EMLSAG00000003383, EMLSAG00000003383-686149 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003383
Unique NameEMLSAG00000003383-686149
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592749485|gb|GAXK01204928.1| (TSA: Calanus finmarchicus comp88222_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 6.365e-6
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 0 
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAA 71
            HQ+IQHG +  V  S+H+ HG HHASV +QP A P  VH    A  K + A
Sbjct:  118 HQSIQHGASPAVVVSVHKKHGAHHASVATQPHASPQSVHGHGYAAQKQVVA 270
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778788|gb|GAXK01175780.1| (TSA: Calanus finmarchicus comp3324_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 8.626e-6
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592749486|gb|GAXK01204927.1| (TSA: Calanus finmarchicus comp88222_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 8.971e-6
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 0 
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAA 71
            HQ+IQHG +  V  S+H+ HG HHASV +QP A P  VH    A  K + A
Sbjct:  119 HQSIQHGASPAVVVSVHKKHGAHHASVATQPHASPQSVHGHGYAAQKQVVA 271
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778789|gb|GAXK01175779.1| (TSA: Calanus finmarchicus comp3324_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 4.948e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778790|gb|GAXK01175778.1| (TSA: Calanus finmarchicus comp3324_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 4.967e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778791|gb|GAXK01175777.1| (TSA: Calanus finmarchicus comp3324_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 4.984e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778792|gb|GAXK01175776.1| (TSA: Calanus finmarchicus comp3324_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 5.002e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592820214|gb|GAXK01134354.1| (TSA: Calanus finmarchicus comp92037_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 2.316e-4
Identity = 26/50 (52.00%), Postives = 30/50 (60.00%), Query Frame = 0 
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIA 70
            HQ  + G+A  V  S+H+PHG  HASV SQP A P  VH  Y    KPIA
Sbjct:  319 HQVFKQGNAPAVSVSVHKPHGAVHASVASQPHAAPQSVHG-YGGYEKPIA 465
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592879247|gb|GAXK01078654.1| (TSA: Calanus finmarchicus comp208406_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.527e+0
Identity = 12/27 (44.44%), Postives = 17/27 (62.96%), Query Frame = 0 
Query:   30 APVHTSIHRPHGVHHASVVSQPAADPS 56
            A +H  +  PHG HHA ++  P+AD S
Sbjct:  316 ALLHACLLCPHGTHHAPLLLMPSADCS 396
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BLAST of EMLSAG00000003383 vs. L. salmonis peptides
Match: EMLSAP00000003383 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1864:7807:9540:-1 gene:EMLSAG00000003383 transcript:EMLSAT00000003383 description:"snap_masked-LSalAtl2s1864-processed-gene-0.1")

HSP 1 Score: 158.303 bits (399), Expect = 1.450e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 
Query:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAASFQIYMLSL 80
            MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAASFQIYMLSL
Sbjct:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAASFQIYMLSL 80
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BLAST of EMLSAG00000003383 vs. L. salmonis peptides
Match: EMLSAP00000003353 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1834:174757:175847:1 gene:EMLSAG00000003353 transcript:EMLSAT00000003353 description:"maker-LSalAtl2s1834-augustus-gene-0.3")

HSP 1 Score: 124.79 bits (312), Expect = 3.411e-36
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0 
Query:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAA 71
            MKVF+  S LLALASA+QSSHQTIQHGHAAPVHTSIH+PHG +HASVVSQPAADP+DVHNPY ADYKPIAA
Sbjct:   35 MKVFIAFSTLLALASADQSSHQTIQHGHAAPVHTSIHKPHGSYHASVVSQPAADPNDVHNPYNADYKPIAA 105
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BLAST of EMLSAG00000003383 vs. L. salmonis peptides
Match: EMLSAP00000004844 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2560:13440:35521:-1 gene:EMLSAG00000004844 transcript:EMLSAT00000004844 description:"augustus-LSalAtl2s2560-processed-gene-0.2")

HSP 1 Score: 67.3958 bits (163), Expect = 2.542e-15
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 
Query:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASV 47
             +VF+ IS LLA+ SA+QSSHQTIQHGH+AP HTS+H+PHG H  +V
Sbjct:   52 RQVFITISTLLAVVSADQSSHQTIQHGHSAPSHTSLHKPHGSHRHAV 98
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BLAST of EMLSAG00000003383 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold612_size124412-snap-gene-0.28 (protein:Tk03324 transcript:maker-scaffold612_size124412-snap-gene-0.28-mRNA-1 annotation:"cuticle protein")

HSP 1 Score: 67.3958 bits (163), Expect = 3.948e-15
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 0 
Query:    4 FVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTAD 65
            FV + ++LALA+A+QSSHQ+I+HG+A  V TS+H+PHG  H+ VVSQP+A P++V   Y  +
Sbjct:  248 FVAVLSVLALAAADQSSHQSIKHGNAPAVTTSVHKPHGSAHSQVVSQPSAQPNEVGQAYNEE 309
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BLAST of EMLSAG00000003383 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold612_size124412-snap-gene-0.27 (protein:Tk03325 transcript:maker-scaffold612_size124412-snap-gene-0.27-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC103328856")

HSP 1 Score: 58.151 bits (139), Expect = 2.874e-12
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 0 
Query:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTAD 65
            MK FV + +LLALA+A+QSSHQ+I+HG+A  V TS+H+PHG  H+ VVSQP+A P++V   Y  +
Sbjct:    1 MKGFVAVLSLLALAAADQSSHQSIKHGNAPAVTTSVHKPHGSAHSQVVSQPSAQPNEVGQAYNEE 65
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BLAST of EMLSAG00000003383 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold411_size179879-processed-gene-0.22 (protein:Tk06331 transcript:snap_masked-scaffold411_size179879-processed-gene-0.22-mRNA-1 annotation:"cuticle protein")

HSP 1 Score: 55.0694 bits (131), Expect = 7.058e-11
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:   17 NQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTAD 65
            +QSSHQ+I+HG+A  V TS+H+PHG  H+ VVSQP+A P++V   Y  +
Sbjct:  356 DQSSHQSIKHGNAPAVTTSVHKPHGSAHSQVVSQPSAQPNEVGQAYNEE 404
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003383 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592749485|gb|GAXK01204928.1|6.365e-649.02TSA: Calanus finmarchicus comp88222_c0_seq2 transc... [more]
gi|592778788|gb|GAXK01175780.1|8.626e-657.50TSA: Calanus finmarchicus comp3324_c1_seq6 transcr... [more]
gi|592749486|gb|GAXK01204927.1|8.971e-649.02TSA: Calanus finmarchicus comp88222_c0_seq1 transc... [more]
gi|592778789|gb|GAXK01175779.1|4.948e-557.50TSA: Calanus finmarchicus comp3324_c1_seq5 transcr... [more]
gi|592778790|gb|GAXK01175778.1|4.967e-557.50TSA: Calanus finmarchicus comp3324_c1_seq4 transcr... [more]
gi|592778791|gb|GAXK01175777.1|4.984e-557.50TSA: Calanus finmarchicus comp3324_c1_seq3 transcr... [more]
gi|592778792|gb|GAXK01175776.1|5.002e-557.50TSA: Calanus finmarchicus comp3324_c1_seq2 transcr... [more]
gi|592820214|gb|GAXK01134354.1|2.316e-452.00TSA: Calanus finmarchicus comp92037_c0_seq1 transc... [more]
gi|592879247|gb|GAXK01078654.1|1.527e+044.44TSA: Calanus finmarchicus comp208406_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003383 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000033831.450e-51100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1864:7807... [more]
EMLSAP000000033533.411e-3685.92pep:novel supercontig:LSalAtl2s:LSalAtl2s1834:1747... [more]
EMLSAP000000048442.542e-1565.96pep:novel supercontig:LSalAtl2s:LSalAtl2s2560:1344... [more]
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BLAST of EMLSAG00000003383 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003383 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003383 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003383 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 3
Match NameE-valueIdentityDescription
maker-scaffold612_size124412-snap-gene-0.283.948e-1553.23protein:Tk03324 transcript:maker-scaffold612_size1... [more]
maker-scaffold612_size124412-snap-gene-0.272.874e-1255.38protein:Tk03325 transcript:maker-scaffold612_size1... [more]
snap_masked-scaffold411_size179879-processed-gene-0.227.058e-1153.06protein:Tk06331 transcript:snap_masked-scaffold411... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1864supercontigLSalAtl2s1864:7807..9540 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1864-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003383 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003383EMLSAT00000003383-699230Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1864:7807..9540-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003383-686149 ID=EMLSAG00000003383-686149|Name=EMLSAG00000003383|organism=Lepeophtheirus salmonis|type=gene|length=1734bp|location=Sequence derived from alignment at LSalAtl2s1864:7807..9540- (Lepeophtheirus salmonis)
ATGAAGGTACTGGGAAACAAACTAATATAACATACAAACATCTAATCATT
CACTTTTTTATCAGGTTTTCGTTGTTATTTCCGCTCTTTTGGCTCTTGCC
TCTGCTAACCAATCCAGTCATCAAACCATCCAACATGGACATGCTGCTCC
TGTCCACACCTCCATCCACAGACCTCATGGTGTTCATCATGCTTCCGTAG
TCAGCCAACCCGCTGCTGATCCCTCTGATGTTCACAACCCCTACACTGCT
GACTACAAGCCTATTGCTGCTGTCCACGCYCCAGCTCATGCCCCAGTTCA
CGCTCCCTATCACCCTGCTCCTTACCATCCGGATCCTTATCACCCAGCTC
CCTATCKCCCTGCTCCTTACCATCCGGCTCCCTACCKCCCAGCCCCTGTT
GTTCACAGACCAGCTCCTTACCACCCAGCTCCCGTTGTCCACAAGCCTTC
TCCCTATCACGCTGCTGAGATCTACGGTGATAGTCCCGCCGTCTACCAAT
ACGGATATGCTGTCGCTGATGACTATGCTGGAACCAACTTCGCTGCCAAC
GAGAACAGAGACGGATACTCCACCAACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAATGGATCCAAGTTAAAACTTGTTATTGGATTTTCA
TTTTAATTAATGATTCTTGATCCTATTTAAGTCATCTATTTTTCAAGCCA
TTCCAATCATAGATTTGGCTTCCTATTTCAYAATAAATTTCTATTTTGAA
ATTTACATTGTTATTTAGTTAATTATTCTTGAAATAATTAAAGTTGTCAT
ATATTTTTGTATAAAACCAAACATAGGAAATTATATATTTTTTAAATATT
TGAGAGCTTCCAAATATATATGCTTTCACTTTAA
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