EMLSAG00000003273, EMLSAG00000003273-686039 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003273
Unique NameEMLSAG00000003273-686039
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003273 vs. C. finmarchicus
Match: gi|592899033|gb|GAXK01059342.1| (TSA: Calanus finmarchicus comp5587154_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.038e-1
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 0 
Query:   18 LPALSTLSKWISKFKCGPEIQYKLLDILN 46
            LPAL +LS  +SKF+  P  Q  LL+ LN
Sbjct:  204 LPALGSLSAQLSKFQAVPSSQIHLLNNLN 290
[Close]
BLAST of EMLSAG00000003273 vs. C. finmarchicus
Match: gi|592873019|gb|GAXK01084543.1| (TSA: Calanus finmarchicus comp792974_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.353e-1
Identity = 15/51 (29.41%), Postives = 23/51 (45.10%), Query Frame = 0 
Query:    1 MTGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDE 51
            +   +  K+HQ+ FP   P +S +  W+S    GP     +L  L K  D 
Sbjct:  583 IINARMAKHHQQSFPILAPVISFVLHWLSACTLGPPWLLCILAGLGKHPDS 735
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BLAST of EMLSAG00000003273 vs. L. salmonis peptides
Match: EMLSAP00000003273 (pep:novel supercontig:LSalAtl2s:LSalAtl2s179:1149631:1150002:-1 gene:EMLSAG00000003273 transcript:EMLSAT00000003273 description:"augustus-LSalAtl2s179-processed-gene-10.12")

HSP 1 Score: 206.838 bits (525), Expect = 4.734e-70
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 
Query:    1 MTGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
            MTGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL
Sbjct:    1 MTGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
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BLAST of EMLSAG00000003273 vs. SwissProt
Match: gi|88926256|sp|Q7M3K2.2|PELET_DROME (RecName: Full=Transposable element P transposase; Short=P-element transposase; AltName: Full=THAP domain-containing protein; Short=DmTHAP)

HSP 1 Score: 52.7582 bits (125), Expect = 2.549e-8
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 0 
Query:    2 TGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
             G +A+ +  KK  FPLP+ +TL +W+S      +I+   LD++   MD     DA   +L VL+FDEM++  +++Y  S D V++P+      I RGL
Sbjct:  171 AGPRAYNHLYKK-GFPLPSRTTLYRWLSDV----DIKRGCLDVVIDLMDSDGVDDA--DKLCVLAFDEMKVAAAFEYDSSADIVYEPSDYVQLAIVRGL 262
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BLAST of EMLSAG00000003273 vs. Select Arthropod Genomes
Match: gb|KFM70956.1| (Transposable element P transposase, partial [Stegodyphus mimosarum])

HSP 1 Score: 63.929 bits (154), Expect = 1.775e-12
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 0 
Query:    3 GGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
              K++ + ++K   PLP+ STL +W +KF C P IQ  +L ++ ++ + L  ++    ++ VLSFDEM +     Y    DQ+  P +K    + RGL
Sbjct:  212 SSKSYDFWKEKMGIPLPSTSTLKRWCAKFSCSPGIQSDVLAVMKERCEYLNSVE----KICVLSFDEMHIDSKLCYDSKLDQILGPFQKVQFVLIRGL 305
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BLAST of EMLSAG00000003273 vs. Select Arthropod Genomes
Match: gb|KFM75205.1| (Transposable element P transposase, partial [Stegodyphus mimosarum])

HSP 1 Score: 57.7658 bits (138), Expect = 2.202e-10
Identity = 29/97 (29.90%), Postives = 54/97 (55.67%), Query Frame = 0 
Query:    5 KAFKYHQKKFPFPLPALSTLSKWIS-KFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
            + + Y ++K  FPLP++STL +W+S  F+C P + + +L ++     ++   +    R+ VLSFDEM +     Y  + D++  P++     + RGL
Sbjct:  283 RCYSYLRQKMGFPLPSISTLKRWVSCSFRCSPGLLHDVLQVMRAGALKMTIQE----RMCVLSFDEMNVDSRICYDQAEDKIVGPHRNVQVIMVRGL 375
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BLAST of EMLSAG00000003273 vs. nr
Match: gi|675378054|gb|KFM70956.1| (Transposable element P transposase, partial [Stegodyphus mimosarum])

HSP 1 Score: 63.929 bits (154), Expect = 8.686e-10
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 0 
Query:    3 GGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
              K++ + ++K   PLP+ STL +W +KF C P IQ  +L ++ ++ + L  ++    ++ VLSFDEM +     Y    DQ+  P +K    + RGL
Sbjct:  212 SSKSYDFWKEKMGIPLPSTSTLKRWCAKFSCSPGIQSDVLAVMKERCEYLNSVE----KICVLSFDEMHIDSKLCYDSKLDQILGPFQKVQFVLIRGL 305
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BLAST of EMLSAG00000003273 vs. nr
Match: gi|1058159258|gb|JAS83277.1| (hypothetical protein g.59023, partial [Homalodisca liturata])

HSP 1 Score: 55.8398 bits (133), Expect = 5.271e-8
Identity = 29/89 (32.58%), Postives = 50/89 (56.18%), Query Frame = 0 
Query:    3 GGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKK 91
            G K + Y ++K  FPLP+LSTL++WI        ++    D + + M+   +      ++ VL +DEM++K +Y+Y    DQV  P+K+
Sbjct:   17 GKKTYIYLRRKCNFPLPSLSTLNRWI----ININMRKGFFDEIFRLMEVAGETKETHEKVAVLMYDEMKVKETYEYDQKNDQVIGPHKQ 101
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BLAST of EMLSAG00000003273 vs. nr
Match: gi|12830683|gb|AAK08182.1| (putative transposase, partial [Drosophila affinis])

HSP 1 Score: 58.151 bits (139), Expect = 6.903e-8
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0 
Query:    2 TGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
            T G     H  K  FPLP  +TL KW+S      EIQ   LD++   MD +  MD    +L VL+FDEM++  +++Y  S D V++P++     + RGL
Sbjct:  171 TAGPRAYNHLYKKGFPLPCRATLYKWLSNV----EIQTGCLDVVIDLMDNM-DMDT-ADKLCVLAFDEMKVAGTFEYDSSADVVYEPSEYVQLAMVRGL 263
[Close]
BLAST of EMLSAG00000003273 vs. nr
Match: gi|13346916|gb|AAK08184.2| (putative transposase, partial [Lordiphosa fenestrarum])

HSP 1 Score: 58.151 bits (139), Expect = 7.096e-8
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0 
Query:    2 TGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
            T G     H  K  FPLP  +TL KW+S      EIQ   LD++   MD +  MD    +L VL+FDEM++  +++Y  S D V++P++     + RGL
Sbjct:  171 TAGPRAYNHLYKKGFPLPCRATLYKWLSNV----EIQTGCLDVVIDLMDNM-DMDT-ADKLCVLAFDEMKVAGTFEYDSSADVVYEPSEYVQLAMVRGL 263
[Close]
BLAST of EMLSAG00000003273 vs. nr
Match: gi|13346917|gb|AAK08185.2| (putative transposase, partial [Lordiphosa magnipectinata])

HSP 1 Score: 58.151 bits (139), Expect = 7.439e-8
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0 
Query:    2 TGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
            T G     H  K  FPLP  +TL KW+S      EIQ   LD++   MD +  MD    +L VL+FDEM++  +++Y  S D V++P++     + RGL
Sbjct:  171 TAGPRAYNHLYKKGFPLPCRATLYKWLSNV----EIQTGCLDVVIDLMDNM-DMDT-ADKLCVLAFDEMKVAGTFEYDSSADVVYEPSEYVQLAMVRGL 263
[Close]
BLAST of EMLSAG00000003273 vs. nr
Match: gi|675382308|gb|KFM75205.1| (Transposable element P transposase, partial [Stegodyphus mimosarum])

HSP 1 Score: 57.7658 bits (138), Expect = 1.078e-7
Identity = 29/97 (29.90%), Postives = 54/97 (55.67%), Query Frame = 0 
Query:    5 KAFKYHQKKFPFPLPALSTLSKWIS-KFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
            + + Y ++K  FPLP++STL +W+S  F+C P + + +L ++     ++   +    R+ VLSFDEM +     Y  + D++  P++     + RGL
Sbjct:  283 RCYSYLRQKMGFPLPSISTLKRWVSCSFRCSPGLLHDVLQVMRAGALKMTIQE----RMCVLSFDEMNVDSRICYDQAEDKIVGPHRNVQVIMVRGL 375
[Close]
BLAST of EMLSAG00000003273 vs. nr
Match: gi|633843|gb|AAB31526.1| (O-type P element protein {exons 0-3} [Drosophila bifasciata, Peptide Transposon Partial, 757 aa])

HSP 1 Score: 57.7658 bits (138), Expect = 1.126e-7
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 0 
Query:    2 TGGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
             G +A+ +  KK  FPLP  +TL KW+S      EIQ   LD++   MD +  MD    +L VL+FDEM++  +++Y  S D V++P++     + RGL
Sbjct:  172 AGPRAYNHLYKK-GFPLPCRATLYKWLSNV----EIQTGCLDVVIDLMDNM-DMDT-ADKLCVLAFDEMKVAGTFEYDSSADLVYEPSEYVQLAMVRGL 263
[Close]
BLAST of EMLSAG00000003273 vs. nr
Match: gi|13346918|gb|AAK08186.2| (putative transposase, partial [Lordiphosa miki])

HSP 1 Score: 57.3806 bits (137), Expect = 1.665e-7
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 0 
Query:    3 GGKAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
            G +A+ +  KK  FPLP  +TL KW+S      EIQ   LD++   MD +  MD    +L VL+FDEM++  +++Y  S D V++P++     + RGL
Sbjct:  173 GPRAYNHLYKK-GFPLPCRATLYKWLSNV----EIQTGCLDVVIDLMDNM-DMDT-ADKLCVLAFDEMKVAGTFEYDSSADVVYEPSEYVQLAMVRGL 263
[Close]
BLAST of EMLSAG00000003273 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold660_size117387-snap-gene-0.24 (protein:Tk06668 transcript:maker-scaffold660_size117387-snap-gene-0.24-mRNA-1 annotation:"truncated transposase")

HSP 1 Score: 58.5362 bits (140), Expect = 8.438e-12
Identity = 33/96 (34.38%), Postives = 49/96 (51.04%), Query Frame = 0 
Query:    5 KAFKYHQKKFPFPLPALSTLSKWISKFKCGPEIQYKLLDILNKQMDELFQMDAHLSRLGVLSFDEMELKRSYDYSPSFDQVFDPNKKNSSGIDRGL 100
            +A+ + + K    +P+  TL+KW+  FKC P IQ   +D L    D L Q  A   +L  LSF  M+L+R   Y     + + PNKK    + RG+
Sbjct:  310 RAYDFMRAKTCLAIPSRGTLAKWLDDFKCDPGIQ---IDCLRAVHDRLAQSPAPGEKLVALSFGAMDLRRKSGYDKKTRKTYGPNKKLQVVMIRGI 402
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003273 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003273 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592899033|gb|GAXK01059342.1|3.038e-151.72TSA: Calanus finmarchicus comp5587154_c0_seq1 tran... [more]
gi|592873019|gb|GAXK01084543.1|3.353e-129.41TSA: Calanus finmarchicus comp792974_c0_seq5 trans... [more]
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BLAST of EMLSAG00000003273 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000032734.734e-70100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s179:11496... [more]
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BLAST of EMLSAG00000003273 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
gi|88926256|sp|Q7M3K2.2|PELET_DROME2.549e-835.35RecName: Full=Transposable element P transposase; ... [more]
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BLAST of EMLSAG00000003273 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
gb|KFM70956.1|1.775e-1232.65Transposable element P transposase, partial [Stego... [more]
gb|KFM75205.1|2.202e-1029.90Transposable element P transposase, partial [Stego... [more]
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BLAST of EMLSAG00000003273 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 8
Match NameE-valueIdentityDescription
gi|675378054|gb|KFM70956.1|8.686e-1032.65Transposable element P transposase, partial [Stego... [more]
gi|1058159258|gb|JAS83277.1|5.271e-832.58hypothetical protein g.59023, partial [Homalodisca... [more]
gi|12830683|gb|AAK08182.1|6.903e-837.37putative transposase, partial [Drosophila affinis][more]
gi|13346916|gb|AAK08184.2|7.096e-837.37putative transposase, partial [Lordiphosa fenestra... [more]
gi|13346917|gb|AAK08185.2|7.439e-837.37putative transposase, partial [Lordiphosa magnipec... [more]
gi|675382308|gb|KFM75205.1|1.078e-729.90Transposable element P transposase, partial [Stego... [more]
gi|633843|gb|AAB31526.1|1.126e-737.37O-type P element protein {exons 0-3} [Drosophila b... [more]
gi|13346918|gb|AAK08186.2|1.665e-737.76putative transposase, partial [Lordiphosa miki][more]
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BLAST of EMLSAG00000003273 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold660_size117387-snap-gene-0.248.438e-1234.38protein:Tk06668 transcript:maker-scaffold660_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s179supercontigLSalAtl2s179:1149631..1150002 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus-LSalAtl2s179-processed-gene-10.12
Biotypeprotein_coding
EvidenceIEA
NoteTransposable element P transposase
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003273 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003273EMLSAT00000003273-699120Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s179:1149631..1150002-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003273-686039 ID=EMLSAG00000003273-686039|Name=EMLSAG00000003273|organism=Lepeophtheirus salmonis|type=gene|length=372bp|location=Sequence derived from alignment at LSalAtl2s179:1149631..1150002- (Lepeophtheirus salmonis)
ATGACTGGAGGAAAAGCCTTTAAATATCATCAGAAGAAATTCCCCTTCCC
CTTGCCAGCTTTATCCACATTAAGTAAATGGATTTCCAAATTTAAATGTG
GTCCTGAAATTCAATATAAACTTTTGGACATTTTAAATAAACAAATGGAT
GGTAAATATAGGAATACATTATTGTTATGGTTTATTGTAATTAATTATTT
GGGATTGTTTTCCTTTTTAGAGCTATTTCAAATGGATGCCCATTTAAGCC
GTCTTGGAGTGTTGTCTTTCGATGAAATGGAATTGAAACGAAGTTATGAC
TATTCTCCATCTTTTGATCAAGTGTTTGACCCGAACAAAAAGAATTCAAG
TGGCATTGATCGTGGTCTTTAA
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