EMLSAG00000003249, EMLSAG00000003249-686015 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003249
Unique NameEMLSAG00000003249-686015
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003249 vs. C. finmarchicus
Match: gi|592820273|gb|GAXK01134295.1| (TSA: Calanus finmarchicus comp93449_c4_seq3 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.712e-1
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   25 FVKKIVLEHQMCLLTFARQRMVKDVYFHL 53
            F+KKI + H   L+TF R  ++   YFHL
Sbjct:  357 FLKKIYVFHGFLLITFRRFSLISFTYFHL 443
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BLAST of EMLSAG00000003249 vs. C. finmarchicus
Match: gi|592820274|gb|GAXK01134294.1| (TSA: Calanus finmarchicus comp93449_c4_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 3.023e-1
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:   25 FVKKIVLEHQMCLLTFARQRMVKDVYFHL 53
            F+KKI + H   L+TF R  ++   YFHL
Sbjct:  357 FLKKIYVFHGFLLITFRRFSLISFTYFHL 443
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BLAST of EMLSAG00000003249 vs. C. finmarchicus
Match: gi|592863320|gb|GAXK01094242.1| (TSA: Calanus finmarchicus comp49467_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.550e+0
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 0 
Query:   36 CLLTFARQRMVKDVYFHLNTMAKP 59
            CL TF + ++  DVYFHL++   P
Sbjct: 2468 CLDTFFQAKLQLDVYFHLSSSLMP 2539
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BLAST of EMLSAG00000003249 vs. C. finmarchicus
Match: gi|592788353|gb|GAXK01166215.1| (TSA: Calanus finmarchicus comp43_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.220e+0
Identity = 15/54 (27.78%), Postives = 32/54 (59.26%), Query Frame = 0 
Query:   15 MIAKRLRILDFVKKIVLEHQMCLLTFARQRMVKDVYFHLNTMAKPTTIVQLQAT 68
            MI++++   +++K+ VL+    +L+   +  + DV+ HLN   + T ++ L AT
Sbjct:  569 MISRKILRPNYIKQFVLDEADEMLSRGFKDQIYDVFRHLN---QETQVILLSAT 721
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BLAST of EMLSAG00000003249 vs. C. finmarchicus
Match: gi|592788354|gb|GAXK01166214.1| (TSA: Calanus finmarchicus comp43_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.226e+0
Identity = 15/54 (27.78%), Postives = 32/54 (59.26%), Query Frame = 0 
Query:   15 MIAKRLRILDFVKKIVLEHQMCLLTFARQRMVKDVYFHLNTMAKPTTIVQLQAT 68
            MI++++   +++K+ VL+    +L+   +  + DV+ HLN   + T ++ L AT
Sbjct:  695 MISRKILRPNYIKQFVLDEADEMLSRGFKDQIYDVFRHLN---QETQVILLSAT 847
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BLAST of EMLSAG00000003249 vs. L. salmonis peptides
Match: EMLSAP00000003249 (pep:novel supercontig:LSalAtl2s:LSalAtl2s178:388656:391435:-1 gene:EMLSAG00000003249 transcript:EMLSAT00000003249 description:"maker-LSalAtl2s178-augustus-gene-4.4")

HSP 1 Score: 143.665 bits (361), Expect = 3.812e-46
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 
Query:    1 MPNLEVLIGAQQVYMIAKRLRILDFVKKIVLEHQMCLLTFARQRMVKDVYFHLNTMAKPTTIVQLQATTT 70
            MPNLEVLIGAQQVYMIAKRLRILDFVKKIVLEHQMCLLTFARQRMVKDVYFHLNTMAKPTTIVQLQATTT
Sbjct:    1 MPNLEVLIGAQQVYMIAKRLRILDFVKKIVLEHQMCLLTFARQRMVKDVYFHLNTMAKPTTIVQLQATTT 70
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003249 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003249 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592820273|gb|GAXK01134295.1|2.712e-144.83TSA: Calanus finmarchicus comp93449_c4_seq3 transc... [more]
gi|592820274|gb|GAXK01134294.1|3.023e-144.83TSA: Calanus finmarchicus comp93449_c4_seq2 transc... [more]
gi|592863320|gb|GAXK01094242.1|3.550e+045.83TSA: Calanus finmarchicus comp49467_c0_seq1 transc... [more]
gi|592788353|gb|GAXK01166215.1|4.220e+027.78TSA: Calanus finmarchicus comp43_c1_seq1 transcrib... [more]
gi|592788354|gb|GAXK01166214.1|4.226e+027.78TSA: Calanus finmarchicus comp43_c0_seq1 transcrib... [more]
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BLAST of EMLSAG00000003249 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000032493.812e-46100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s178:38865... [more]
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BLAST of EMLSAG00000003249 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003249 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003249 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003249 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s178supercontigLSalAtl2s178:388656..391435 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s178-augustus-gene-4.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003249 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003249EMLSAT00000003249-699096Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s178:388656..391435-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003249-686015 ID=EMLSAG00000003249-686015|Name=EMLSAG00000003249|organism=Lepeophtheirus salmonis|type=gene|length=2780bp|location=Sequence derived from alignment at LSalAtl2s178:388656..391435- (Lepeophtheirus salmonis)
AGCATGGATTCTCCAGCAGGTGGGGGCTGGAAATGTGATATATTGTACAT
TACGCATAACGTTTTCTACTTTTTTTCTTACAGACTGCATGACAACCGAA
GAAAAGAAGTGTATTTTTCCATTTCTTTATAAAGGAGAAAGCTATAATCA
ATGTACAAATGCCGAATTTGGAAGTGCTTATTGGTGCGCAACAAGTTTAT
ATGATAGCAAAGAGGTTAAGGATTTTGGACTTTGTCAAAAAAATTGTTCT
TGTGAGTAAGGGGGATAAATAAAATCTGGGTCAATTGGGGGTTCATTTAT
AAAAAATCAAAATCCTGTGAAAAGTGCATTTATATAAATTAATCAACATT
CTTTTCTTTTAATGGTCAGAAAAACCTAAATAGATTATTATTATTTTTTT
TTAACAAAAACCAAGATTTGAAAAAATTTCTTAGAACAATCGAAATTTAT
TTGGTACAAAACTCGCCCATTAAATTAGAAAAGAAAAGGGTCCTTGTTTA
TCTTTACCCTAGGCCCTGTTCAGAATAAAATTAGCCCTGATTGACATGAT
GAGTTGTATATTTTATATGTAATAAATTTCATTTTAATTTAGGGACTGTG
AATCCAAGTAGCAAAGGTAAGAAATGATTTTAAAGGGGAGTACCTTGTAA
AATAATACAAAAATAATTATAGCTTGTCAAACATCTACAGCAAAAATATG
CGTTTTTCCATTCAAATATAATAATAAAGAGTACCGACAATGTACATCTG
TGGATAACAATGGTGTTAAATGGTGTGCCACAAGTGTGCATGATAGCTTA
GATGCAAAAGGCTATGGAAATTGCTTGGATTGTACATGTAGTAGTGAGTT
TTCTCCTTCCTCGTCTCTGCATTGCTTGATCCAATAGTTATTCGCTTTTT
ACCATTTAGATTGTACTGTCTCAACAGGGAATGAAGAATGTCTCTTTCCC
TTTATCTATAAAGGCTACACTTATTACAGATGTACAGATGCCGACTTTGA
TGGCAAATACTGGTGTGCAACATCTCGCTACAATACAGGAGAGGTTAATA
ATTACGGCCTCTGTCAAAGTGATTGCGTTCGTAAGTTTTACCACCAAATT
TAAGGATACCTATGCATGTCTCTGCAAACATTAGGTGCAAAATCCAGAGA
GAGGGTACTATTAGCGTACATCCAGGCTATGTGTTTAGTTAGTAGCATCT
CTTGGAAGAACACACACCAACTTACAGGCAGATCTGTCTACTTTTTATTT
ATTTATTTTTTGCTTGGTATTCGTTTGAATCAAATAATCAGCTGAAAAAA
TTATGGTGACTGTCTTTTTTGGATTTATAAGGACTAATCCTCATTGACTA
TTTGGAAAAGGATAAAAAACTATTACAGAAGCAAAGAGTCCTTTTCTACC
ACGACAATTCACCAACTCAGCAGTTGTGGTCACGAAATTAATGGAAATAG
GGTTCCAACACGAGCACACACTCTCACTCTTCTGTCAGTCATCACCATAT
CATAGATTTTATCAATGATTTCTGGAGTAGTAATTTCAACAGGGGGTTAT
GCCAAATGGGCATTCCAAAAATATTGAAACCACTTATAAACTGTTTTAAT
CGAAGGTACTCAATATGTTTATCAAGCTTCTTTGTAGTCTCCTGAGGCGT
TTTGCCTTTCATAAAGTAATTTTTAATCAATCCACGAAATTCCTTTTCGT
TCATTTTTTGAAAATCCCTCCACTTCCTAGATTCAAACGAATACCAAAAA
GAAAGAATTGACCGGTCTGGCTGAAGGTGGGTGTGTGTTCTTCCAAGAGA
CGCTACTAACTAAGCTTAACGATGCGCGCCAGTAGTATCATCTCGTCCAT
ACTTTGCATGGACTTTCATTGCGACTCTCGTATATACTAACTTTAAGCAT
TGAAATATTTGTTGGAATATTTATAGATTTGAAAATTCTAAGCATTTACT
CGCGTATGAACTGTTTTGTTGTTGTTGGTTTTTTTTAAATTTTCAAAGCT
GATTTCATTATTATTTTATTCTTGAGGAGAGGGGATCTAAATATAAAGTG
ATCACTATTGCGGGAAAGATGAAGAGTAATTCTGAGGATTTGTTGCGGAG
TTATGAAAGGTAAGTCTTGTTTGATTCTGAATAAAATTAAGAATCGGCAT
CAGACTAACTCCTGCTATGGGGTGGGATTTGTGTTTATTTCCTACCTTAA
ATAGCTGCTTATGACTAATCTAATATAACGTCATGACAGGTTAGCTGCTC
TTGTCCCAAAACATTGTTCACACTTTAAGGATATAATTTTTTATAAAACG
ATTTGTACCGATTTTTTTTGGGAAGAAACTAGACCGAATTTTTCCTTTGA
ACCAATCTAGACAGCAATTTTCCGTTTATCTGATATAGACCAAATTTTGT
TAGCATGGCAATATTCTACTTATTTTTATACATACTGTTAGTGCAGAGAA
TTTTCAACTCCAAATATTCCTCTAGATAATATATAACATATATCTTTTTT
CTCTCTCAATATGTTATGGTATGTTTAGGAACACCAGATGTGTCTTCTGA
CGGTAAGAAAGCCTTGTAACAATATTTTAAAGTACTATAATTTTGACATT
TTTGCAGTTTGCCAGACAAAGAATGGTCAAAGATGTATATTTCCATTTAA
ATACAATGGCCAAACCTACCACAATTGTACAACTACAGGCAACAACAACG
TAAAATGGTGTGCCACTAGTCTTAGAGAGAGTATGGAATACTTAGGCTAT
GGAGATTGTTTGACTGCATCTTGCGGTTGA
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