EMLSAG00000003355, EMLSAG00000003355-686121 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003355
Unique NameEMLSAG00000003355-686121
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003355 vs. C. finmarchicus
Match: gi|592871736|gb|GAXK01085826.1| (TSA: Calanus finmarchicus comp79518_c4_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.719e+0
Identity = 10/29 (34.48%), Postives = 20/29 (68.97%), Query Frame = 0 
Query:   32 QDLNEEDKRYELDNMLRRLFPATETSILL 60
            +D+  EDK++++ + +  LFP T T+ +L
Sbjct: 1905 KDIVVEDKQFKMYSTVEELFPPTTTAFML 1991
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BLAST of EMLSAG00000003355 vs. C. finmarchicus
Match: gi|592871737|gb|GAXK01085825.1| (TSA: Calanus finmarchicus comp79518_c4_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.719e+0
Identity = 10/29 (34.48%), Postives = 20/29 (68.97%), Query Frame = 0 
Query:   32 QDLNEEDKRYELDNMLRRLFPATETSILL 60
            +D+  EDK++++ + +  LFP T T+ +L
Sbjct: 1905 KDIVVEDKQFKMYSTVEELFPPTTTAFML 1991
[Close]
BLAST of EMLSAG00000003355 vs. L. salmonis peptides
Match: EMLSAP00000003355 (pep:novel supercontig:LSalAtl2s:LSalAtl2s183:358228:358614:1 gene:EMLSAG00000003355 transcript:EMLSAT00000003355 description:"maker-LSalAtl2s183-snap-gene-3.6")

HSP 1 Score: 143.28 bits (360), Expect = 7.114e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    1 MIHIIGSNLSQIITLVQLCEKLLLTNVDITDQDLNEEDKRYELDNMLRRLFPATETSILLNNSNMEFDNETE 72
            MIHIIGSNLSQIITLVQLCEKLLLTNVDITDQDLNEEDKRYELDNMLRRLFPATETSILLNNSNMEFDNETE
Sbjct:    1 MIHIIGSNLSQIITLVQLCEKLLLTNVDITDQDLNEEDKRYELDNMLRRLFPATETSILLNNSNMEFDNETE 72
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003355 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003355 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592871736|gb|GAXK01085826.1|4.719e+034.48TSA: Calanus finmarchicus comp79518_c4_seq2 transc... [more]
gi|592871737|gb|GAXK01085825.1|4.719e+034.48TSA: Calanus finmarchicus comp79518_c4_seq1 transc... [more]
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BLAST of EMLSAG00000003355 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000033557.114e-46100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s183:35822... [more]
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BLAST of EMLSAG00000003355 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003355 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003355 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003355 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s183supercontigLSalAtl2s183:358228..358614 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s183-snap-gene-3.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003355 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003355EMLSAT00000003355-699202Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s183:358228..358614+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003355-686121 ID=EMLSAG00000003355-686121|Name=EMLSAG00000003355|organism=Lepeophtheirus salmonis|type=gene|length=387bp|location=Sequence derived from alignment at LSalAtl2s183:358228..358614+ (Lepeophtheirus salmonis)
ATGATACACATAATCGGATCAAACTTGTCCCAGATTATTACATTAGTACA
GCTTTGTGAGAAATTGCTCTTAACTAATGTTGATATTACGGATCAGGATT
TAAATGAGGAAGATAAAAGATATGAGCTTGACAATATGTTAAGAAGGTTA
TTTCCTGCAACTGAAACTAGTATCCTATTAAATAATAGTAGTAAATATCA
TCAAATTGAAGAAATTTGTATTATTGTTTGAATACTTCAAAATGTTCTCA
AATATGTAATTTTAGACATATCCCCTTGTTTTATTTCTTGATCCTGAATT
TTCCAAATACATAAATCTTTCAGTTATCGATCTTTATGAACTATTTTTTG
ATGAAAAGATATGGAGTTTGATAATGAAACAGAATAA
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