EMLSAG00000003408, EMLSAG00000003408-686174 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003408
Unique NameEMLSAG00000003408-686174
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003408 vs. C. finmarchicus
Match: gi|592793411|gb|GAXK01161157.1| (TSA: Calanus finmarchicus comp34687_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 56.6102 bits (135), Expect = 6.914e-10
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 0 
Query:    3 PNIKRMKPKKTPGKSIHVSESGVGLLHNNSEYEMGRLNSDLSF 45
            PNIKRM+    P   +HVSESGVGLL +NSEYEMG L  D SF
Sbjct: 1922 PNIKRMQTLAKP-PPLHVSESGVGLLRDNSEYEMGNLRRDDSF 2047
[Close]
BLAST of EMLSAG00000003408 vs. C. finmarchicus
Match: gi|592793412|gb|GAXK01161156.1| (TSA: Calanus finmarchicus comp34687_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 56.6102 bits (135), Expect = 7.000e-10
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 0 
Query:    3 PNIKRMKPKKTPGKSIHVSESGVGLLHNNSEYEMGRLNSDLSF 45
            PNIKRM+    P   +HVSESGVGLL +NSEYEMG L  D SF
Sbjct: 1994 PNIKRMQTLAKP-PPLHVSESGVGLLRDNSEYEMGNLRRDDSF 2119
[Close]
BLAST of EMLSAG00000003408 vs. C. finmarchicus
Match: gi|592794641|gb|GAXK01159927.1| (TSA: Calanus finmarchicus comp628245_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.214e-1
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 0 
Query:    8 MKPKKTPGKSIHVSESGVGLLH-NNSEYEMGR 38
            M  KK  G  + VSESGVGLL+ N SE+E+G+
Sbjct:   37 MIDKKKAG--MKVSESGVGLLNRNESEFELGQ 126
[Close]
BLAST of EMLSAG00000003408 vs. C. finmarchicus
Match: gi|592794640|gb|GAXK01159928.1| (TSA: Calanus finmarchicus comp628245_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.461e-1
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 0 
Query:    8 MKPKKTPGKSIHVSESGVGLLH-NNSEYEMGR 38
            M  KK  G  + VSESGVGLL+ N SE+E+G+
Sbjct:   37 MIDKKKAG--MKVSESGVGLLNRNESEFELGQ 126
[Close]
BLAST of EMLSAG00000003408 vs. C. finmarchicus
Match: gi|592853931|gb|GAXK01103613.1| (TSA: Calanus finmarchicus comp167844_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 2.448e+0
Identity = 15/44 (34.09%), Postives = 23/44 (52.27%), Query Frame = 0 
Query:    4 NIKRMKPKKTPGKSIHVSESGVGLLH--NNSEYEMGRLNSDLSF 45
            N+ +M+P +  G SI     GVG+LH  N    +MG++   L  
Sbjct:  224 NLPQMRPHRISGYSI*KGVGGVGMLHLVNTELIQMGKVTWCLHL 355
[Close]
BLAST of EMLSAG00000003408 vs. L. salmonis peptides
Match: EMLSAP00000003408 (pep:novel supercontig:LSalAtl2s:LSalAtl2s187:518222:518527:-1 gene:EMLSAG00000003408 transcript:EMLSAT00000003408 description:"snap_masked-LSalAtl2s187-processed-gene-6.10")

HSP 1 Score: 120.939 bits (302), Expect = 1.580e-37
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MKPNIKRMKPKKTPGKSIHVSESGVGLLHNNSEYEMGRLNSDLSFLSASPTNFRLFTFL 59
            MKPNIKRMKPKKTPGKSIHVSESGVGLLHNNSEYEMGRLNSDLSFLSASPTNFRLFTFL
Sbjct:    1 MKPNIKRMKPKKTPGKSIHVSESGVGLLHNNSEYEMGRLNSDLSFLSASPTNFRLFTFL 59
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003408 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003408 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592793411|gb|GAXK01161157.1|6.914e-1065.12TSA: Calanus finmarchicus comp34687_c0_seq2 transc... [more]
gi|592793412|gb|GAXK01161156.1|7.000e-1065.12TSA: Calanus finmarchicus comp34687_c0_seq1 transc... [more]
gi|592794641|gb|GAXK01159927.1|2.214e-156.25TSA: Calanus finmarchicus comp628245_c0_seq1 trans... [more]
gi|592794640|gb|GAXK01159928.1|2.461e-156.25TSA: Calanus finmarchicus comp628245_c0_seq2 trans... [more]
gi|592853931|gb|GAXK01103613.1|2.448e+034.09TSA: Calanus finmarchicus comp167844_c0_seq5 trans... [more]
back to top
BLAST of EMLSAG00000003408 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000034081.580e-37100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s187:51822... [more]
back to top
BLAST of EMLSAG00000003408 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003408 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003408 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003408 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s187supercontigLSalAtl2s187:518222..518527 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s187-processed-gene-6.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003408 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003408EMLSAT00000003408-699255Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s187:518222..518527-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003408-686174 ID=EMLSAG00000003408-686174|Name=EMLSAG00000003408|organism=Lepeophtheirus salmonis|type=gene|length=306bp|location=Sequence derived from alignment at LSalAtl2s187:518222..518527- (Lepeophtheirus salmonis)
ATGAAACCCAATATCAAACGTATGAAACCAAAAAAGACCCCTGGAAAGTC
TATTCACGTATCGGAGTCTGGAGTTGGACTCTTGCACAACAATTCAGAGT
ATGAAATGGGACGTCTAAATAGTGATCTCTCTTTCCTTTCGGCATCCCCG
ACCAACTTGTAATTTGTATTATTACAAATATACTAGCTATATTTGTAGCC
CCAATGATGTATAGAAGAAGCATAAGAAGAAGAGGGCTTCCATCGTCTCT
CCTCGCCTCATTAATATTTTTTTTTTTACTTCAGTCGTCTATTCACATTT
CTTTAA
back to top
Add to Basket