EMLSAG00000003453, EMLSAG00000003453-686219 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003453
Unique NameEMLSAG00000003453-686219
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003453 vs. GO
Match: - (symbol:Lrch "Leucine-rich-repeats and calponin homology domain protein" species:7227 "Drosophila melanogaster" [GO:0007265 "Ras protein signal transduction" evidence=ISS] [GO:0005938 "cell cortex" evidence=IDA] [GO:0032154 "cleavage furrow" evidence=IDA] Pfam:PF00560 InterPro:IPR001611 InterPro:IPR001715 Pfam:PF00307 PROSITE:PS50021 PROSITE:PS51450 SMART:SM00033 INTERPRO:IPR000595 GO:GO:0005938 EMBL:AE014134 InterPro:IPR003591 SMART:SM00369 Gene3D:1.10.418.10 SUPFAM:SSF47576 PROSITE:PS50042 InterPro:IPR025875 Pfam:PF12799 GO:GO:0032154 GeneTree:ENSGT00740000115290 UniGene:Dm.444 GeneID:35041 KEGG:dme:Dmel_CG6860 CTD:35041 FlyBase:FBgn0032633 GenomeRNAi:35041 NextBio:791504 RefSeq:NP_609834.2 ProteinModelPortal:Q9VJE6 SMR:Q9VJE6 PRIDE:Q9VJE6 EnsemblMetazoa:FBtr0080969 UCSC:CG6860-RB InParanoid:Q9VJE6 PhylomeDB:Q9VJE6 PRO:PR:Q9VJE6 Bgee:Q9VJE6 Uniprot:Q9VJE6)

HSP 1 Score: 45.4394 bits (106), Expect = 2.772e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0 
Query:   37 LSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVA 82
            L+ SLE++L++A  SGEL L+ R LK FPR G   S   L DTV+A
Sbjct:   62 LTRSLERILEEAHFSGELILTNRKLKDFPRTGTKYS---LTDTVIA 104
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BLAST of EMLSAG00000003453 vs. C. finmarchicus
Match: gi|592844036|gb|GAXK01113508.1| (TSA: Calanus finmarchicus comp95459_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.854e-2
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 0 
Query:   48 AETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVA 82
            A  SGELKL  +NLK FP+ G    YN L+DT +A
Sbjct:  909 AVKSGELKLQSKNLKDFPKHG--DRYN-LQDTTLA 1004
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BLAST of EMLSAG00000003453 vs. C. finmarchicus
Match: gi|592844050|gb|GAXK01113494.1| (TSA: Calanus finmarchicus comp95459_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.039e-2
Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 0 
Query:   48 AETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVA 82
            A  SGELKL  +NLK FP+ G    YN L+DT +A
Sbjct:  461 AVKSGELKLQSKNLKDFPKHG--DRYN-LQDTTLA 556
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BLAST of EMLSAG00000003453 vs. C. finmarchicus
Match: gi|592923318|gb|GAXK01035097.1| (TSA: Calanus finmarchicus comp110292_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.338e+0
Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 0 
Query:   47 QAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVV 81
            + E SGE + + R L+      P+KS+ YLRD VV
Sbjct:   73 EQELSGEAEAAYRTLR---EVFPTKSWRYLRDKVV 168
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BLAST of EMLSAG00000003453 vs. C. finmarchicus
Match: gi|592923319|gb|GAXK01035096.1| (TSA: Calanus finmarchicus comp110292_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.161e+0
Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 0 
Query:   47 QAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVV 81
            + E SGE + + R L+      P+KS+ YLRD VV
Sbjct:   73 EQELSGEAEAAYRTLR---EVFPTKSWRYLRDKVV 168
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BLAST of EMLSAG00000003453 vs. C. finmarchicus
Match: gi|592836393|gb|GAXK01121151.1| (TSA: Calanus finmarchicus comp744929_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.674e+0
Identity = 12/31 (38.71%), Postives = 15/31 (48.39%), Query Frame = 0 
Query:   50 TSGELKLSGRNLKSFPRAGPSKSYNYLRDTV 80
            +   LK+    +  FPR GP   Y YLR  V
Sbjct:  663 SHPHLKIKRTIIMDFPRPGPEVPYGYLRSKV 755
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BLAST of EMLSAG00000003453 vs. L. salmonis peptides
Match: EMLSAP00000003453 (pep:novel supercontig:LSalAtl2s:LSalAtl2s18971:123:389:-1 gene:EMLSAG00000003453 transcript:EMLSAT00000003453 description:"augustus_masked-LSalAtl2s18971-processed-gene-0.0")

HSP 1 Score: 172.555 bits (436), Expect = 6.059e-57
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MMMALSVAXSSSPTPPPPSHHSQHPDGKGGVILASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVAGKIKAL 88
            MMMALSVAXSSSPTPPPPSHHSQHPDGKGGVILASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVAGKIKAL
Sbjct:    1 MMMALSVAXSSSPTPPPPSHHSQHPDGKGGVILASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVAGKIKAL 88
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BLAST of EMLSAG00000003453 vs. Select Arthropod Genomes
Match: gb|KYB27590.1| (Leucine-rich repeat and calponin homology domain-containing protein 1-like protein [Tribolium castaneum])

HSP 1 Score: 53.9138 bits (128), Expect = 3.473e-9
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVA 82
            + + L+ SLEK+LD A  SGELKLS R LK FP+   S+ YN LRDTV+A
Sbjct:   12 IQNQLTRSLEKILDDANQSGELKLSNRKLKDFPKT--SEKYN-LRDTVIA 58
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BLAST of EMLSAG00000003453 vs. Select Arthropod Genomes
Match: XP_006571220.1 (PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1 isoform X2 [Apis mellifera])

HSP 1 Score: 53.9138 bits (128), Expect = 3.491e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNY-LRDTVVA 82
            +   L+ SLE++L++A  SGELKLSGR LK FP+ G + S  Y L+DTV+A
Sbjct:   12 IQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKTGSSKYNLQDTVIA 62
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BLAST of EMLSAG00000003453 vs. Select Arthropod Genomes
Match: gb|KYB27591.1| (Leucine-rich repeat and calponin homology domain-containing protein 1-like protein [Tribolium castaneum])

HSP 1 Score: 53.9138 bits (128), Expect = 3.954e-9
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVA 82
            + + L+ SLEK+LD A  SGELKLS R LK FP+   S+ YN LRDTV+A
Sbjct:   12 IQNQLTRSLEKILDDANQSGELKLSNRKLKDFPKT--SEKYN-LRDTVIA 58
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BLAST of EMLSAG00000003453 vs. Select Arthropod Genomes
Match: XP_016773444.1 (PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1 isoform X1 [Apis mellifera])

HSP 1 Score: 53.9138 bits (128), Expect = 3.972e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNY-LRDTVVA 82
            +   L+ SLE++L++A  SGELKLSGR LK FP+ G + S  Y L+DTV+A
Sbjct:   12 IQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKTGSSKYNLQDTVIA 62
[Close]
BLAST of EMLSAG00000003453 vs. Select Arthropod Genomes
Match: EEB19707.1 (hypothetical protein Phum_PHUM584210 [Pediculus humanus corporis])

HSP 1 Score: 49.6766 bits (117), Expect = 1.212e-8
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVA 82
            L + L+ SLE++L++A  SGELKLSGR LK FP++G       L DTV+A
Sbjct:    5 LQNQLTKSLERILEEAHLSGELKLSGRKLKDFPKSGGKYD---LSDTVIA 51
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BLAST of EMLSAG00000003453 vs. Select Arthropod Genomes
Match: EAA13901.4 (AGAP010012-PA, partial [Anopheles gambiae str. PEST])

HSP 1 Score: 49.2914 bits (116), Expect = 1.314e-7
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 0 
Query:   35 SSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVA 82
            S L+ SLE++L+ A  SGELKLSGR LK FP+A  +  YN L DTV+A
Sbjct:    1 SQLTRSLERILEDAHLSGELKLSGRKLKDFPKA--AGKYN-LSDTVIA 45
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BLAST of EMLSAG00000003453 vs. nr
Match: gi|322780036|gb|EFZ09796.1| (hypothetical protein SINV_05952, partial [Solenopsis invicta])

HSP 1 Score: 54.299 bits (129), Expect = 4.846e-8
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNY-LRDTVVA 82
            +   L+ SLE++L++A  SGELKLSGR LK FP+ G + +  Y L+DTV+A
Sbjct:   12 IQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKAGTAKYNLQDTVIA 62
[Close]
BLAST of EMLSAG00000003453 vs. nr
Match: gi|607356331|gb|EZA50860.1| (hypothetical protein X777_10494 [Cerapachys biroi])

HSP 1 Score: 53.9138 bits (128), Expect = 8.895e-8
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGP---SKSYNYLRDTVVAGK 84
            +   L+ SLE++L++A  SGELKLSGR LK FP+ G    +  YN L+DTV+AG+
Sbjct:   12 IQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKGTGAAKYN-LQDTVIAGE 65
[Close]
BLAST of EMLSAG00000003453 vs. nr
Match: gi|861651060|gb|KMQ97570.1| (leucine-rich repeat and calponin domain-containing protein 1-like protein [Lasius niger])

HSP 1 Score: 53.9138 bits (128), Expect = 8.960e-8
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNY-LRDTVVA 82
            +   L+ SLE++L++A  SGELKLSGR LK FP+ G + +  Y L+DTV+A
Sbjct:   10 IQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKTGAAKYNLQDTVIA 60
[Close]
BLAST of EMLSAG00000003453 vs. nr
Match: gi|1026574707|gb|OAD61499.1| (Leucine-rich repeat and calponin homology domain-containing protein 3 [Eufriesea mexicana])

HSP 1 Score: 56.6102 bits (135), Expect = 2.153e-7
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNY-LRDTVVAGK 84
            +   L+ SLE++L++A  SGELKLSGR LK FP+ G + S  Y L+DTV+AG+
Sbjct:    5 IQKQLTRSLERILEEAHLSGELKLSGRKLKDFPKVGKTGSSKYNLQDTVIAGE 57
[Close]
BLAST of EMLSAG00000003453 vs. nr
Match: gi|1000181390|gb|KXJ67794.1| (hypothetical protein RP20_CCG011590 [Aedes albopictus])

HSP 1 Score: 53.5286 bits (127), Expect = 2.570e-7
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0 
Query:   33 LASSLSLSLEKLLDQAETSGELKLSGRNLKSFPRAGPSKSYNYLRDTVVAGKI 85
            + S L+ SLE++L+ A  SGELKLSGR LK FP+A     YN L DTV+AG++
Sbjct:   54 MQSQLTRSLERILEDANLSGELKLSGRKLKDFPKAAG--KYN-LSDTVIAGEL 103
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003453 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-2.772e-552.17symbol:Lrch "Leucine-rich-repeats and calponin hom... [more]
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BLAST of EMLSAG00000003453 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592844036|gb|GAXK01113508.1|3.854e-254.29TSA: Calanus finmarchicus comp95459_c2_seq2 transc... [more]
gi|592844050|gb|GAXK01113494.1|4.039e-254.29TSA: Calanus finmarchicus comp95459_c0_seq1 transc... [more]
gi|592923318|gb|GAXK01035097.1|2.338e+042.86TSA: Calanus finmarchicus comp110292_c2_seq2 trans... [more]
gi|592923319|gb|GAXK01035096.1|3.161e+042.86TSA: Calanus finmarchicus comp110292_c2_seq1 trans... [more]
gi|592836393|gb|GAXK01121151.1|5.674e+038.71TSA: Calanus finmarchicus comp744929_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003453 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000034536.059e-57100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s18971:123... [more]
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BLAST of EMLSAG00000003453 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003453 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 6
Match NameE-valueIdentityDescription
gb|KYB27590.1|3.473e-958.00Leucine-rich repeat and calponin homology domain-c... [more]
XP_006571220.13.491e-952.94PREDICTED: leucine-rich repeat and calponin homolo... [more]
gb|KYB27591.1|3.954e-958.00Leucine-rich repeat and calponin homology domain-c... [more]
XP_016773444.13.972e-952.94PREDICTED: leucine-rich repeat and calponin homolo... [more]
EEB19707.11.212e-852.00hypothetical protein Phum_PHUM584210 [Pediculus hu... [more]
EAA13901.41.314e-758.33AGAP010012-PA, partial [Anopheles gambiae str. PES... [more]
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BLAST of EMLSAG00000003453 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 5
Match NameE-valueIdentityDescription
gi|322780036|gb|EFZ09796.1|4.846e-850.98hypothetical protein SINV_05952, partial [Solenops... [more]
gi|607356331|gb|EZA50860.1|8.895e-850.91hypothetical protein X777_10494 [Cerapachys biroi][more]
gi|861651060|gb|KMQ97570.1|8.960e-850.98leucine-rich repeat and calponin domain-containing... [more]
gi|1026574707|gb|OAD61499.1|2.153e-752.83Leucine-rich repeat and calponin homology domain-c... [more]
gi|1000181390|gb|KXJ67794.1|2.570e-754.72hypothetical protein RP20_CCG011590 [Aedes albopic... [more]
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BLAST of EMLSAG00000003453 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s18971supercontigLSalAtl2s18971:123..389 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s18971-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003453 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003453EMLSAT00000003453-699300Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s18971:123..389-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003453-686219 ID=EMLSAG00000003453-686219|Name=EMLSAG00000003453|organism=Lepeophtheirus salmonis|type=gene|length=267bp|location=Sequence derived from alignment at LSalAtl2s18971:123..389- (Lepeophtheirus salmonis)
ATGATGATGGCCTTATCCGTGGCTGSCTCTTCTTCCCCCACACCTCCTCC
TCCATCACACCATTCGCAACATCCAGATGGAAAAGGAGGGGTTATACTGG
CTTCATCTCTTAGCCTCTCTTTGGAGAAACTCCTGGATCAGGCAGAAACA
AGTGGAGAGCTTAAATTGAGTGGACGGAATCTGAAATCCTTTCCACGAGC
AGGGCCCTCCAAATCCTATAATTATTTGAGGGATACGGTCGTTGCAGGTA
AAATAAAAGCACTTTAA
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