EMLSAG00000003275, EMLSAG00000003275-686041 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003275 vs. C. finmarchicus
Match: gi|592850973|gb|GAXK01106571.1| (TSA: Calanus finmarchicus comp119725_c1_seq1 transcribed RNA sequence) HSP 1 Score: 69.3218 bits (168), Expect = 3.903e-13 Identity = 48/126 (38.10%), Postives = 65/126 (51.59%), Query Frame = 0 Query: 1 PICLTGSICSYIQKNEWGTSQAKICDCRN--VQCSPEWDPYDGRSITHSL-HQYKYCKDAPPPVPIC-HGSLPAYTSNHYYDEYGLKVAMKDNINCHCSNDXXXXXXXXXXRKHNV-YVVSISYFC 121 P C+ SIC+++Q N+ G S + C C + +QC WD +DG+SIT S QYKYC+ + P VP C H AY S Y KV +D+I C C + Y +R +V I YFC Sbjct: 245 PTCIGNSICAFLQANDKGVSVVRYCQCSSPALQCPVRWDAFDGKSITQSQSDQYKYCEKS-PDVPKCSHEDQVAYRSWQRYRN-ERKVESRDDIKCVCPDGHNYLDTKYDFRMEGEDAIVEIEYFC 616
BLAST of EMLSAG00000003275 vs. C. finmarchicus
Match: gi|592807052|gb|GAXK01147516.1| (TSA: Calanus finmarchicus comp43805_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 2.936e+0 Identity = 13/31 (41.94%), Postives = 15/31 (48.39%), Query Frame = 0 Query: 33 SPEWDPYDGRSITHSLHQYKYCKDAPPPVPI 63 S +W P D S H+ KY KD P P P Sbjct: 764 SSDWRPRDKSSTRRDKHERKYEKDTPLPTPT 856
BLAST of EMLSAG00000003275 vs. C. finmarchicus
Match: gi|592803269|gb|GAXK01151299.1| (TSA: Calanus finmarchicus comp791842_c1_seq2 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 5.466e+0 Identity = 23/93 (24.73%), Postives = 39/93 (41.94%), Query Frame = 0 Query: 113 YVVSISYFCKQ---------VLLEFQNTKMGKFRYKIVLRIKGGDHPSV-IARNLGIYRTTIYNNNKLYNETESFVNHNRSGILKLAHSRPHK 195 Y + ISY C + L + + T+ G +Y +V + K + P L I + + KLYNE + + + ILK +S + Sbjct: 1524 YHIGISYNCDECNYVATVKFSLKKHKETQHGTNKYMVVHKEKNHEDPEFKTEEQLDIESSIDIEDTKLYNEVDDVTSEDTRDILKELNSEDQQ 1802
BLAST of EMLSAG00000003275 vs. C. finmarchicus
Match: gi|592803270|gb|GAXK01151298.1| (TSA: Calanus finmarchicus comp791842_c1_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 5.468e+0 Identity = 23/93 (24.73%), Postives = 39/93 (41.94%), Query Frame = 0 Query: 113 YVVSISYFCKQ---------VLLEFQNTKMGKFRYKIVLRIKGGDHPSV-IARNLGIYRTTIYNNNKLYNETESFVNHNRSGILKLAHSRPHK 195 Y + ISY C + L + + T+ G +Y +V + K + P L I + + KLYNE + + + ILK +S + Sbjct: 1535 YHIGISYNCDECNYVATVKFSLKKHKETQHGTNKYMVVHKEKNHEDPEFKTEEQLDIESSIDIEDTKLYNEVDDVTSEDTRDILKELNSEDQQ 1813
BLAST of EMLSAG00000003275 vs. C. finmarchicus
Match: gi|592781792|gb|GAXK01172776.1| (TSA: Calanus finmarchicus comp1016001_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 8.226e+0 Identity = 12/54 (22.22%), Postives = 29/54 (53.70%), Query Frame = 0 Query: 91 NCHCSNDXXXXXXXXXXRKHNVYVVSISYFCKQVLLEFQNTKMGKFRYKIVLRI 144 C C +D+ + ++ ++Y+++I + +L F+ +K G F ++V+ I Sbjct: 197 ECACMHDQGTLIVPKKHKSTDIYILTIMVWYVHILFSFKESKSGAFLLQLVVSI 358
BLAST of EMLSAG00000003275 vs. C. finmarchicus
Match: gi|592928550|gb|GAXK01029989.1| (TSA: Calanus finmarchicus comp211423_c1_seq5 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 9.743e+0 Identity = 19/60 (31.67%), Postives = 26/60 (43.33%), Query Frame = 0 Query: 35 EWDPYDGRSITHSLHQYKYCK-DAPPPVPICHGSLPAYTSNHYYDEYGLKVAMKDNINCH 93 W PY + ITHS+ + +AP P S+ TS D G V + N+N H Sbjct: 129 SWTPYFSKEITHSIALRQVTSPNAPGPTNSVVTSM*IPTSLEQLDITGHNVQLSSNLNYH 308
BLAST of EMLSAG00000003275 vs. L. salmonis peptides
Match: EMLSAP00000003275 (pep:novel supercontig:LSalAtl2s:LSalAtl2s179:192:10465:1 gene:EMLSAG00000003275 transcript:EMLSAT00000003275 description:"augustus-LSalAtl2s179-processed-gene-0.0") HSP 1 Score: 430.254 bits (1105), Expect = 1.054e-154 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 Query: 1 PICLTGSICSYIQKNEWGTSQAKICDCRNVQCSPEWDPYDGRSITHSLHQYKYCKDAPPPVPICHGSLPAYTSNHYYDEYGLKVAMKDNINCHCSNDEEYETKYEYYRKHNVYVVSISYFCKQVLLEFQNTKMGKFRYKIVLRIKGGDHPSVIARNLGIYRTTIYNNNKLYNETESFVNHNRSGILKLAHSRPHKECEYEDKRKPS 206 PICLTGSICSYIQKNEWGTSQAKICDCRNVQCSPEWDPYDGRSITHSLHQYKYCKDAPPPVPICHGSLPAYTSNHYYDEYGLKVAMKDNINCHCSNDEEYETKYEYYRKHNVYVVSISYFCKQVLLEFQNTKMGKFRYKIVLRIKGGDHPSVIARNLGIYRTTIYNNNKLYNETESFVNHNRSGILKLAHSRPHKECEYEDKRKPS Sbjct: 1 PICLTGSICSYIQKNEWGTSQAKICDCRNVQCSPEWDPYDGRSITHSLHQYKYCKDAPPPVPICHGSLPAYTSNHYYDEYGLKVAMKDNINCHCSNDEEYETKYEYYRKHNVYVVSISYFCKQVLLEFQNTKMGKFRYKIVLRIKGGDHPSVIARNLGIYRTTIYNNNKLYNETESFVNHNRSGILKLAHSRPHKECEYEDKRKPS 206
BLAST of EMLSAG00000003275 vs. L. salmonis peptides
Match: EMLSAP00000007738 (pep:novel supercontig:LSalAtl2s:LSalAtl2s44:1499302:1502018:-1 gene:EMLSAG00000007738 transcript:EMLSAT00000007738 description:"snap-LSalAtl2s44-processed-gene-14.82") HSP 1 Score: 60.077 bits (144), Expect = 2.106e-11 Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0 Query: 145 KGGDHPSVIARNLGIYRTTIYNNNKLYNETESFVNHNRSG 184 K D+PSVIARN G RTT+YN K+YNETESFV+ +RSG Sbjct: 29 KTSDNPSVIARNFGTNRTTLYNTKKIYNETESFVDRDRSG 68
BLAST of EMLSAG00000003275 vs. Select Arthropod Genomes
Match: gb|KPM11567.1| (hypothetical protein QR98_0101400 [Sarcoptes scabiei]) HSP 1 Score: 56.225 bits (134), Expect = 5.804e-9 Identity = 34/120 (28.33%), Postives = 56/120 (46.67%), Query Frame = 0 Query: 7 SICSYIQKNEWGTSQAKICDC-RNVQCSPEWDPYDGRSITHSLHQYKYCKDAPPPVPICHGSLPAYTSNHYYDEY-GLKVAMKDNINCHCSNDEEYET-KYEYYRKHNVYVVSISYFCKQ 123 SIC ++Q N G ++ +C C NV C W+ +D R + H YK+CK + +C G AY S + G K++ + C C ND+ +T K + N+ + C++ Sbjct: 97 SICGFMQFNSAGLNRVPLCSCNENVDCHLAWNLFDRRIVRHGSDFYKFCK-QQTNLQLCRGDQVAYVSYGKMNLLTGEKLSEVQEMKCLCRNDQILKTNKTMFEMTENISIYGTEQICQK 215
BLAST of EMLSAG00000003275 vs. nr
Match: gi|1061486851|gb|ODN03938.1| (hypothetical protein Ocin01_02734 [Orchesella cincta]) HSP 1 Score: 59.3066 bits (142), Expect = 8.647e-8 Identity = 42/132 (31.82%), Postives = 61/132 (46.21%), Query Frame = 0 Query: 1 PICLTGSICSYIQKNEWGTSQAKICDCRN--VQCSPEWDPYDGRSITHSLHQYKYCKDAPPPVPICHGSLPAYTSNHYY----DEYGLKVAMKDNINCHCSNDEEYETKYEYYRKH--NVYVVSISYFCKQV 124 PIC SIC Y+Q N G + ++C C + C WD DG S+T QYK+C P + C + AY++ Y DE KV D ++C C D Y ++ + + ++ V SY C V Sbjct: 20 PICAPDSICGYLQANVRGINYQRLCACPSGFPSCPMSWDSDDGHSVTQGSDQYKFCGRH-PSLTTCEQNQAAYSTRMEYSKSTDELFAKV---DRLHCVCPEDHNYVLAHQNWGEADPDIEAVEFSYTCALV 147
BLAST of EMLSAG00000003275 vs. nr
Match: gi|942310009|gb|JAN36937.1| (hypothetical protein [Daphnia magna] >gi|1022762130|gb|KZS07984.1| Uncharacterized protein APZ42_028365 [Daphnia magna]) HSP 1 Score: 59.6918 bits (143), Expect = 1.792e-7 Identity = 38/127 (29.92%), Postives = 63/127 (49.61%), Query Frame = 0 Query: 1 PICLTGSICSYIQKNEWGTSQAKICDCRN-VQCSPEWDPYDGRSITHSLHQYKYCKDAPPPVPICHGSLPAYTSNHYYDE-YGLKVAMKDNINCHC----SNDEEYETKYEYYRKHNVYVVSISYFC 121 P+C +IC+Y+Q N G + +C C +C WD DG SIT QYKYC+ A P + C + AYT+ + G +++ D +C C +N + ++++E + +S +Y C Sbjct: 50 PVCAGNTICAYLQANARGINTQPLCSCAGPSRCPLIWDNEDGHSITQGSDQYKYCRKA-PTLRTCQRGMTAYTTVSLMSKSTGRMLSLNDVNHCICPGQSANYDLVDSQFEDV-DDDTESMSTTYVC 174
BLAST of EMLSAG00000003275 vs. nr
Match: gi|942402307|gb|JAN83083.1| (hypothetical protein [Daphnia magna]) HSP 1 Score: 59.6918 bits (143), Expect = 4.518e-7 Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 0 Query: 1 PICLTGSICSYIQKNEWGTSQAKICDCRN-VQCSPEWDPYDGRSITHSLHQYKYCKDAPPPVPICHGSLPAYTSNHYYDEYGLKVAMKDNINCHC 94 P+C +IC+Y+Q N G + +C C +C WD DG SIT QYKYC+ A P + C + AYT+ + ++ +++N HC Sbjct: 81 PVCAGNTICAYLQANARGINTQPLCSCAGPSRCPLIWDNEDGHSITQGSDQYKYCRKA-PTLRTCQRGMTAYTTVSLMSKSTGRMLSLNDVN-HC 173
BLAST of EMLSAG00000003275 vs. nr
Match: gi|1005939242|ref|XP_015782169.1| (PREDICTED: uncharacterized protein LOC107360059 [Tetranychus urticae]) HSP 1 Score: 58.151 bits (139), Expect = 5.887e-7 Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0 Query: 7 SICSYIQKNEWGTSQAKICDCRNV-QCSPEWDPYDGRSITHSLHQYKYCKDAPPPVP 62 S CSY++ N G S IC C+N C ++D YDGR+I H + QYKYC++AP P Sbjct: 43 SACSYVELNSMGISVQNICRCKNFNSCPDQFDRYDGRTIVHGIGQYKYCEEAPRLRP 99
BLAST of EMLSAG00000003275 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold191_size271209-snap-gene-1.29 (protein:Tk06181 transcript:maker-scaffold191_size271209-snap-gene-1.29-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_192258") HSP 1 Score: 50.0618 bits (118), Expect = 1.478e-7 Identity = 26/72 (36.11%), Postives = 38/72 (52.78%), Query Frame = 0 Query: 130 NTKMGKF----RYKIVLRIKGGDHPSVIARNLGIYRTTIYNNNKLYNETESFVNHNRSGILKLAHSRPHKEC 197 N+K G + R K+V ++ GD P+ IA+ GI R+T+Y KLY+ET F G K H+ +E Sbjct: 486 NSKSGTYLINIREKVVALLEAGDKPTDIAKRFGIARSTVYMAKKLYDETGGFKKRENGGSAKSVHTEGLQEA 557 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003275 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003275 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000003275 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000003275 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003275 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000003275 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 4
BLAST of EMLSAG00000003275 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s179:192..10465+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003275-686041 ID=EMLSAG00000003275-686041|Name=EMLSAG00000003275|organism=Lepeophtheirus salmonis|type=gene|length=10274bp|location=Sequence derived from alignment at LSalAtl2s179:192..10465+ (Lepeophtheirus salmonis)back to top Add to Basket
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