EMLSAG00000003250, EMLSAG00000003250-686016 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592836960|gb|GAXK01120584.1| (TSA: Calanus finmarchicus comp162312_c0_seq2 transcribed RNA sequence) HSP 1 Score: 48.9062 bits (115), Expect = 3.075e-6 Identity = 52/185 (28.11%), Postives = 82/185 (44.32%), Query Frame = 0 Query: 36 KLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGSSVIIGSWNEILADWLIFNRT-LDNFGGQGTXXXXXXXXXXXXXXXXXXXDAAP--------SVDYPCGPGDFNKVIRHYGFHKGISSMIESPEQRITLSGRICELNIVLKTRLNCILSEDESFLEAAEVGFALDELIEAMEIRLE 211 KLD Q L+ ++ I LI+ A + I N +G ++I G + L+D+L RT LD + I+ YG G + A+P S C DF + + YG G++ Q I S +IC + K L C+L + EAA+V + +D+L+EA R++ Sbjct: 222 KLDKQFLYLLSTIAGLIDPALSSISNSCEQSSIQTQTYGWALIGGGSMDTLSDYLGNGRTPLD------VITMPDVIYSYGYNLGYGVGFASPFLLPTYLGSCSIDCSSTDFTGLAQRYGITNGLAG------QYIGES-KICNFGLDAKQALGCLLQQKGDNKEAAQVDYLIDDLVEAGVQRIK 737
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592836961|gb|GAXK01120583.1| (TSA: Calanus finmarchicus comp162312_c0_seq1 transcribed RNA sequence) HSP 1 Score: 48.9062 bits (115), Expect = 3.121e-6 Identity = 52/185 (28.11%), Postives = 82/185 (44.32%), Query Frame = 0 Query: 36 KLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGSSVIIGSWNEILADWLIFNRT-LDNFGGQGTXXXXXXXXXXXXXXXXXXXDAAP--------SVDYPCGPGDFNKVIRHYGFHKGISSMIESPEQRITLSGRICELNIVLKTRLNCILSEDESFLEAAEVGFALDELIEAMEIRLE 211 KLD Q L+ ++ I LI+ A + I N +G ++I G + L+D+L RT LD + I+ YG G + A+P S C DF + + YG G++ Q I S +IC + K L C+L + EAA+V + +D+L+EA R++ Sbjct: 240 KLDKQFLYLLSTIAGLIDPALSSISNSCEQSSIQTQTYGWALIGGGSMDTLSDYLGNGRTPLD------VITMPDVIYSYGYNLGYGVGFASPFLLPTYLGSCSIDCSSTDFTGLAQRYGITNGLAG------QYIGES-KICNFGLDAKQALGCLLQQKGDNKEAAQVDYLIDDLVEAGVQRIK 755
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592812448|gb|GAXK01142120.1| (TSA: Calanus finmarchicus comp100757_c3_seq2 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 4.098e-2 Identity = 22/67 (32.84%), Postives = 33/67 (49.25%), Query Frame = 0 Query: 9 ASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGS 75 A+ L F + N L+Q+ LS T L +L ++PRL ++AK +D+ S L FGS Sbjct: 320 AANWLYRTFQHSIPNGLLQQDGLSPLTFL*RCLL*CFYDLPRLCQRAKLNNFSDRSSSCTLCKTFGS 520
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592812457|gb|GAXK01142111.1| (TSA: Calanus finmarchicus comp100757_c2_seq1 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 4.201e-2 Identity = 22/67 (32.84%), Postives = 33/67 (49.25%), Query Frame = 0 Query: 9 ASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGS 75 A+ L F + N L+Q+ LS T L +L ++PRL ++AK +D+ S L FGS Sbjct: 201 AANWLYRTFQHSIPNGLLQQDGLSPLTFL*RCLL*CFYDLPRLCQRAKLNNFSDRSSSCTLCKTFGS 401
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592812449|gb|GAXK01142119.1| (TSA: Calanus finmarchicus comp100757_c3_seq1 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 4.243e-2 Identity = 22/67 (32.84%), Postives = 33/67 (49.25%), Query Frame = 0 Query: 9 ASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGS 75 A+ L F + N L+Q+ LS T L +L ++PRL ++AK +D+ S L FGS Sbjct: 320 AANWLYRTFQHSIPNGLLQQDGLSPLTFL*RCLL*CFYDLPRLCQRAKLNNFSDRSSSCTLCKTFGS 520
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592812442|gb|GAXK01142126.1| (TSA: Calanus finmarchicus comp100757_c3_seq8 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 7.268e-2 Identity = 22/67 (32.84%), Postives = 33/67 (49.25%), Query Frame = 0 Query: 9 ASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGS 75 A+ L F + N L+Q+ LS T L +L ++PRL ++AK +D+ S L FGS Sbjct: 75 AANWLNRTFQHSIPNGLLQQDGLSPLTFL*RCLL*CFYDLPRLCQRAKLNNFSDRSSSCTLCKTFGS 275
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592782888|gb|GAXK01171680.1| (TSA: Calanus finmarchicus comp62983_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 7.408e-2 Identity = 30/98 (30.61%), Postives = 44/98 (44.90%), Query Frame = 0 Query: 129 VDYPCGPGDFNKVIRHYGF----HKGISSMI-----------ESPEQRITLSGRICELNIVLKTRLNCILSEDESFLEAAEVGFALDELIEAMEIRLE 211 D CG DFN+V+ Y F H+ + I + PE R G E LK L+CI S+ S EA++V +D+ ++ + RLE Sbjct: 376 ADPGCGVEDFNRVVSEYSFITSLHQTYGNDISQGGYASGQADDRPELRAYYLG---EFGRKLKLELHCITSQAGSSSEASKVVTLIDKYVKMGQERLE 660
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592812446|gb|GAXK01142122.1| (TSA: Calanus finmarchicus comp100757_c3_seq4 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.029e-1 Identity = 22/67 (32.84%), Postives = 33/67 (49.25%), Query Frame = 0 Query: 9 ASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGS 75 A+ L F + N L+Q+ LS T L +L ++PRL ++AK +D+ S L FGS Sbjct: 75 AANWLNRTFQHSIPNGLLQQDGLSPLTFL*RCLL*CFYDLPRLCQRAKLNNFSDRSSSCTLCKTFGS 275
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592812447|gb|GAXK01142121.1| (TSA: Calanus finmarchicus comp100757_c3_seq3 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.093e-1 Identity = 22/67 (32.84%), Postives = 33/67 (49.25%), Query Frame = 0 Query: 9 ASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGS 75 A+ L F + N L+Q+ LS T L +L ++PRL ++AK +D+ S L FGS Sbjct: 75 AANWLNRTFQHSIPNGLLQQDGLSPLTFL*RCLL*CFYDLPRLCQRAKLNNFSDRSSSCTLCKTFGS 275
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Match: gi|592812456|gb|GAXK01142112.1| (TSA: Calanus finmarchicus comp100757_c2_seq2 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.159e-1 Identity = 22/67 (32.84%), Postives = 33/67 (49.25%), Query Frame = 0 Query: 9 ASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGS 75 A+ L F + N L+Q+ LS T L +L ++PRL ++AK +D+ S L FGS Sbjct: 90 AANWLNRTFQHSIPNGLLQQDGLSPLTFL*RCLL*CFYDLPRLCQRAKLNNFSDRSSSCTLCKTFGS 290
BLAST of EMLSAG00000003250 vs. L. salmonis peptides
Match: EMLSAP00000003250 (pep:novel supercontig:LSalAtl2s:LSalAtl2s178:466180:470836:-1 gene:EMLSAG00000003250 transcript:EMLSAT00000003250 description:"snap_masked-LSalAtl2s178-processed-gene-4.2") HSP 1 Score: 442.58 bits (1137), Expect = 3.073e-159 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0 Query: 1 MFALRLLIASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGSSVIIGSWNEILADWLIFNRTLDNFGGQGTLFDYGFIFFYGLGFGLPILDAAPSVDYPCGPGDFNKVIRHYGFHKGISSMIESPEQRITLSGRICELNIVLKTRLNCILSEDESFLEAAEVGFALDELIEAMEIRLEYGLKNIY 218 MFALRLLIASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGSSVIIGSWNEILADWLIFNRTLDNFGGQGTLFDYGFIFFYGLGFGLPILDAAPSVDYPCGPGDFNKVIRHYGFHKGISSMIESPEQRITLSGRICELNIVLKTRLNCILSEDESFLEAAEVGFALDELIEAMEIRLEYGLKNIY Sbjct: 1 MFALRLLIASQLLISNFGLEVSNSLMQKTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGSSVIIGSWNEILADWLIFNRTLDNFGGQGTLFDYGFIFFYGLGFGLPILDAAPSVDYPCGPGDFNKVIRHYGFHKGISSMIESPEQRITLSGRICELNIVLKTRLNCILSEDESFLEAAEVGFALDELIEAMEIRLEYGLKNIY 218
BLAST of EMLSAG00000003250 vs. L. salmonis peptides
Match: EMLSAP00000003251 (pep:novel supercontig:LSalAtl2s:LSalAtl2s178:595722:610138:1 gene:EMLSAG00000003251 transcript:EMLSAT00000003251 description:"maker-LSalAtl2s178-augustus-gene-6.4") HSP 1 Score: 114.775 bits (286), Expect = 3.305e-30 Identity = 69/203 (33.99%), Postives = 106/203 (52.22%), Query Frame = 0 Query: 24 SLMQ-KTELSVSTKLDHQILHHINNIPRLIEKAKTKILNDKGSEKFLLNKFGSSVIIGSWNEILADWLIFNRTLDNFGGQGTLFD-YGFIFFYGLGFGLPILDAAPSVDYPCGPGDFNKVIRHYGFHKGISSMIESPEQRITLSGRICELNIVLKTRLNCILSEDESFLEAAEV--------GFALDELIEAMEIRLEYGLKN 216 SL+Q K+ S S +LD+QI + I +P LI A+ KI + E+ +G +VI+ S+ EI+AD+LI +R + NFGG T++ F+ I P D PCGP DF ++I YG G+ + + ++LS R+CE I+ +LNC+LS + +EAAE G+ +E E R + GL + Sbjct: 31 SLIQSKSSYSASERLDNQISYLIQRLPGLISTARDKINGAQSGEELRFKVYGVTVILASFKEIVADFLISDRNIINFGGSDTIYTYGFLFFYGLGFGFGSIWAVGPYSDLPCGPSDFKQLINEYGLQNGVVPYLNGYDNPLSLSTRVCEFEILAYMKLNCVLSGENDHIEAAEALSQAMYGFGYVGPFYLELEEARXDCGLSD 233 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003250 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003250 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 17
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BLAST of EMLSAG00000003250 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000003250 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003250 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003250 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003250 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s178:466180..470836- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003250-686016 ID=EMLSAG00000003250-686016|Name=EMLSAG00000003250|organism=Lepeophtheirus salmonis|type=gene|length=4657bp|location=Sequence derived from alignment at LSalAtl2s178:466180..470836- (Lepeophtheirus salmonis)back to top Add to Basket
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