821e+0
Identity = 14/27 (51.85%), Postives = 15/27 (55.56%), Query Frame = 0 
Query:   82 FIDLIAFHCFKSNCTWNTFELTDSKIG 108
            FI LIAFH    +  WNT     SKIG
Sbjct:   97 FISLIAFHFLPIHILWNTL*RNQSKIG 177
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BLAST of EMLSAG00000003228 vs. C. finmarchicus
Match: gi|592955630|gb|GAXK01002926.1| (TSA: Calanus finmarchicus comp925772_c0_seq13 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 6.326e+0
Identity = 18/59 (30.51%), Postives = 34/59 (57.63%), Query Frame = 0 
Query:  125 HLPQNNANS-VQQLVSNV-KDEKKVISYATFRIISLNVSKAMLKDPIKIQEQKVKAKPL 181
            HLP N  NS ++ +++ V K++   ISY+ FR++   V   +  +P+  +++  K K L
Sbjct:   42 HLPGNICNSEIEDMINTVDKNQDGKISYSEFRVMLGAVPLLIPDNPMPAKQEMAKEKEL 218
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BLAST of EMLSAG00000003228 vs. C. finmarchicus
Match: gi|592785338|gb|GAXK01169230.1| (TSA: Calanus finmarchicus comp502_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.578e+0
Identity = 25/83 (30.12%), Postives = 39/83 (46.99%), Query Frame = 0 
Query:  181 LYLVYFNGSPYXYSPSKTIKNIIQEGILGGFQCTQVIDTELRSKDLYSL----YIIEKDKNSEKRN--YKIAQLENIDTNVDI 257
            L + +FNG+ +  +P K  KN+             + +  L  +DL+      +I EK KNSE +N   KI +  NI  N+ I
Sbjct:  211 LKMSFFNGTLFYKNPLKDHKNV-----------KNMAEKNLTCQDLFLFWSE*FITEKQKNSE*KNKLAKIGEKSNIINNIKI 426
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BLAST of EMLSAG00000003228 vs. C. finmarchicus
Match: gi|592785341|gb|GAXK01169227.1| (TSA: Calanus finmarchicus comp502_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 9.231e+0
Identity = 25/83 (30.12%), Postives = 39/83 (46.99%), Query Frame = 0 
Query:  181 LYLVYFNGSPYXYSPSKTIKNIIQEGILGGFQCTQVIDTELRSKDLYSL----YIIEKDKNSEKRN--YKIAQLENIDTNVDI 257
            L + +FNG+ +  +P K  KN+             + +  L  +DL+      +I EK KNSE +N   KI +  NI  N+ I
Sbjct: 2744 LKMSFFNGTLFYKNPLKDHKNV-----------KNMAEKNLTCQDLFLFWSE*FITEKQKNSE*KNKLAKIGEKSNIINNIKI 2959
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BLAST of EMLSAG00000003228 vs. L. salmonis peptides
Match: EMLSAP00000003228 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1780:23753:24658:-1 gene:EMLSAG00000003228 transcript:EMLSAT00000003228 description:"maker-LSalAtl2s1780-augustus-gene-0.3")

HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0 
Query:    1 MDPYERRMYXRKALSQFKSLNDVSFLVKQLFQNDLKVLKRMKMSLNERVGRRGIKDFLQHLEDKILLMTEKTSDKWLHYCSFIDLIAFHCFKSNCTWNTFELTDSKIGNMNMXDFIKIRSNIKAHLPQNNANSVQQLVSNVKDEKKVISYATFRIISLNVSKAMLKDPIKIQEQKVKAKPLYLVYFNGSPYXYSPSKTIKNIIQEGILGGFQCTQVIDTELRSKDLYSLYIIEKDKNSEKRNYKIAQLENIDTNVDIDTQSP 262
            MDPYERRMYXRKALSQFKSLNDVSFLVKQLFQNDLKVLKRMKMSLNERVGRRGIKDFLQHLEDKILLMTEKTSDKWLHYCSFIDLIAFHCFKSNCTWNTFELTDSKIGNMNMXDFIKIRSNIKAHLPQNNANSVQQLVSNVKDEKKVISYATFRIISLNVSKAMLKDPIKIQEQKVKAKPLYLVYFNGSPYXYSPSKTIKNIIQEGILGGFQCTQVIDTELRSKDLYSLYIIEKDKNSEKRNYKIAQLENIDTNVDIDTQSP
Sbjct:    1 MDPYERRMYXRKALSQFKSLNDVSFLVKQLFQNDLKVLKRMKMSLNERVGRRGIKDFLQHLEDKILLMTEKTSDKWLHYCSFIDLIAFHCFKSNCTWNTFELTDSKIGNMNMXDFIKIRSNIKAHLPQNNANSVQQLVSNVKDEKKVISYATFRIISLNVSKAMLKDPIKIQEQKVKAKPLYLVYFNGSPYXYSPSKTIKNIIQEGILGGFQCTQVIDTELRSKDLYSLYIIEKDKNSEKRNYKIAQLENIDTNVDIDTQSP 262
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003228 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003228 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592816280|gb|GAXK01138288.1|5.011e-424.87TSA: Calanus finmarchicus comp102077_c0_seq1 trans... [more]
gi|592817488|gb|GAXK01137080.1|1.307e+029.55TSA: Calanus finmarchicus comp2501329_c0_seq1 tran... [more]
gi|592955632|gb|GAXK01002924.1|3.711e+030.51TSA: Calanus finmarchicus comp925772_c0_seq11 tran... [more]
gi|592827912|gb|GAXK01128989.1|5.821e+051.85TSA: Calanus finmarchicus comp6102082_c0_seq1 tran... [more]
gi|592955630|gb|GAXK01002926.1|6.326e+030.51TSA: Calanus finmarchicus comp925772_c0_seq13 tran... [more]
gi|592785338|gb|GAXK01169230.1|6.578e+030.12TSA: Calanus finmarchicus comp502_c1_seq5 transcri... [more]
gi|592785341|gb|GAXK01169227.1|9.231e+030.12TSA: Calanus finmarchicus comp502_c1_seq2 transcri... [more]
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BLAST of EMLSAG00000003228 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000032280.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1780:2375... [more]
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BLAST of EMLSAG00000003228 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003228 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003228 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003228 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1780supercontigLSalAtl2s1780:23753..24658 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1780-augustus-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003228 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003228EMLSAT00000003228-699075Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1780:23753..24658-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003228-685994 ID=EMLSAG00000003228-685994|Name=EMLSAG00000003228|organism=Lepeophtheirus salmonis|type=gene|length=906bp|location=Sequence derived from alignment at LSalAtl2s1780:23753..24658- (Lepeophtheirus salmonis)
ATGGACCCTTATGAGCGTCGAATGTATAYTCGGAAGGCACTATCTCAGTT
TAAATCTCTAAATGATGTGTCTTTTCTTGTGAAACAACTCTTTCAGAATG
ATTTAAAGGTCTTAAAGCGGATGAAGATGTCATTGAATGAGAGGGTCGGG
AGGCGAGGAATTAAGGATTTTCTTCAACATTTGGAGGATAAAATACTCTT
GATGACGGAGAAAACAAGTGATAAATGGCTACACTATTGTTCATTTATTG
ATTTAATTGCATTCCATTGCTTTAAATCCAATTGCACTTGGAATACTTTT
GAGCTCACTGACTCTAAGTAAGGCGGTTCAYTCAAATAATACGGYAGTTT
CCTTATATATCTATATATTTCAGAATTGGAAATATGAATATGGAKGATTT
TATTAAGATTCGAAGTAATATCAAGGCTCATTTACCTCAAAACAACGCCA
ATTCCGTTCAACAACTTGTTAGCAATGTTAAAGACGAAAAAAAGGTCATT
TCATATGCTACGTTTCGTATTATCAGCTTAAATGTTAGCAAAGCCATGCT
AAAGGACCCCATTAAAATTCAAGAACAAAAGGTTAAAGCAAAACCCTTGT
ATCTAGTTTACTTTAACGGAAGTCCCTACGYGTACTCACCTTCCAAAACC
ATAAAAAATATAATTCAAGAGGTAATCTTTTTTTTTTATGATCCTCAATC
AAAGGCATAAAATAAATATTTATATCATACTTTAGGGAATTCTGGGTGGA
TTTCAATGTACACAGGTTATTGATACGGAACTCAGGTCGAAGGATCTCTA
TAGCCTTTATATAATTGAGAAAGATAAAAATAGCGAGAAGAGAAATTATA
AAATTGCTCAATTAGAAAATATCGATACAAATGTAGACATTGATACTCAA
AGTCCT
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