EMLSAG00000003383, EMLSAG00000003383-686149 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003383
Unique NameEMLSAG00000003383-686149
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592749485|gb|GAXK01204928.1| (TSA: Calanus finmarchicus comp88222_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 6.365e-6
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 0
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAA 71
            HQ+IQHG +  V  S+H+ HG HHASV +QP A P  VH    A  K + A
Sbjct:  118 HQSIQHGASPAVVVSVHKKHGAHHASVATQPHASPQSVHGHGYAAQKQVVA 270          
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778788|gb|GAXK01175780.1| (TSA: Calanus finmarchicus comp3324_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 8.626e-6
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200          
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592749486|gb|GAXK01204927.1| (TSA: Calanus finmarchicus comp88222_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 8.971e-6
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 0
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAA 71
            HQ+IQHG +  V  S+H+ HG HHASV +QP A P  VH    A  K + A
Sbjct:  119 HQSIQHGASPAVVVSVHKKHGAHHASVATQPHASPQSVHGHGYAAQKQVVA 271          
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778789|gb|GAXK01175779.1| (TSA: Calanus finmarchicus comp3324_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 4.948e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200          
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778790|gb|GAXK01175778.1| (TSA: Calanus finmarchicus comp3324_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 4.967e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200          
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778791|gb|GAXK01175777.1| (TSA: Calanus finmarchicus comp3324_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 4.984e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200          
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592778792|gb|GAXK01175776.1| (TSA: Calanus finmarchicus comp3324_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 5.002e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHN 60
            HQ+I+ G+A  V  S+H+PHG  HASVVSQP A P  VH 
Sbjct:   81 HQSIKQGNAPAVSHSVHKPHGAVHASVVSQPHAAPQSVHG 200          
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592820214|gb|GAXK01134354.1| (TSA: Calanus finmarchicus comp92037_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 2.316e-4
Identity = 26/50 (52.00%), Postives = 30/50 (60.00%), Query Frame = 0
Query:   21 HQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIA 70
            HQ  + G+A  V  S+H+PHG  HASV SQP A P  VH  Y    KPIA
Sbjct:  319 HQVFKQGNAPAVSVSVHKPHGAVHASVASQPHAAPQSVHG-YGGYEKPIA 465          
BLAST of EMLSAG00000003383 vs. C. finmarchicus
Match: gi|592879247|gb|GAXK01078654.1| (TSA: Calanus finmarchicus comp208406_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.527e+0
Identity = 12/27 (44.44%), Postives = 17/27 (62.96%), Query Frame = 0
Query:   30 APVHTSIHRPHGVHHASVVSQPAADPS 56
            A +H  +  PHG HHA ++  P+AD S
Sbjct:  316 ALLHACLLCPHGTHHAPLLLMPSADCS 396          
BLAST of EMLSAG00000003383 vs. L. salmonis peptides
Match: EMLSAP00000003383 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1864:7807:9540:-1 gene:EMLSAG00000003383 transcript:EMLSAT00000003383 description:"snap_masked-LSalAtl2s1864-processed-gene-0.1")

HSP 1 Score: 158.303 bits (399), Expect = 1.450e-51
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAASFQIYMLSL 80
            MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAASFQIYMLSL
Sbjct:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAASFQIYMLSL 80          
BLAST of EMLSAG00000003383 vs. L. salmonis peptides
Match: EMLSAP00000003353 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1834:174757:175847:1 gene:EMLSAG00000003353 transcript:EMLSAT00000003353 description:"maker-LSalAtl2s1834-augustus-gene-0.3")

HSP 1 Score: 124.79 bits (312), Expect = 3.411e-36
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 0
Query:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTADYKPIAA 71
            MKVF+  S LLALASA+QSSHQTIQHGHAAPVHTSIH+PHG +HASVVSQPAADP+DVHNPY ADYKPIAA
Sbjct:   35 MKVFIAFSTLLALASADQSSHQTIQHGHAAPVHTSIHKPHGSYHASVVSQPAADPNDVHNPYNADYKPIAA 105          
BLAST of EMLSAG00000003383 vs. L. salmonis peptides
Match: EMLSAP00000004844 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2560:13440:35521:-1 gene:EMLSAG00000004844 transcript:EMLSAT00000004844 description:"augustus-LSalAtl2s2560-processed-gene-0.2")

HSP 1 Score: 67.3958 bits (163), Expect = 2.542e-15
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0
Query:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASV 47
             +VF+ IS LLA+ SA+QSSHQTIQHGH+AP HTS+H+PHG H  +V
Sbjct:   52 RQVFITISTLLAVVSADQSSHQTIQHGHSAPSHTSLHKPHGSHRHAV 98          
BLAST of EMLSAG00000003383 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold612_size124412-snap-gene-0.28 (protein:Tk03324 transcript:maker-scaffold612_size124412-snap-gene-0.28-mRNA-1 annotation:"cuticle protein")

HSP 1 Score: 67.3958 bits (163), Expect = 3.948e-15
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 0
Query:    4 FVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTAD 65
            FV + ++LALA+A+QSSHQ+I+HG+A  V TS+H+PHG  H+ VVSQP+A P++V   Y  +
Sbjct:  248 FVAVLSVLALAAADQSSHQSIKHGNAPAVTTSVHKPHGSAHSQVVSQPSAQPNEVGQAYNEE 309          
BLAST of EMLSAG00000003383 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold612_size124412-snap-gene-0.27 (protein:Tk03325 transcript:maker-scaffold612_size124412-snap-gene-0.27-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC103328856")

HSP 1 Score: 58.151 bits (139), Expect = 2.874e-12
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 0
Query:    1 MKVFVVISALLALASANQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTAD 65
            MK FV + +LLALA+A+QSSHQ+I+HG+A  V TS+H+PHG  H+ VVSQP+A P++V   Y  +
Sbjct:    1 MKGFVAVLSLLALAAADQSSHQSIKHGNAPAVTTSVHKPHGSAHSQVVSQPSAQPNEVGQAYNEE 65          
BLAST of EMLSAG00000003383 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold411_size179879-processed-gene-0.22 (protein:Tk06331 transcript:snap_masked-scaffold411_size179879-processed-gene-0.22-mRNA-1 annotation:"cuticle protein")

HSP 1 Score: 55.0694 bits (131), Expect = 7.058e-11
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 0
Query:   17 NQSSHQTIQHGHAAPVHTSIHRPHGVHHASVVSQPAADPSDVHNPYTAD 65
            +QSSHQ+I+HG+A  V TS+H+PHG  H+ VVSQP+A P++V   Y  +
Sbjct:  356 DQSSHQSIKHGNAPAVTTSVHKPHGSAHSQVVSQPSAQPNEVGQAYNEE 404          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003383 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003383 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592749485|gb|GAXK01204928.1|6.365e-649.02TSA: Calanus finmarchicus comp88222_c0_seq2 transc... [more]
gi|592778788|gb|GAXK01175780.1|8.626e-657.50TSA: Calanus finmarchicus comp3324_c1_seq6 transcr... [more]
gi|592749486|gb|GAXK01204927.1|8.971e-649.02TSA: Calanus finmarchicus comp88222_c0_seq1 transc... [more]
gi|592778789|gb|GAXK01175779.1|4.948e-557.50TSA: Calanus finmarchicus comp3324_c1_seq5 transcr... [more]
gi|592778790|gb|GAXK01175778.1|4.967e-557.50TSA: Calanus finmarchicus comp3324_c1_seq4 transcr... [more]
gi|592778791|gb|GAXK01175777.1|4.984e-557.50TSA: Calanus finmarchicus comp3324_c1_seq3 transcr... [more]
gi|592778792|gb|GAXK01175776.1|5.002e-557.50TSA: Calanus finmarchicus comp3324_c1_seq2 transcr... [more]
gi|592820214|gb|GAXK01134354.1|2.316e-452.00TSA: Calanus finmarchicus comp92037_c0_seq1 transc... [more]
gi|592879247|gb|GAXK01078654.1|1.527e+044.44TSA: Calanus finmarchicus comp208406_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003383 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000033831.450e-51100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1864:7807... [more]
EMLSAP000000033533.411e-3685.92pep:novel supercontig:LSalAtl2s:LSalAtl2s1834:1747... [more]
EMLSAP000000048442.542e-1565.96pep:novel supercontig:LSalAtl2s:LSalAtl2s2560:1344... [more]
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BLAST of EMLSAG00000003383 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003383 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003383 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003383 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 3
Match NameE-valueIdentityDescription
maker-scaffold612_size124412-snap-gene-0.283.948e-1553.23protein:Tk03324 transcript:maker-scaffold612_size1... [more]
maker-scaffold612_size124412-snap-gene-0.272.874e-1255.38protein:Tk03325 transcript:maker-scaffold612_size1... [more]
snap_masked-scaffold411_size179879-processed-gene-0.227.058e-1153.06protein:Tk06331 transcript:snap_masked-scaffold411... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1864supercontigLSalAtl2s1864:7807..9540 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1864-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003383 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003383EMLSAT00000003383-699230Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1864:7807..9540-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003383-686149 ID=EMLSAG00000003383-686149|Name=EMLSAG00000003383|organism=Lepeophtheirus salmonis|type=gene|length=1734bp|location=Sequence derived from alignment at LSalAtl2s1864:7807..9540- (Lepeophtheirus salmonis)
ATGAAGGTACTGGGAAACAAACTAATATAACATACAAACATCTAATCATT CACTTTTTTATCAGGTTTTCGTTGTTATTTCCGCTCTTTTGGCTCTTGCC TCTGCTAACCAATCCAGTCATCAAACCATCCAACATGGACATGCTGCTCC TGTCCACACCTCCATCCACAGACCTCATGGTGTTCATCATGCTTCCGTAG TCAGCCAACCCGCTGCTGATCCCTCTGATGTTCACAACCCCTACACTGCT GACTACAAGCCTATTGCTGCTGTCCACGCYCCAGCTCATGCCCCAGTTCA CGCTCCCTATCACCCTGCTCCTTACCATCCGGATCCTTATCACCCAGCTC CCTATCKCCCTGCTCCTTACCATCCGGCTCCCTACCKCCCAGCCCCTGTT GTTCACAGACCAGCTCCTTACCACCCAGCTCCCGTTGTCCACAAGCCTTC TCCCTATCACGCTGCTGAGATCTACGGTGATAGTCCCGCCGTCTACCAAT ACGGATATGCTGTCGCTGATGACTATGCTGGAACCAACTTCGCTGCCAAC GAGAACAGAGACGGATACTCCACCAACNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNAATGGATCCAAGTTAAAACTTGTTATTGGATTTTCA TTTTAATTAATGATTCTTGATCCTATTTAAGTCATCTATTTTTCAAGCCA TTCCAATCATAGATTTGGCTTCCTATTTCAYAATAAATTTCTATTTTGAA ATTTACATTGTTATTTAGTTAATTATTCTTGAAATAATTAAAGTTGTCAT ATATTTTTGTATAAAACCAAACATAGGAAATTATATATTTTTTAAATATT TGAGAGCTTCCAAATATATATGCTTTCACTTTAA
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