EMLSAG00000003272, EMLSAG00000003272-686038 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592874154|gb|GAXK01083408.1| (TSA: Calanus finmarchicus comp873985_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 1.057e-4 Identity = 39/158 (24.68%), Postives = 69/158 (43.67%), Query Frame = 0
Query: 1 MNDDDDGEYECKGTNGFGSKTFVFSVRKKGQSSGVK---LLARKMSQGIVSIGETSELTCFLKDLGKNDVVRWLKRLKVNLPESSPFLRDVIRIPSPSSGQNERGVKKLSYKRLDPQSNPRYHLKNASYLENGHRIYTFSLQIEETIMADSGEYVCLV 155
++ + +G Y C+G NGFGS+ F F ++ +G+ + L+ ++ V G +L+C + + V+WLK++ D+ +I P + + YK + R+ L LE+ Y SL DSG Y+C+V
Sbjct: 504 VSTETEGSYRCRGVNGFGSQEFTFIIQLRGKPNNTAKEVLVPGILTNQTVLKGSPLKLSCRV-STEEMFPVKWLKKV------------DMGKISEPQPQLSFLQIGGEKYKVFKVSQSSRFLLSERFILEDAS--YQHSLSFISAEEDDSGLYMCVV 932
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592901530|gb|GAXK01056845.1| (TSA: Calanus finmarchicus comp766134_c0_seq2 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 1.508e-1 Identity = 24/67 (35.82%), Postives = 38/67 (56.72%), Query Frame = 0
Query: 103 VKKLSYKRLDPQSNPRYHLKNASYLENGHRIYTFSLQIEETIMADSGEYVCLV-VEPLVDKKFKFNI 168
+K L+ L S+PR + +Y +N + T SL+I ++I +DSGEY C V EP + + K N+
Sbjct: 326 IKVLTVGGLVFSSDPRMTV-TMTYDDNDLQ-STCSLRISQSIRSDSGEYKCQVNTEPTISRSLKLNV 520
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592798018|gb|GAXK01156550.1| (TSA: Calanus finmarchicus comp1241877_c0_seq2 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.674e-1 Identity = 30/106 (28.30%), Postives = 43/106 (40.57%), Query Frame = 0
Query: 50 GETSELTCFLKDLGKNDVVRWLKRLKVNLPESSPFLRDVIRIPSPSSGQNERGVKKLSYKRLDPQSNPRYHLKNASYLENGHRIYTFSLQIEETIMADSGEYVCLV 155
G T+ L C L +LG V W++ SS + V L + S+PR + +++ G T+SLQI E + DSGEY C V
Sbjct: 609 GSTAVLECRLANLGIQHTVSWMR----------------------SSDMSVLTVGGLVFS-----SDPRIGVVSST--RPGQAAGTWSLQIAEAALRDSGEYQCQV 839
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592901531|gb|GAXK01056844.1| (TSA: Calanus finmarchicus comp766134_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.690e-1 Identity = 24/67 (35.82%), Postives = 38/67 (56.72%), Query Frame = 0
Query: 103 VKKLSYKRLDPQSNPRYHLKNASYLENGHRIYTFSLQIEETIMADSGEYVCLV-VEPLVDKKFKFNI 168
+K L+ L S+PR + +Y +N + T SL+I ++I +DSGEY C V EP + + K N+
Sbjct: 371 IKVLTVGGLVFSSDPRMTV-TMTYDDNDLQ-STCSLRISQSIRSDSGEYKCQVNTEPTISRSLKLNV 565
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592798019|gb|GAXK01156549.1| (TSA: Calanus finmarchicus comp1241877_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.759e-1 Identity = 31/106 (29.25%), Postives = 41/106 (38.68%), Query Frame = 0
Query: 50 GETSELTCFLKDLGKNDVVRWLKRLKVNLPESSPFLRDVIRIPSPSSGQNERGVKKLSYKRLDPQSNPRYHLKNASYLENGHRIYTFSLQIEETIMADSGEYVCLV 155
G T+ L C L +LG V W++ SS + V L + S+PR + S G T+SLQI E + DSGEY C V
Sbjct: 634 GSTAVLECRLANLGIQHTVSWMR----------------------SSDMSVLTVGGLVFS-----SDPRIGV--VSSTRPGQAAGTWSLQIAEAALRDSGEYQCQV 864
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592791490|gb|GAXK01163078.1| (TSA: Calanus finmarchicus comp5231280_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 5.594e-1 Identity = 15/45 (33.33%), Postives = 24/45 (53.33%), Query Frame = 0
Query: 5 DDGEYECKGTNGFGSKTFVFSVRKKGQSSGVKLLARKMSQGIVSI 49
D G+YEC NGFG +F + + SS V ++ ++ I+ I
Sbjct: 241 DFGDYECGINNGFGEDSFTVKLHRIDDSSLVLMVLVSLTVAILVI 375
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592847492|gb|GAXK01110052.1| (TSA: Calanus finmarchicus comp7430233_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 3.586e+0 Identity = 23/77 (29.87%), Postives = 33/77 (42.86%), Query Frame = 0
Query: 1 MNDDDDGEYECKGTNGFGSKTFVFSVR------KKGQSSGVK-LLARKMSQGIVSIGETSELTCFLKDLGKNDVVRW 70
+ D G YEC+G G +V G S VK ++ S +V +GET++L C L+ G V W
Sbjct: 112 VTSSDAGSYECRGVAGREEVMVATTVEVVGHLSHHGCSQEVKPTISGWFSNIMVEVGETAKLLCDLEPDGSQKRVDW 342
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592958354|gb|GAXK01000202.1| (TSA: Calanus finmarchicus comp3227463_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 4.615e+0 Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 0
Query: 173 VQDGSVPKSVASTLTMNRITIWAIFIPLA 201
+QDG +P VAS LT+ WA +PLA
Sbjct: 491 LQDGPIPMGVASGLTVYASAEWASLLPLA 577
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592937023|gb|GAXK01021530.1| (TSA: Calanus finmarchicus comp435604_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 5.327e+0 Identity = 30/111 (27.03%), Postives = 49/111 (44.14%), Query Frame = 0
Query: 56 TCFLKD-LGKNDVVRWLKRLKVNLPESSPF---LRDVIRIPSPSSGQNERGVKKLSYKRLDPQSNPRYHLK---NASYLENGHRIYTFS------LQIEETIMADSGEYVC 153
+C K+ +GK++ + LK K + ++ F L+D+ + S E R+ P ++P ++ N L N RI T S L I T D+GEY+C
Sbjct: 250 SCIAKNKVGKDEAIFQLKYSKTSNKDAPKFTTQLKDITNLKDFMSAHFEC--------RVTPTNDPNLKVEWKFNGQPLPNSSRIKTVSDFGFVMLDIAGTDSKDTGEYIC 558
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Match: gi|592932428|gb|GAXK01026125.1| (TSA: Calanus finmarchicus comp18940_c0_seq5 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 5.764e+0 Identity = 42/198 (21.21%), Postives = 74/198 (37.37%), Query Frame = 0
Query: 5 DDGEYECKGTNGFGSKTFVFSVRKKGQSSGVK--LLARKMSQGIVSIGETSELTCFLKDLGKNDVVRWLKRLKVNLPESSPFLRDVIRIPSPSSGQNERGVKKLSYKRLDPQSNPRYHLK---NASYLENGHRIYTFS------LQIEETIMADSGEYVCLVVEPLVDKKFKFNIGQLSVQDGSVPKSVASTLTMNRI 191
D G Y CK N G + V+ KG+ + V L + G SI E R KR ++ E R + + SP G R++P + ++ + ++ G RI+T + L I+ T D+G Y C+ + + N+ S +D + + ++M+R+
Sbjct: 1354 DSGNYTCKAINRHGESSVSCQVQVKGRQNIVTDPQLPKSFQTGTDSIHNLEE--------------RMWKREDISYEEMES--RAPVFVTSPHDVTCYEGQSAHFDCRIEPIGDGSMRVEWYHDDKPIQIGSRIHTINDFGFVVLDIDWTFRRDAGVYKCIAMNKCGKAEITVNLTCKSKKDIIIDSQLPQGMSMDRL 1899
BLAST of EMLSAG00000003272 vs. L. salmonis peptides
Match: EMLSAP00000003272 (pep:novel supercontig:LSalAtl2s:LSalAtl2s179:84798:104571:-1 gene:EMLSAG00000003272 transcript:EMLSAT00000003272 description:"maker-LSalAtl2s179-augustus-gene-1.4") HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query: 1 MNDDDDGEYECKGTNGFGSKTFVFSVRKKGQSSGVKLLARKMSQGIVSIGETSELTCFLKDLGKNDVVRWLKRLKVNLPESSPFLRDVIRIPSPSSGQNERGVKKLSYKRLDPQSNPRYHLKNASYLENGHRIYTFSLQIEETIMADSGEYVCLVVEPLVDKKFKFNIGQLSVQDGSVPKSVASTLTMNRITIWAIFIPLAFILIVIPLICVILYLHPNDDSSKKGIGSESKPGVPPRQGISSTSSSNQLEXDTQYQQHPFTDHYYQPL 269
MNDDDDGEYECKGTNGFGSKTFVFSVRKKGQSSGVKLLARKMSQGIVSIGETSELTCFLKDLGKNDVVRWLKRLKVNLPESSPFLRDVIRIPSPSSGQNERGVKKLSYKRLDPQSNPRYHLKNASYLENGHRIYTFSLQIEETIMADSGEYVCLVVEPLVDKKFKFNIGQLSVQDGSVPKSVASTLTMNRITIWAIFIPLAFILIVIPLICVILYLHPNDDSSKKGIGSESKPGVPPRQGISSTSSSNQLEXDTQYQQHPFTDHYYQPL
Sbjct: 1 MNDDDDGEYECKGTNGFGSKTFVFSVRKKGQSSGVKLLARKMSQGIVSIGETSELTCFLKDLGKNDVVRWLKRLKVNLPESSPFLRDVIRIPSPSSGQNERGVKKLSYKRLDPQSNPRYHLKNASYLENGHRIYTFSLQIEETIMADSGEYVCLVVEPLVDKKFKFNIGQLSVQDGSVPKSVASTLTMNRITIWAIFIPLAFILIVIPLICVILYLHPNDDSSKKGIGSESKPGVPPRQGISSTSSSNQLEXDTQYQQHPFTDHYYQPL 269 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003272 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003272 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000003272 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003272 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003272 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003272 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003272 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s179:84798..104571- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003272-686038 ID=EMLSAG00000003272-686038|Name=EMLSAG00000003272|organism=Lepeophtheirus salmonis|type=gene|length=19774bp|location=Sequence derived from alignment at LSalAtl2s179:84798..104571- (Lepeophtheirus salmonis)back to top Add to Basket
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