EMLSAG00000003427, EMLSAG00000003427-686193 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003427
Unique NameEMLSAG00000003427-686193
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003427 vs. C. finmarchicus
Match: gi|592858084|gb|GAXK01099478.1| (TSA: Calanus finmarchicus comp447387_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.598e+0
Identity = 15/28 (53.57%), Postives = 17/28 (60.71%), Query Frame = 0 
Query:   46 YSYSLDYISCILDV--TIPGHHPTILYN 71
            YSY LDYI C+L V   +  HH  ILY 
Sbjct: 1609 YSYLLDYIHCVLVVKYLMFLHHLVILYK 1692
[Close]
BLAST of EMLSAG00000003427 vs. C. finmarchicus
Match: gi|592929894|gb|GAXK01028651.1| (TSA: Calanus finmarchicus comp280267_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.827e+0
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 0 
Query:    1 MNRYTIIGAEKEWEGGTTLVLSVQQSCCL 29
            ++ Y     ++E + G T VLS QQ CCL
Sbjct:   69 LSSYCYSQCQREHQSGRTPVLSTQQPCCL 155
[Close]
BLAST of EMLSAG00000003427 vs. C. finmarchicus
Match: gi|592772892|gb|GAXK01181676.1| (TSA: Calanus finmarchicus comp128260_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.771e+0
Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 0 
Query:    1 MNRYTIIGAEKEWEGGTTLVLSVQQSCCLGSSSNKNNRQHNTE 43
            M RY I+G +  +   T++ L +QQ   L S   ++  QH++E
Sbjct:  487 MRRYQIVGCQLLFVQRTSICLEIQQVLQLASPKLQDYCQHHSE 615
[Close]
BLAST of EMLSAG00000003427 vs. C. finmarchicus
Match: gi|592874460|gb|GAXK01083102.1| (TSA: Calanus finmarchicus comp388965_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.326e+0
Identity = 19/47 (40.43%), Postives = 20/47 (42.55%), Query Frame = 0 
Query:   21 LSVQQSCCLGSSSNKNNRQHNTETKYSYSLDYISCILDVTIPGHHPT 67
            LSVQQ CC   S+N  N     E  YS        IL   I G  PT
Sbjct: 2653 LSVQQLCCTSGSANFTNGGLLYEFLYS--------ILPARILGQRPT 2769
[Close]
BLAST of EMLSAG00000003427 vs. L. salmonis peptides
Match: EMLSAP00000003427 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:486105:487621:-1 gene:EMLSAG00000003427 transcript:EMLSAT00000003427 description:"maker-LSalAtl2s188-snap-gene-4.0")

HSP 1 Score: 158.688 bits (400), Expect = 8.493e-52
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 
Query:    1 MNRYTIIGAEKEWEGGTTLVLSVQQSCCLGSSSNKNNRQHNTETKYSYSLDYISCILDVTIPGHHPTILYNIYTPT 76
            MNRYTIIGAEKEWEGGTTLVLSVQQSCCLGSSSNKNNRQHNTETKYSYSLDYISCILDVTIPGHHPTILYNIYTPT
Sbjct:    1 MNRYTIIGAEKEWEGGTTLVLSVQQSCCLGSSSNKNNRQHNTETKYSYSLDYISCILDVTIPGHHPTILYNIYTPT 76
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003427 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003427 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592858084|gb|GAXK01099478.1|2.598e+053.57TSA: Calanus finmarchicus comp447387_c0_seq1 trans... [more]
gi|592929894|gb|GAXK01028651.1|3.827e+041.38TSA: Calanus finmarchicus comp280267_c0_seq1 trans... [more]
gi|592772892|gb|GAXK01181676.1|4.771e+032.56TSA: Calanus finmarchicus comp128260_c2_seq1 trans... [more]
gi|592874460|gb|GAXK01083102.1|7.326e+040.43TSA: Calanus finmarchicus comp388965_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000003427 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000034278.493e-52100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s188:48610... [more]
back to top
BLAST of EMLSAG00000003427 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003427 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003427 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003427 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s188supercontigLSalAtl2s188:486105..487621 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s188-snap-gene-4.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003427 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003427EMLSAT00000003427-699274Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s188:486105..487621-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003427-686193 ID=EMLSAG00000003427-686193|Name=EMLSAG00000003427|organism=Lepeophtheirus salmonis|type=gene|length=1517bp|location=Sequence derived from alignment at LSalAtl2s188:486105..487621- (Lepeophtheirus salmonis)
ATGAATCGATATACCATAATAGGAGCAGAAAAAGAGTGGGAAGGGGGAAC
AACTCTCGTTCTCTCTGTTCAACAATCGTGTTGCCTTGGTAGCAGCAGCA
ATAAAAACAACAGACAACATAATACAGAAACTAAGTAACACAAATATTCC
TGATTCCACAACAATATCAGAAAGAAGAAATAAAAGAAATTGAACAAAAC
TGGAGATCGAACCATGGATATACGCATCCATCTTTATCTTTACAACCCTT
TCCGTAAGTATCTTTTTCATATAAATGTTGTGTACAAGCTGCGATTTCTG
AACAAGTTACAATTTGAATTAGCAACTATATGACATTGATGCTGTCATTT
CATTTATATATATTTAAAATAAGCATTTCATGAGTAATATAACTATGGAC
ATTGGAACTTTAATTTGTGCCACAGAATATGTCGGAGTAATTATTAAGTA
AAAAAGTGAAACTGTATCATTAATATATTGCCCATCTATGACAGTGATTC
CCAAACGCGGCTACGCAAGATTATCAATAATCAATAAATATCTTTTGTAA
AATAAACGTCATAAATTTTTTTATAGACATCATTATTCGTGTGCAAAATT
ATACAACTACAGTGAATTTTACCGATTTCCCCCGTAAATCAACAAAAAAA
TATTGACAAAAGAAATCGTGTATTAGAGCTTCTTGACTTGGGAATGAGTC
ATGGCGAGATCTGTGACATTGTCCCCTGCTCCAAGGGTCTCAAGTCCAAG
GTTAAAAAGCTGAAGGACGATAGCAAGGGCCTTAAGAGGAAGCCTCAAAG
TATTGGGTAAAACTGAAAAAGGACAACATACTTCCTGTTTTCCAAAAGGT
CTCAAGATCGGCGCAGAGGTGTACCTTGACGTTATGGAGGCAGTGGMATT
TCTCTAGTTGAAGTCCAACTACTCCAAGGGCACTTATGTTTTTGAGTAAG
ACTCTGCTCCAGGCCACAAGGACTCTTTAAGTGGTGTGAAGACAACTTGG
CGAAGGTGGCCTCTGTTCTCAACAGACTCTATCTCTATTGACTATAGTAT
CTGAGGCCTGCACCACCTCTCATGTGAATTTCCTAAAGGCTGACATCTCG
GATGAATACGTCAAGAAGACCTGAAGATCTAGGATTGAGGCCAATGGGTT
CCACTTTGATACATAATTGTAAAAAGGGGCTTTACAGTGATGAAAAGGTT
GAGAATCACAGATATATAAAAATATTCAATTTATCACAAGTAATACTGCA
AAATCTTCAATTTTGTTGTTGTTGTTGTTGGTTCCAATTTGATTAGGTAT
TCAAGTTAAAACTTGTAAAAAAAACCGCAACTTATACACTACATAAATAA
AACTAGTATTCCTAGTTTTTGTTAAGTCAATGTGAGTCATTCTATAACTA
TGTATGTATTCGCATTATAGATACTCTTACTCGTTGGACTATATTTCCTG
TATCCTGGATGTTACCATCCCTGGCCATCACCCCACAATACTCTACAACA
TCTATACTCCTACTTAA
back to top
Add to Basket