EMLSAG00000003267, EMLSAG00000003267-686033 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592868843|gb|GAXK01088719.1| (TSA: Calanus finmarchicus comp4923101_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.028e-1 Identity = 18/53 (33.96%), Postives = 26/53 (49.06%), Query Frame = 0 Query: 48 IKTTCSKSASRKDLILSCRREKGLICEDGKGKCNYNVKQSMGEICYHLSCENY 100 I TCS+ KDL+L R + C + C +NV+ +I Y L+C Y Sbjct: 31 ISITCSRDVKFKDLLLIHRFCIIITCFCDEFICIWNVELIFSQIIYSLNCVEY 189
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592929430|gb|GAXK01029115.1| (TSA: Calanus finmarchicus comp586606_c0_seq15 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 3.091e+0 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 66 RREKGLICEDGKGKCNYNVKQSMGEICYHLSCENY 100 R +K +IC+ GKGKCN+ + G+ + + E Y Sbjct: 1248 REQKNVICKKGKGKCNHIINSITGKHFQNKAIEKY 1352
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592929437|gb|GAXK01029108.1| (TSA: Calanus finmarchicus comp586606_c0_seq8 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 3.303e+0 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 66 RREKGLICEDGKGKCNYNVKQSMGEICYHLSCENY 100 R +K +IC+ GKGKCN+ + G+ + + E Y Sbjct: 3714 REQKNVICKKGKGKCNHIINSITGKHFQNKAIEKY 3818
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592929438|gb|GAXK01029107.1| (TSA: Calanus finmarchicus comp586606_c0_seq7 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 3.304e+0 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 66 RREKGLICEDGKGKCNYNVKQSMGEICYHLSCENY 100 R +K +IC+ GKGKCN+ + G+ + + E Y Sbjct: 3726 REQKNVICKKGKGKCNHIINSITGKHFQNKAIEKY 3830
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592929431|gb|GAXK01029114.1| (TSA: Calanus finmarchicus comp586606_c0_seq14 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.626e+0 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 66 RREKGLICEDGKGKCNYNVKQSMGEICYHLSCENY 100 R +K +IC+ GKGKCN+ + G+ + + E Y Sbjct: 1284 REQKNVICKKGKGKCNHIINSITGKHFQNKAIEKY 1388
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592838173|gb|GAXK01119371.1| (TSA: Calanus finmarchicus comp4862957_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 3.797e+0 Identity = 12/30 (40.00%), Postives = 19/30 (63.33%), Query Frame = 0 Query: 79 KCNYNVKQSMGEICYHLSCENYNGKDFGYE 108 +C NVK S +I +H +N+NG+ F Y+ Sbjct: 199 RCTVNVKTS-PKIKHHKKTQNFNGQRFAYD 285
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592929439|gb|GAXK01029106.1| (TSA: Calanus finmarchicus comp586606_c0_seq6 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.865e+0 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 66 RREKGLICEDGKGKCNYNVKQSMGEICYHLSCENY 100 R +K +IC+ GKGKCN+ + G+ + + E Y Sbjct: 3750 REQKNVICKKGKGKCNHIINSITGKHFQNKAIEKY 3854
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592929440|gb|GAXK01029105.1| (TSA: Calanus finmarchicus comp586606_c0_seq5 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.866e+0 Identity = 13/35 (37.14%), Postives = 21/35 (60.00%), Query Frame = 0 Query: 66 RREKGLICEDGKGKCNYNVKQSMGEICYHLSCENY 100 R +K +IC+ GKGKCN+ + G+ + + E Y Sbjct: 3762 REQKNVICKKGKGKCNHIINSITGKHFQNKAIEKY 3866
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592927385|gb|GAXK01031081.1| (TSA: Calanus finmarchicus comp559019_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 4.126e+0 Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 0 Query: 21 WSCVSVFGSSTFQASSINTIASL 43 W+ VS+ GSS F SS+N I +L Sbjct: 213 WTLVSLLGSSIFLESSVNIIVAL 281
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Match: gi|592929428|gb|GAXK01029117.1| (TSA: Calanus finmarchicus comp586606_c0_seq17 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 7.143e+0 Identity = 10/17 (58.82%), Postives = 14/17 (82.35%), Query Frame = 0 Query: 66 RREKGLICEDGKGKCNY 82 R +K +IC+ GKGKCN+ Sbjct: 1248 REQKNVICKKGKGKCNH 1298
BLAST of EMLSAG00000003267 vs. L. salmonis peptides
Match: EMLSAP00000003267 (pep:novel supercontig:LSalAtl2s:LSalAtl2s179:347314:360653:-1 gene:EMLSAG00000003267 transcript:EMLSAT00000003267 description:"maker-LSalAtl2s179-snap-gene-3.15") HSP 1 Score: 220.705 bits (561), Expect = 2.764e-75 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 Query: 1 MYKLCLHLTLTKLCFLIWIIWSCVSVFGSSTFQASSINTIASLAHEKIKTTCSKSASRKDLILSCRREKGLICEDGKGKCNYNVKQSMGEICYHLSCENYNGKDFGYE 108 MYKLCLHLTLTKLCFLIWIIWSCVSVFGSSTFQASSINTIASLAHEKIKTTCSKSASRKDLILSCRREKGLICEDGKGKCNYNVKQSMGEICYHLSCENYNGKDFGYE Sbjct: 1 MYKLCLHLTLTKLCFLIWIIWSCVSVFGSSTFQASSINTIASLAHEKIKTTCSKSASRKDLILSCRREKGLICEDGKGKCNYNVKQSMGEICYHLSCENYNGKDFGYE 108 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003267 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003267 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 16
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BLAST of EMLSAG00000003267 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003267 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003267 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003267 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003267 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s179:347314..360653- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003267-686033 ID=EMLSAG00000003267-686033|Name=EMLSAG00000003267|organism=Lepeophtheirus salmonis|type=gene|length=13340bp|location=Sequence derived from alignment at LSalAtl2s179:347314..360653- (Lepeophtheirus salmonis)back to top Add to Basket
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