EMLSAG00000003498, EMLSAG00000003498-686264 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003498
Unique NameEMLSAG00000003498-686264
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003498 vs. C. finmarchicus
Match: gi|592929237|gb|GAXK01029308.1| (TSA: Calanus finmarchicus comp151802_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 2.587e+0
Identity = 23/84 (27.38%), Postives = 40/84 (47.62%), Query Frame = 0 
Query:   26 VLFDAAPQTSPAFIDYSSY---EPKVINSARQDSQDSNSLFPKERAVNGDDEQVEEQPEENISSDEFP--FHKIVRILAPQQLT 104
             + D+ P T P+  +  +Y   +P  + +A  + QD  +    ++   G+D+Q+E+Q        EFP  F  IV I   +Q T
Sbjct:   39 AMDDSNPNTDPSMEEDGNYLRNDPGQLVTAYYNVQDEEAFMLSDKDQKGNDDQIEKQ--------EFPTNFENIVNIDMNEQNT 266
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BLAST of EMLSAG00000003498 vs. C. finmarchicus
Match: gi|592921839|gb|GAXK01036536.1| (TSA: Calanus finmarchicus comp591256_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 9.254e+0
Identity = 25/101 (24.75%), Postives = 46/101 (45.54%), Query Frame = 0 
Query:   21 ECNSIVLFDAAPQTSPAFIDYSSYEPKVINSA------RQDSQDSNSLFPKERAVN----GDDEQV---EEQPEENISSDEFPFHKIVRILAPQQLTKPNV 108
            ECN ++    +P+TS +  +  S +P++  S+      R+ S    S+ P  R+V+         +   EE+P + +     P   +  IL    L+KP+V
Sbjct: 1020 ECNKVIKSTKSPETSASITNRISCQPRLATSSSPTYFERRSSSPLYSVSPHSRSVSPVPASHKRSISPSEEEPGKKLKLGGVPM--LQSILTQLPLSKPSV 1316
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BLAST of EMLSAG00000003498 vs. L. salmonis peptides
Match: EMLSAP00000003498 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1910:42262:46415:-1 gene:EMLSAG00000003498 transcript:EMLSAT00000003498 description:"augustus_masked-LSalAtl2s1910-processed-gene-0.0")

HSP 1 Score: 272.707 bits (696), Expect = 5.817e-95
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 
Query:    1 MIMEQRIRNTIGLFLVLFSAECNSIVLFDAAPQTSPAFIDYSSYEPKVINSARQDSQDSNSLFPKERAVNGDDEQVEEQPEENISSDEFPFHKIVRILAPQQLTKPNVVRRNYLRFGKKRSSPKKSSRIRKKRL 134
            MIMEQRIRNTIGLFLVLFSAECNSIVLFDAAPQTSPAFIDYSSYEPKVINSARQDSQDSNSLFPKERAVNGDDEQVEEQPEENISSDEFPFHKIVRILAPQQLTKPNVVRRNYLRFGKKRSSPKKSSRIRKKRL
Sbjct:    1 MIMEQRIRNTIGLFLVLFSAECNSIVLFDAAPQTSPAFIDYSSYEPKVINSARQDSQDSNSLFPKERAVNGDDEQVEEQPEENISSDEFPFHKIVRILAPQQLTKPNVVRRNYLRFGKKRSSPKKSSRIRKKRL 134
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003498 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003498 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592929237|gb|GAXK01029308.1|2.587e+027.38TSA: Calanus finmarchicus comp151802_c0_seq10 tran... [more]
gi|592921839|gb|GAXK01036536.1|9.254e+024.75TSA: Calanus finmarchicus comp591256_c1_seq1 trans... [more]
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BLAST of EMLSAG00000003498 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000034985.817e-95100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1910:4226... [more]
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BLAST of EMLSAG00000003498 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003498 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003498 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003498 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1910supercontigLSalAtl2s1910:42262..46415 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1910-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003498 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003498EMLSAT00000003498-699345Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1910:42262..46415-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003498-686264 ID=EMLSAG00000003498-686264|Name=EMLSAG00000003498|organism=Lepeophtheirus salmonis|type=gene|length=4154bp|location=Sequence derived from alignment at LSalAtl2s1910:42262..46415- (Lepeophtheirus salmonis)
ATGATAATGGAGCAACGGATTCGCAATACAATAGGTTTATTTCTCGTTCT
GTTCTCTGCAGAATGTAATTCAATAGTCTTGTTTGACGCGGCTCCACAAA
CATCCCCCGCTTTCATCGATTATTCATCCTATGAACCCAAAGTGATCAAC
AGTGCCAGACAGGATTCTCAAGATTCAAATTCACTCTTTCCTAAAGAAAG
AGCCGTCAATGGAGATGATGAACAAGTGGAGGAGCAGCCGGAAGAGAATA
TCAGCTCAGATGAATTCCCTTTTCATAAAATTGTGAGGATTTTAGCTCCA
CAACAACTCACAAAACCAAATGTTGTTCGGAGAAATTACCTTCGATTTGG
TAAAAAGAGATCATCTCCAAAAAAATCCTCCAGGATTAGAAAGAAGAGAT
TATAGGTATGAGCCATCATGCTAAGGTGTATATTATAAACTCAGGAGACA
ATGATTTTTGTCTAAAAAGTAGACTGATCAGCCGTTCAGCAGGAATAAAT
CCCTTTTCATAAAAATATATTTTTTCATACGCAAGATGCCACTTTTTATA
ATACTAGAGAGAACAGGTCTTTCGTCATTTTTGTCACTTTCTCTCATGAC
GTGTCCAACCTTTTCTTACCTTTGCATAATTCAACCTCTCAATTAAGTGA
AAGGGTGGATCTGTGGAGGTTGCAGAGTTAGTCATAGATTAATATAGAAG
TCAACTCGAGGCTCCCTGTCCTGCGTTAAAAAAACAATGACATAGACAAC
TATGTATATATTTGGAGAAATATAGATCGCATTGTCTCCGTTTTGCCACT
TGGGCTTAAAGCTTCAGTTGGTATCATTGATAAGTATAGATTGTTKGAGG
TAGCCGTTGTACCACGATTTTGTTGTCAACTGTTGCAGGAGGAACTTTTT
GACATACATTATCATATGATGGCGTTATCTGGCGAATACAGAAAGTCCCT
ATGTATTTTATTGTCAGCTGTTTATTCCCTAGTATCACTTGATACGTCGA
TGGCTATTTCATAATATATTCTTTTTGTGAAATAAACTAAATAATAGGTC
ATAATATACTTATACTCCAAATCCCAACNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTACAATTTTTTTGCTAATAATTATT
CTTTTTGTWWYCAACTYTTSATTTCTGGAATAATAAAATTCTCACAAATT
TAATTTAATTTTTTGAAGAAAAAAAATCCAAAAACCAAACCCTCTCTCAA
AAAATAATGTATAGATAGATCACTCTACGGACGCTTCTGATTATACAATT
CCATATACACTCAGATTGTTTTAATTTAAGAAATCCTTGCCAATCAAATA
GGAAGTTTTTCTTGACGTCATATATCCTATGTTTTGATAAGAGACAGCTA
CAAAAAAGATAATAATAGTCTTCATATTCTTTAGACTAAAATCATGAATC
ATGAGTATTTAAGAAAGTAAATTTATTAGGTCATGTACCTATGTATCAAG
ATTTATAGCTTTGTGTCCGATCGTCTGCGTACATACATACTTTTAATGAT
TTCTAAAATAAATACATATCTTGATGGTCAAGAAACCTACATTTTCATTG
TGATAACGCTGGAATATGATTGATATGATTTCCGTTTTATCATAAGCAAT
TAAATTATCCTTATTGGATATTGTCAATGTTCGATCCAGGATGATATATA
TTGTATTTTATTTCTTTTTTGAGTTCAAAGAGACTTTCGTACAAAAAATA
AATAGAAAAAACATTAATAGTACAAGGACAAAAATGGTTTATGTAATTTT
CCAGGTGCTAGAATTTTTTTGGTTTTCAAATGAAAAAATTTAACAGAAAA
ATTAATTTATTTTCTTAAAAATAAGAGGATTCAGATAAATTTTTGTAAAA
AGCTTTGAATTTGGATCCAAAAAATTTAATATATGAAATTAAATTTTCTG
TAAATAGTTAAATCAAAAAATTTATGTTTAAAATTTTTTGTGAATAGCTT
TAGAATTTACAAAAAAAAAGTAAATCTTTGGATTTTTTTTCTTTAAAATG
AAAAAAGACAAAAAATGTATATCTCTTTAGGCCTGTTTTTTAATATTTGT
CAGACACTAAAATGTATTTCAAATATGCCATTACATGGTTATACAATCAT
ATTTATATATAGTAGATACAAATTGACTATAACAGGTAGCGTTTTGTTAG
CACTTATTTAGGACTGTAGACTGTTGTCCCGCCACGTTCAGTCCTGTATA
TCAATTAGAGGTGAATTCGGTCTAGCCCAGCCCTTTGAACCTCATTTAGC
CAAGCCCAAAAGTACATGGCTCGAATCTTCCAGCCCAACCATTGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGAACAACCTTTCCTAAATAGATTCCATTATATTCAAGAACTTTTTGCAC
AATTATGAGATATATTTGTTAGTCCCTGTTGGACTCAGAGTAGAATTGGG
TACCGAAATCGGATTAATTCTAGCAAATTTAATTGTTTATATCCTTTTCT
CCTTCCTGTTTTGTAATAGCTGATTGTAACTGATCTAATGAAACGTCATG
AGTATTATTCTTTCTCTTCTCCAAAGCAGACTTAAAATTGGCAGGGTTAC
CATGTTGATTTTCGGTTTCTTTTTTTAATTTGTCCATTCTACACTGGGTT
TTCATCATTGATGAAAACATTCATTAAAGTAATGACGAAGCATTATGATG
ACATAAAACTAGACAAAAATGATTACGATGAATTAATTATAATCTCGTCC
ATGACATTAAATTAAAATATGACTTCTTAAGTATTTATTATCATTAAAAT
CCTATTTTCCTGATTGATTTCGTACCGATATTTGTTTAACTCCTGATGTT
AAATCAACAATCAATACTATAAATTTAAAAAAATAGGCATTTTTGTAATA
TTCGAAAAGTCAAAAACCATCCAAATAAGTTATAATAAGATTTTTTTAAA
CTAGAACTAATATTAAACTTCCATATTATAATATTGCTTTTTTAAATATT
TTATTTAAAGCGTCGCTATACATTTGTATTTCTGTACGATAGCCAAAATA
TCAGCTGTCAATAAAATAAATAGGGTATTTATTATTTACTAATTATGTGT
TAGCGAGGTAAAGGCGTCCGTACAATGGGAAAACAATCATTTTTCTAACC
AATCTAGAACAGTCAAGATCAGTCATGTACCAAATTGGTTTTCTTTCACA
AAAATAAATCACACTTTGTAACGTGTCCCGAATTCCTCCAAACCGAAATC
CAACACTAATACAAACTTCTATATTACAGGGAATTTGTTCGATTTGGCAA
ACGC
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