EMLSAG00000003461, EMLSAG00000003461-686227 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592784586|gb|GAXK01169982.1| (TSA: Calanus finmarchicus comp1312_c2_seq5 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 7.457e-3 Identity = 33/154 (21.43%), Postives = 64/154 (41.56%), Query Frame = 0 Query: 8 SYNPNHQRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRXXXXXXXXXICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIG---HWFCDSQCKNNHFKVPSQSRPIVKDVTCNGV--TSKKVCI 156 Y P + CR ++ C+P+F+ + V V+E+ C +V+ C + V ++IC Y + + T +++Y + + + C Y G H C + + +KVP + P+ +V+C K+VC+ Sbjct: 299 GYAPEY-YCRDTNTSVYAEVCVPAFAEKVTPVTLAVKEVVDNDYCFDRVLTICEETSTTVEREICTYVYEKEEVVAPCTTTQVTYDQKSETMKVTACGAAGYGYGHQQSYGQGEHQVCREEYQTQAYKVPLVTAPL--EVSCMLAYPAPKQVCV 751
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592784587|gb|GAXK01169981.1| (TSA: Calanus finmarchicus comp1312_c2_seq4 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 7.580e-3 Identity = 33/154 (21.43%), Postives = 64/154 (41.56%), Query Frame = 0 Query: 8 SYNPNHQRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRXXXXXXXXXICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIG---HWFCDSQCKNNHFKVPSQSRPIVKDVTCNGV--TSKKVCI 156 Y P + CR ++ C+P+F+ + V V+E+ C +V+ C + V ++IC Y + + T +++Y + + + C Y G H C + + +KVP + P+ +V+C K+VC+ Sbjct: 330 GYAPEY-YCRDTNTSVYAEVCVPAFAEKVTPVTLAVKEVVDNDYCFDRVLTICEETSTTVEREICTYVYEKEEVVAPCTTTQVTYDQKSETMKVTACGAAGYGYGHQQSYGQGEHQVCREEYQTQAYKVPLVTAPL--EVSCMLAYPAPKQVCV 782
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592784590|gb|GAXK01169978.1| (TSA: Calanus finmarchicus comp1312_c2_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 1.002e-2 Identity = 33/154 (21.43%), Postives = 64/154 (41.56%), Query Frame = 0 Query: 8 SYNPNHQRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRXXXXXXXXXICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIG---HWFCDSQCKNNHFKVPSQSRPIVKDVTCNGV--TSKKVCI 156 Y P + CR ++ C+P+F+ + V V+E+ C +V+ C + V ++IC Y + + T +++Y + + + C Y G H C + + +KVP + P+ +V+C K+VC+ Sbjct: 878 GYAPEY-YCRDTNTSVYAEVCVPAFAEKVTPVTLAVKEVVDNDYCFDRVLTICEETSTTVEREICTYVYEKEEVVAPCTTTQVTYDQKSETMKVTACGAAGYGYGHQQSYGQGEHQVCREEYQTQAYKVPLVTAPL--EVSCMLAYPAPKQVCV 1330
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592949113|gb|GAXK01009440.1| (TSA: Calanus finmarchicus comp1525631_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 6.261e-2 Identity = 30/141 (21.28%), Postives = 59/141 (41.84%), Query Frame = 0 Query: 16 CRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRXXXXXXXXXICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCI 156 CR +I C P F+ E+ N V+ + C +V C++ + ++IC Y + + +I++ + + C Y +G++ H +C + + +KVP + P+V + K+VCI Sbjct: 293 CRNTNTSIYAEVCSPDFAEEDSPNENKVKIVVDDNYCFDEVTTVCKESVSEIEREICTYEYTREEVATDCTSTKITFEERSESMKQTTCSPSGYGNLGYNAGDHQYCREEVQTQAYKVPVVTVPVVGSCMLSYPAPKRVCI 715
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592765936|gb|GAXK01188632.1| (TSA: Calanus finmarchicus comp592122_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.413e+0 Identity = 38/185 (20.54%), Postives = 68/185 (36.76%), Query Frame = 0 Query: 2 IPVLIGSYNPNH---------QRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRXXXXXXXXXICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHH------------------------IGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKK 153 IPV+ + +P H QRC + + C P+ + V + I + C+ V C + ++VV+ +CY Y + +K T E+ + D C +++Y GH +G+ + +C+N K+P V C+ V+ KK Sbjct: 324 IPVISHASSPGHVHHSSILTDQRCHIEEVELYAEVCTPTIERDCEDVKVKTRTIQTREDCVEVVRTVCTETEEVVDNMVCYYVYNMEKQEAKATTVEVQFDQNCVDETQKVCPKQKYGGYGHQGHCKEVKNEICYNVPKVNPSETTVTVGYPVPEKKCENKQVKLPK--------VKCDEVSEKK 854
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592765937|gb|GAXK01188631.1| (TSA: Calanus finmarchicus comp592122_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.415e+0 Identity = 38/185 (20.54%), Postives = 68/185 (36.76%), Query Frame = 0 Query: 2 IPVLIGSYNPNH---------QRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRXXXXXXXXXICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHH------------------------IGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKK 153 IPV+ + +P H QRC + + C P+ + V + I + C+ V C + ++VV+ +CY Y + +K T E+ + D C +++Y GH +G+ + +C+N K+P V C+ V+ KK Sbjct: 330 IPVISHASSPGHVHHSSILTDQRCHIEEVELYAEVCTPTIERDCEDVKVKTRTIQTREDCVEVVRTVCTETEEVVDNMVCYYVYNMEKQEAKATTVEVQFDQNCVDETQKVCPKQKYGGYGHQGHCKEVKNEICYNVPKVNPSETTVTVGYPVPEKKCENKQVKLPK--------VKCDEVSEKK 860
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592929853|gb|GAXK01028692.1| (TSA: Calanus finmarchicus comp281749_c2_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 2.623e+0 Identity = 19/59 (32.20%), Postives = 29/59 (49.15%), Query Frame = 0 Query: 99 LLSIDCWEERYKTVGHHHIGHWFCDSQCKN--NHFKVPSQSRPIVKDVTCNGVTSKKVC 155 L S +C + + HH I H+F DSQC + +F V +RP+ + C+ V C Sbjct: 3277 LFSSNCPLQFADEISHHIISHFFQDSQCSSPEEYFCV---TRPVSFRIKCSCVLDDNFC 3444
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592947328|gb|GAXK01011225.1| (TSA: Calanus finmarchicus comp23062_c1_seq3 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 3.585e+0 Identity = 37/182 (20.33%), Postives = 74/182 (40.66%), Query Frame = 0 Query: 2 IPVLIGSYNPNH---------QRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRXXXXXXXXXICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERY------KTVGHH---------------HIGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKK 153 IPV+ P+H Q+C + + C P+ + KV Q I + C+ V C + +++V+ ++CY Y + + ++ T ++ Y + ++ C E++Y KTV + +G+ + +C+N K+P V C+ V+ +K Sbjct: 369 IPVITHPSTPDHGGHTAVLTDQKCHIEEVELYAEVCTPTIERDCKKVKVKTQAINAKEDCVKIVRTVCTETEELVDNEVCYYVYNKEKQEAEATTVKVEYETKCEEETQKVCPEQQYGHQGYCKTVKNQVCYNVPVVSPDKTGVTVGYPVPEKKCENKPVKLPK--------VKCDEVSEEK 890
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592947327|gb|GAXK01011226.1| (TSA: Calanus finmarchicus comp23062_c1_seq4 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 4.067e+0 Identity = 37/182 (20.33%), Postives = 74/182 (40.66%), Query Frame = 0 Query: 2 IPVLIGSYNPNH---------QRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRXXXXXXXXXICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERY------KTVGHH---------------HIGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKK 153 IPV+ P+H Q+C + + C P+ + KV Q I + C+ V C + +++V+ ++CY Y + + ++ T ++ Y + ++ C E++Y KTV + +G+ + +C+N K+P V C+ V+ +K Sbjct: 297 IPVITHPSTPDHGGHTAVLTDQKCHIEEVELYAEVCTPTIERDCKKVKVKTQAINAKEDCVKIVRTVCTETEELVDNEVCYYVYNKEKQEAEATTVKVEYETKCEEETQKVCPEQQYGHQGYCKTVKNQVCYNVPVVSPDKTGVTVGYPVPEKKCENKPVKLPK--------VKCDEVSEEK 818
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Match: gi|592784584|gb|GAXK01169984.1| (TSA: Calanus finmarchicus comp1312_c2_seq7 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 4.966e+0 Identity = 26/109 (23.85%), Postives = 46/109 (42.20%), Query Frame = 0 Query: 104 CWEERYKTVGHHHIGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYXXXXXXXXXXXXXXXXXXTINTLVHRNATYHHSNYELTKPRCTWRRLILHYKKC 212 C Y + G+ H H +C + + +KVP + P+ + + K+VC+ IE+ E C+++ KC + V T + +P C L L + C Sbjct: 131 CGASGYGSPGYGHGEHQYCREEYQTQAYKVPLVTVPLEQSCSLAYPAPKQVCVTKAIEITEVKCEDKVENKCFNVAKFVDATNTVDQKEVIIGEPSCEQITLTLPTQSC 457
BLAST of EMLSAG00000003461 vs. L. salmonis peptides
Match: EMLSAP00000003461 (pep:novel supercontig:LSalAtl2s:LSalAtl2s18:1046240:1047427:1 gene:EMLSAG00000003461 transcript:EMLSAT00000003461 description:"maker-LSalAtl2s18-augustus-gene-11.13") HSP 1 Score: 442.58 bits (1137), Expect = 3.623e-159 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 Query: 1 MIPVLIGSYNPNHQRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRKVKKVVNKKICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYKIELEENVCKEEKVKKCITINTLVHRNATYHHSNYELTKPRCTWRRLILHYKKCDSKQY 217 MIPVLIGSYNPNHQRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRKVKKVVNKKICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYKIELEENVCKEEKVKKCITINTLVHRNATYHHSNYELTKPRCTWRRLILHYKKCDSKQY Sbjct: 1 MIPVLIGSYNPNHQRCRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRKVKKVVNKKICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIGHWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYKIELEENVCKEEKVKKCITINTLVHRNATYHHSNYELTKPRCTWRRLILHYKKCDSKQY 217
BLAST of EMLSAG00000003461 vs. L. salmonis peptides
Match: EMLSAP00000003483 (pep:novel supercontig:LSalAtl2s:LSalAtl2s18:977233:1016052:1 gene:EMLSAG00000003483 transcript:EMLSAT00000003483 description:"maker-LSalAtl2s18-augustus-gene-10.7") HSP 1 Score: 58.151 bits (139), Expect = 2.733e-10 Identity = 40/171 (23.39%), Postives = 73/171 (42.69%), Query Frame = 0 Query: 16 CRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRKVKKVVNKKICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIG----HWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYKIELEENVCKEEKVKKCITINTLV 182 CR +I + C PS + E++ V +V+ + C QV C + + V+++IC TY + E +++Y K + + + GH+ H C + + + VP P+ V + KK+C+ I++ E VC + K +KC + V Sbjct: 137 CRDTNTSIYADVCTPSIAVEQVPVERNVKNVQDNEYCYEQVRTVCEETSRSVDREICTYTYEQKPETLSATXTQVTYET-KSETMKVTTCSAAAPAYGHYAPAKPEEHQXCREEYQTQSYSVPLVDTPLEVPVELSVPEPKKICVTKAIQINEVVCNDIKERKCFNVAITV 306
BLAST of EMLSAG00000003461 vs. nr
Match: gi|155966286|gb|ABU41096.1| (hypothetical protein [Lepeophtheirus salmonis]) HSP 1 Score: 66.2402 bits (160), Expect = 5.616e-10 Identity = 46/192 (23.96%), Postives = 81/192 (42.19%), Query Frame = 0 Query: 30 PSFSSEELKVINDVQEIGSGVRCITQVIPKCRKVKKVVNKKICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIG----HWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYKIELEENVCKEEKVKKCITINTLVHRNATYHHSNYELTKPRCTWRRLILHYKKCDSKQY 217 PS + E++ V +V+ + C QV C + + V+++IC TY + E T +++Y K + + + GH+ H +C + + + VP P+ V + KK+C+ I++ E VC + K +KC + V T S +L +P C L L + C Y Sbjct: 5 PSIAVEQVPVERNVKNVQDNEYCYEQVRTVCEETSRSVDREICTYTYEQKPETLSATTTQVTYET-KSETMKVTTCSAAAPAYGHYAPAKPEEHQYCREEYQTQSYSVPLVDTPLEVPVELSVPEPKKICVTKAIQINEVVCNDIKERKCFNVAITVDAVETVEQSEVKLGEPDCNTVTLTLPTQACSKPGY 195
BLAST of EMLSAG00000003461 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold72_size415059-snap-gene-0.11 (protein:Tk08662 transcript:maker-scaffold72_size415059-snap-gene-0.11-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 72.4034 bits (176), Expect = 1.013e-15 Identity = 50/203 (24.63%), Postives = 86/203 (42.36%), Query Frame = 0 Query: 16 CRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRKVKKVVNKKICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIG---HWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYKIELEENVCKEEKVKKCITINTLVHRNATYHHSNYELTKPRCTWRRLILHYKKCDSK 215 CR +I C+P F++E V DV++ C TQ +C + K V ++IC Y++ E T +++Y + + + C Y G +H G H +C + + + VP P+ V K C+ + + E VCK+ + +KCI++ L + S L +P C L L + C + Sbjct: 30 CRDTNTSIYAEVCVPGFTNEVQPVELDVKKAADDEYCFTQTKTECEETTKNVEREICSYNYVQKKETLSATTTQVTYEKKSETMKVTSCKPAGY---GSNHYGSGDHQYCSEEYQTQEYSVPKVDTPVEVPVETAIPEPIKECVLKTLTITEVVCKDVETQKCISLTKLEEAKESVDTSQVILGEPNCKQITLTLPTEACSEQ 229
BLAST of EMLSAG00000003461 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold72_size415059-snap-gene-0.12 (protein:Tk08663 transcript:maker-scaffold72_size415059-snap-gene-0.12-mRNA-1 annotation:"dmx-like protein 1") HSP 1 Score: 71.2478 bits (173), Expect = 2.712e-15 Identity = 49/203 (24.14%), Postives = 85/203 (41.87%), Query Frame = 0 Query: 16 CRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRKVKKVVNKKICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIG---HWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYKIELEENVCKEEKVKKCITINTLVHRNATYHHSNYELTKPRCTWRRLILHYKKCDSK 215 CR +I C+P F++E V DV++ C TQ +C + K V ++IC Y++ E T +++Y + + + C Y G +H G H +C + + + VP P+ V K C+ + + E VC + + +KCI++ L + S L +P C L L + C + Sbjct: 30 CRDTNTSIYAEVCVPGFTNEVQPVELDVKKAADDEYCFTQTKTECEETTKNVEREICSYNYVQKKETRSATTTQVTYEKKSETMKVTSCKPAGY---GSNHYGSGDHQYCSEEYQTQEYSVPKVDTPVEVPVETAIPEPVKECVLKTLAITEVVCMDVETQKCISLTKLEEAKESVDTSQVILGEPNCKQITLTLPTEACSEQ 229
BLAST of EMLSAG00000003461 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold72_size415059-snap-gene-0.10 (protein:Tk08661 transcript:maker-scaffold72_size415059-snap-gene-0.10-mRNA-1 annotation:"dna polymerase i (pol i)") HSP 1 Score: 70.4774 bits (171), Expect = 3.734e-15 Identity = 49/203 (24.14%), Postives = 85/203 (41.87%), Query Frame = 0 Query: 16 CRRGKYAIKTNTCLPSFSSEELKVINDVQEIGSGVRCITQVIPKCRKVKKVVNKKICYNTYIESSEYSKVETHEISYTNEKKDLLSIDCWEERYKTVGHHHIG---HWFCDSQCKNNHFKVPSQSRPIVKDVTCNGVTSKKVCIPYKIELEENVCKEEKVKKCITINTLVHRNATYHHSNYELTKPRCTWRRLILHYKKCDSK 215 CR +I C+P F++E V DV++ C TQ +C + K V ++IC Y++ E T +++Y + + + C Y G +H G H +C + + + VP P+ V K C+ + + E VC + + +KCI++ L + S L +P C L L + C + Sbjct: 24 CRDTNTSIYAEVCVPGFTNEVQPVELDVKKAADDEYCFTQTKTECEETTKNVEREICSYNYVQKKETLSATTTQVTYEKKSETMKVTSCKPAGY---GSNHYGSGDHQYCSEEYQTQEYSVPKVDTPVEVPVETAIPEPVKECVLKTLAITEVVCMDVETQKCISLTKLEEAKESVDTSQVILGEPNCKQITLTLPTEACSEQ 223 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003461 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003461 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 11
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BLAST of EMLSAG00000003461 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000003461 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003461 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003461 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000003461 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s18:1046240..1047427+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003461-686227 ID=EMLSAG00000003461-686227|Name=EMLSAG00000003461|organism=Lepeophtheirus salmonis|type=gene|length=1188bp|location=Sequence derived from alignment at LSalAtl2s18:1046240..1047427+ (Lepeophtheirus salmonis)back to top Add to Basket
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