EMLSAG00000003428, EMLSAG00000003428-686194 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003428
Unique NameEMLSAG00000003428-686194
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003428 vs. L. salmonis peptides
Match: EMLSAP00000003428 (pep:novel supercontig:LSalAtl2s:LSalAtl2s188:518809:520614:-1 gene:EMLSAG00000003428 transcript:EMLSAT00000003428 description:"maker-LSalAtl2s188-augustus-gene-5.16")

HSP 1 Score: 955.666 bits (2469), Expect = 0.000e+0
Identity = 473/473 (100.00%), Postives = 473/473 (100.00%), Query Frame = 0 
Query:    1 MMIDPNMQRYFQRIYGAKPSPEIIKSRPQRRPKRRTVFVNRLYEDSTKSPSIIFEDTFRRERRNSLERAPPPSSRLSSLSDSHRSSALSRKIDDFLNSVVIKEKEKSDVLRGSTRSLSSSNRSKRSVSSHRRMDYPLPDLSKVKSTLLNSKHYQGPRGRHQRRSASSERLHHVSTSSSHHQNPLRINHVQHSTDNESSQDSAYAGESSRQHTPTRTHHRHRRRPSMGFYEGHQAVGGNSSKFELSTYLRYLNEVTTDILAQGAYSPKSLNKILESRLAQYQKETSRREALEMMAKLKKDLGITSNKGPPTPPGPPICIQKDSGXCRERLSSAGSSCRRKRRPGLSCPSSNSGAPLNQLYRSRSCDDVLDIYSDKELFNLLKKDAGLDKKFANDVIRVVRGRSEENLPSLSRRRKSKDDRNFLKEGLQKENNEEEQDLYNDDEFEKSESKSGSSEEDPEEVKEEIEFSDDGSNG 473
            MMIDPNMQRYFQRIYGAKPSPEIIKSRPQRRPKRRTVFVNRLYEDSTKSPSIIFEDTFRRERRNSLERAPPPSSRLSSLSDSHRSSALSRKIDDFLNSVVIKEKEKSDVLRGSTRSLSSSNRSKRSVSSHRRMDYPLPDLSKVKSTLLNSKHYQGPRGRHQRRSASSERLHHVSTSSSHHQNPLRINHVQHSTDNESSQDSAYAGESSRQHTPTRTHHRHRRRPSMGFYEGHQAVGGNSSKFELSTYLRYLNEVTTDILAQGAYSPKSLNKILESRLAQYQKETSRREALEMMAKLKKDLGITSNKGPPTPPGPPICIQKDSGXCRERLSSAGSSCRRKRRPGLSCPSSNSGAPLNQLYRSRSCDDVLDIYSDKELFNLLKKDAGLDKKFANDVIRVVRGRSEENLPSLSRRRKSKDDRNFLKEGLQKENNEEEQDLYNDDEFEKSESKSGSSEEDPEEVKEEIEFSDDGSNG
Sbjct:    1 MMIDPNMQRYFQRIYGAKPSPEIIKSRPQRRPKRRTVFVNRLYEDSTKSPSIIFEDTFRRERRNSLERAPPPSSRLSSLSDSHRSSALSRKIDDFLNSVVIKEKEKSDVLRGSTRSLSSSNRSKRSVSSHRRMDYPLPDLSKVKSTLLNSKHYQGPRGRHQRRSASSERLHHVSTSSSHHQNPLRINHVQHSTDNESSQDSAYAGESSRQHTPTRTHHRHRRRPSMGFYEGHQAVGGNSSKFELSTYLRYLNEVTTDILAQGAYSPKSLNKILESRLAQYQKETSRREALEMMAKLKKDLGITSNKGPPTPPGPPICIQKDSGXCRERLSSAGSSCRRKRRPGLSCPSSNSGAPLNQLYRSRSCDDVLDIYSDKELFNLLKKDAGLDKKFANDVIRVVRGRSEENLPSLSRRRKSKDDRNFLKEGLQKENNEEEQDLYNDDEFEKSESKSGSSEEDPEEVKEEIEFSDDGSNG 473
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003428 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003428 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003428 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000034280.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s188:51880... [more]
back to top
BLAST of EMLSAG00000003428 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003428 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003428 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003428 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s188supercontigLSalAtl2s188:518809..520614 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s188-augustus-gene-5.16
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003428 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003428EMLSAT00000003428-699275Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s188:518809..520614-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003428-686194 ID=EMLSAG00000003428-686194|Name=EMLSAG00000003428|organism=Lepeophtheirus salmonis|type=gene|length=1806bp|location=Sequence derived from alignment at LSalAtl2s188:518809..520614- (Lepeophtheirus salmonis)
ATGATGATTGATCCGAACATGCAACGATATTTTCAACGAATCTACGGGGC
CAAACCCTCTCCAGAAATAATTAAATCTAGACCTCAGCGGAGGCCCAAAA
GACGAACTGTTTTTGTTAACCGACTTTATGAAGACTCTACAAAGAGTCCC
TCTATTATCTTTGAGGATACTTTTAGAAGAGAACGAAGAAATAGTTTGGA
AAGAGCTCCTCCCCCATCTTCCAGACTCTCCTCTCTGTCAGACTCTCATC
GATCATCCGCACTATCTAGGAAAATTGATGATTTTTTGAACTCAGTTGTG
ATAAAAGAGAAAGAAAAGAGTGATGTACTTCGGGGTTCAACTCGATCCCT
TTCTTCGAGTAATCGAAGTAAAAGATCTGTGTCATCACATCGACGCATGG
ACTATCCTCTTCCAGATCTTTCAAAAGTGAAATCCACTCTTCTGAATTCT
AAACACTATCAGGTAGCTTTCTTAATTATTCCAATGTACCTCATAATTCA
TAAATTATGTAATTCATCTATTATAATACTAAATCCTCAGGGTCCAAGAG
GACGACATCAAAGACGATCGGCCTCTTCTGAAAGACTTCACCATGTTTCA
ACATCATCATCTCATCATCAGAATCCACTTCGAATAAATCATGTTCAACA
TTCAACAGACAATGAATCGAGTCAAGACTCTGCTTATGCTGGGGAAAGCA
GTCGACAACACACCCCAACCAGAACACATCATCGACATAGAAGACGCCCT
TCTATGGGTTTTTATGAGGGTCACCAAGCTGTGGGTGGGAATTCCTCGAA
ATTTGAATTATCTACCTATTTGAGATATTTAAATGAAGTCACAACGGATA
TTTTGGCACAGGGAGCATATTCTCCAAAGAGTTTAAATAAGTAAAGATCA
AACAATCGTAGAGTTAGGCGTGCATTATCATACATATCTAGATATATAAA
ATCAATAGGGATATTTTACATGATTCTGTAAAAAAAAAAATCCATAATTC
TCATAGATGTTGCACATAAGAAACTTATGTATCACGAGATCTTAATAATT
AATGAAAGTCAATCCTCCTTCTCTGATTCATATACCTATCTCTTTGTGTA
TACATTGGGAGATATTATGTACATGCATTTAGATTGTATCAATTACACAA
ATATAACATATGACTTTATATAATGATCTTAACCTTTTTTCCAAAGGATC
CTAGAATCTCGGTTAGCTCAATACCAAAAAGAAACATCTCGAAGAGAAGC
TTTAGAAATGATGGCCAAATTAAAGAAAGATTTAGGAATTACCTCGAACA
AAGGACCACCTACACCTCCCGGTCCTCCAATTTGTATTCAAAAGGATAGT
GGCAGKTGTAGAGAACGTCTGAGCTCTGCTGGTAGTAGTTGCAGAAGAAA
GCGAAGACCAGGACTTTCTTGTCCTTCTTCAAATTCAGGAGCCCCTCTGA
ATCAACTCTATCGATCTCGTTCTTGTGATGACGTTCTAGACATCTATTCT
GATAAAGAACTCTTTAATTTGTTAAAAAAGGATGCAGGACTTGATAAAAA
GTTTGCAAACGATGTGATACGAGTTGTACGAGGTCGCTCGGAAGAGAATT
TACCTTCATTATCAAGGAGAAGGAAAAGTAAAGATGATAGAAATTTCCTT
AAGGAGGGCCTTCAAAAGGAAAATAATGAAGAGGAGCAGGATTTGTATAA
TGATGATGAGTTCGAAAAGAGCGAATCAAAAAGTGGTAGTAGTGAAGAAG
ATCCGGAGGAGGTCAAAGAAGAAATAGAGTTTTCTGATGATGGTTCAAAT
GGTTAA
back to top
Add to Basket