EMLSAG00000003619, EMLSAG00000003619-686385 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003619
Unique NameEMLSAG00000003619-686385
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003619 vs. C. finmarchicus
Match: gi|592822050|gb|GAXK01132518.1| (TSA: Calanus finmarchicus comp26393_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.9878 bits (123), Expect = 3.061e-6
Identity = 32/121 (26.45%), Postives = 68/121 (56.20%), Query Frame = 0 
Query:  344 AETQPEDVPELLVLAILEVYFAYHDMFPTQE-DFTKSVVKVISISITPSLMAPLLKKTEFSFAKDLLEFFDRILKEETEVEC----VFHWASLILDAHYLNFQLTRDQEGLEILNKMNETL 459
            A ++ ED+PE L+L  + +YF   D    +E D  + +  + S S++ ++M+  + +        L +  D ++ +  EVEC    +  W S+++ +HY+   ++RD++ L+++NK+ ET+
Sbjct: 1108 AISRLEDIPEQLLLDCI-IYFLDPDRTDLKEGDELRLLSILFSHSVSLAVMSEEVSRLSLEQVIKLCKVLDMLIHKPEEVECAEENLLEWVSMLITSHYMQLVVSRDKDTLDMVNKLQETV 1467
[Close]
BLAST of EMLSAG00000003619 vs. C. finmarchicus
Match: gi|592937744|gb|GAXK01020809.1| (TSA: Calanus finmarchicus comp12954_c39_seq7 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.694e+0
Identity = 28/104 (26.92%), Postives = 47/104 (45.19%), Query Frame = 0 
Query:  189 HSDKLLISSFDTNSEQTINLPPSYSLAGASIAPLG---SCHFVLTCKSPGDGYTLFLFNVSFGDPLILTHINVKTVTDPLKTSGNNIFIQHGPRVACVKANILP 289
              +K     + T  E  I+     ++ GA+   LG   S  F +T +SP  G   F++  S+G       I  +T+   +   G+N  +   PRVAC++  I+P
Sbjct:  696 EKEKFAGGDYTTTVEAYISAA-GRAIQGATSHHLGQNFSKMFDITFESPQTGEKEFVYQNSWG-------ITTRTIGVLVMVHGDNNGLVLPPRVACLQVVIVP 983
[Close]
BLAST of EMLSAG00000003619 vs. C. finmarchicus
Match: gi|592937745|gb|GAXK01020808.1| (TSA: Calanus finmarchicus comp12954_c39_seq6 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.774e+0
Identity = 28/104 (26.92%), Postives = 47/104 (45.19%), Query Frame = 0 
Query:  189 HSDKLLISSFDTNSEQTINLPPSYSLAGASIAPLG---SCHFVLTCKSPGDGYTLFLFNVSFGDPLILTHINVKTVTDPLKTSGNNIFIQHGPRVACVKANILP 289
              +K     + T  E  I+     ++ GA+   LG   S  F +T +SP  G   F++  S+G       I  +T+   +   G+N  +   PRVAC++  I+P
Sbjct:  696 EKEKFAGGDYTTTVEAYISAA-GRAIQGATSHHLGQNFSKMFDITFESPQTGEKEFVYQNSWG-------ITTRTIGVLVMVHGDNNGLVLPPRVACLQVVIVP 983
[Close]
BLAST of EMLSAG00000003619 vs. C. finmarchicus
Match: gi|592937749|gb|GAXK01020804.1| (TSA: Calanus finmarchicus comp12954_c39_seq2 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.817e+0
Identity = 28/104 (26.92%), Postives = 47/104 (45.19%), Query Frame = 0 
Query:  189 HSDKLLISSFDTNSEQTINLPPSYSLAGASIAPLG---SCHFVLTCKSPGDGYTLFLFNVSFGDPLILTHINVKTVTDPLKTSGNNIFIQHGPRVACVKANILP 289
              +K     + T  E  I+     ++ GA+   LG   S  F +T +SP  G   F++  S+G       I  +T+   +   G+N  +   PRVAC++  I+P
Sbjct:  696 EKEKFAGGDYTTTVEAYISAA-GRAIQGATSHHLGQNFSKMFDITFESPQTGEKEFVYQNSWG-------ITTRTIGVLVMVHGDNNGLVLPPRVACLQVVIVP 983
[Close]
BLAST of EMLSAG00000003619 vs. C. finmarchicus
Match: gi|592937750|gb|GAXK01020803.1| (TSA: Calanus finmarchicus comp12954_c39_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.832e+0
Identity = 28/104 (26.92%), Postives = 47/104 (45.19%), Query Frame = 0 
Query:  189 HSDKLLISSFDTNSEQTINLPPSYSLAGASIAPLG---SCHFVLTCKSPGDGYTLFLFNVSFGDPLILTHINVKTVTDPLKTSGNNIFIQHGPRVACVKANILP 289
              +K     + T  E  I+     ++ GA+   LG   S  F +T +SP  G   F++  S+G       I  +T+   +   G+N  +   PRVAC++  I+P
Sbjct:  696 EKEKFAGGDYTTTVEAYISAA-GRAIQGATSHHLGQNFSKMFDITFESPQTGEKEFVYQNSWG-------ITTRTIGVLVMVHGDNNGLVLPPRVACLQVVIVP 983
[Close]
BLAST of EMLSAG00000003619 vs. C. finmarchicus
Match: gi|592773503|gb|GAXK01181065.1| (TSA: Calanus finmarchicus comp4468220_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.745e+0
Identity = 15/48 (31.25%), Postives = 25/48 (52.08%), Query Frame = 0 
Query:  384 ISISITPSLMAPLLKKTEFSFAKDLLEFFDRILKEETEVECVFHWASL 431
            + + I P + A L K   F F++ +  FF     +  E EC+F WA++
Sbjct:   72 VFLQIIPLMEAFLTKLWRFCFSRIMCRFFLHFENKHVESECLFAWANV 215
[Close]
BLAST of EMLSAG00000003619 vs. C. finmarchicus
Match: gi|592937752|gb|GAXK01020801.1| (TSA: Calanus finmarchicus comp12954_c34_seq15 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 5.470e+0
Identity = 28/104 (26.92%), Postives = 47/104 (45.19%), Query Frame = 0 
Query:  189 HSDKLLISSFDTNSEQTINLPPSYSLAGASIAPLG---SCHFVLTCKSPGDGYTLFLFNVSFGDPLILTHINVKTVTDPLKTSGNNIFIQHGPRVACVKANILP 289
              +K     + T  E  I+     ++ GA+   LG   S  F +T +SP  G   F++  S+G       I  +T+   +   G+N  +   PRVAC++  I+P
Sbjct:    1 EKEKFAGGDYTTTVEAYIS-AAGRAIQGATSHHLGQNFSKMFDITFESPQTGEKEFVYQNSWG-------ITTRTIGVLVMVHGDNNGLVLPPRVACLQVVIVP 288
[Close]
BLAST of EMLSAG00000003619 vs. L. salmonis peptides
Match: EMLSAP00000003619 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1983:9671:11254:-1 gene:EMLSAG00000003619 transcript:EMLSAT00000003619 description:"maker-LSalAtl2s1983-snap-gene-0.9")

HSP 1 Score: 1032.71 bits (2669), Expect = 0.000e+0
Identity = 505/505 (100.00%), Postives = 505/505 (100.00%), Query Frame = 0 
Query:    1 MSLLSNPRFVNGIEGKLISAEDLDGKYLFLSSESTAWKYDQEEGVILETWFTKSFQKITQGLISCPDGSICLVLNDRRVLRWDGVDKNVTLDSLEPKLILNATPVDHFFNECQELFWVLSDGSLQSANKILFMYSQNTEVYAHFQAIFCDEDPDSPILHLKPRKGPKLIGSNINKSVYIPSQNQIILLHSDKLLISSFDTNSEQTINLPPSYSLAGASIAPLGSCHFVLTCKSPGDGYTLFLFNVSFGDPLILTHINVKTVTDPLKTSGNNIFIQHGPRVACVKANILPDSLAELIAIKDNVLETNDIMEFEPDSGEMNPMKLYELILPMLREGNVASIHKTLAETQPEDVPELLVLAILEVYFAYHDMFPTQEDFTKSVVKVISISITPSLMAPLLKKTEFSFAKDLLEFFDRILKEETEVECVFHWASLILDAHYLNFQLTRDQEGLEILNKMNETLGIYIMSEDVMLSTLPLMKLIGTKKMILPKDNFDRKNSSYFIDVIDI 505
            MSLLSNPRFVNGIEGKLISAEDLDGKYLFLSSESTAWKYDQEEGVILETWFTKSFQKITQGLISCPDGSICLVLNDRRVLRWDGVDKNVTLDSLEPKLILNATPVDHFFNECQELFWVLSDGSLQSANKILFMYSQNTEVYAHFQAIFCDEDPDSPILHLKPRKGPKLIGSNINKSVYIPSQNQIILLHSDKLLISSFDTNSEQTINLPPSYSLAGASIAPLGSCHFVLTCKSPGDGYTLFLFNVSFGDPLILTHINVKTVTDPLKTSGNNIFIQHGPRVACVKANILPDSLAELIAIKDNVLETNDIMEFEPDSGEMNPMKLYELILPMLREGNVASIHKTLAETQPEDVPELLVLAILEVYFAYHDMFPTQEDFTKSVVKVISISITPSLMAPLLKKTEFSFAKDLLEFFDRILKEETEVECVFHWASLILDAHYLNFQLTRDQEGLEILNKMNETLGIYIMSEDVMLSTLPLMKLIGTKKMILPKDNFDRKNSSYFIDVIDI
Sbjct:    1 MSLLSNPRFVNGIEGKLISAEDLDGKYLFLSSESTAWKYDQEEGVILETWFTKSFQKITQGLISCPDGSICLVLNDRRVLRWDGVDKNVTLDSLEPKLILNATPVDHFFNECQELFWVLSDGSLQSANKILFMYSQNTEVYAHFQAIFCDEDPDSPILHLKPRKGPKLIGSNINKSVYIPSQNQIILLHSDKLLISSFDTNSEQTINLPPSYSLAGASIAPLGSCHFVLTCKSPGDGYTLFLFNVSFGDPLILTHINVKTVTDPLKTSGNNIFIQHGPRVACVKANILPDSLAELIAIKDNVLETNDIMEFEPDSGEMNPMKLYELILPMLREGNVASIHKTLAETQPEDVPELLVLAILEVYFAYHDMFPTQEDFTKSVVKVISISITPSLMAPLLKKTEFSFAKDLLEFFDRILKEETEVECVFHWASLILDAHYLNFQLTRDQEGLEILNKMNETLGIYIMSEDVMLSTLPLMKLIGTKKMILPKDNFDRKNSSYFIDVIDI 505
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003619 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003619 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592822050|gb|GAXK01132518.1|3.061e-626.45TSA: Calanus finmarchicus comp26393_c0_seq1 transc... [more]
gi|592937744|gb|GAXK01020809.1|2.694e+026.92TSA: Calanus finmarchicus comp12954_c39_seq7 trans... [more]
gi|592937745|gb|GAXK01020808.1|2.774e+026.92TSA: Calanus finmarchicus comp12954_c39_seq6 trans... [more]
gi|592937749|gb|GAXK01020804.1|2.817e+026.92TSA: Calanus finmarchicus comp12954_c39_seq2 trans... [more]
gi|592937750|gb|GAXK01020803.1|2.832e+026.92TSA: Calanus finmarchicus comp12954_c39_seq1 trans... [more]
gi|592773503|gb|GAXK01181065.1|3.745e+031.25TSA: Calanus finmarchicus comp4468220_c0_seq1 tran... [more]
gi|592937752|gb|GAXK01020801.1|5.470e+026.92TSA: Calanus finmarchicus comp12954_c34_seq15 tran... [more]
back to top
BLAST of EMLSAG00000003619 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000036190.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1983:9671... [more]
back to top
BLAST of EMLSAG00000003619 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003619 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003619 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003619 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1983supercontigLSalAtl2s1983:9671..11254 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1983-snap-gene-0.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003619 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003619EMLSAT00000003619-699466Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1983:9671..11254-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003619-686385 ID=EMLSAG00000003619-686385|Name=EMLSAG00000003619|organism=Lepeophtheirus salmonis|type=gene|length=1584bp|location=Sequence derived from alignment at LSalAtl2s1983:9671..11254- (Lepeophtheirus salmonis)
ATGTCCCTGCTCAGCAATCCTAGGTTTGTGAATGGGATTGAAGGTAAACT
CATCTCTGCAGAGGATTTAGATGGGAAATATTTGTTTTTGAGTTCTGAAT
CAACGGCATGGAAGTACGATCAAGAAGAGGGTGTCATCCTTGAGACCTGG
TTCACTAAGTCTTTCCAAAAAATAACTCAGGGGTTAATCTCTTGTCCAGA
TGGATCTATTTGTTTGGTTCTCAATGATCGGCGCGTTCTTCGTTGGGATG
GGGTGGATAAAAACGTGACTCTCGATTCTTTGGAGCCCAAATTAATTTTG
AATGCTACACCCGTTGATCATTTCTTTAATGAGTGTCAAGAACTCTTTTG
GGTCCTTTCTGATGGAAGTCTTCAAAGTGAGGCTCATAAGGCCAAATCCT
TTTTGCCACCTAATTCCATAGTAATTAAAGTGTTCTATCTAGGTGCGAAC
AAAATCTTATTCATGTATAGCCAGAACACTGAAGTGTATGCACATTTTCA
AGCCATTTTTTGTGATGAAGATCCCGACTCTCCAATTCTTCACTTAAAGC
CAAGAAAAGGACCTAAATTGATTGGCTCCAACATTAATAAAAGTGTTTAT
ATTCCATCACAGAATCAAATAATTCTTCTTCACTCCGACAAACTACTCAT
ATCATCCTTTGACACCAATTCAGAGCAGACTATCAATTTACCTCCTAGCT
ATAGTTTGGCTGGAGCAAGCATTGCACCCCTTGGTTCTTGCCATTTCGTG
CTTACTTGTAAATCACCAGGAGATGGGTATACCCTGTTTTTATTCAATGT
CTCTTTTGGAGATCCTCTGATTCTAACGCACATTAACGTAAAAACTGTCA
CAGATCCCCTCAAGACATCTGGTAACAATATTTTCATACAACATGGTCCT
CGTGTAGCCTGTGTTAAGGCTAATATCCTCCCTGACTCCCTAGCTGAACT
AATTGCAATTAAAGATAATGTTTTAGAAACGAACGATATTATGGAATTCG
AACCGGACTCGGGAGAAATGAATCCAATGAAACTCTATGAGCTTATTCTT
CCCATGCTTCGTGAGGGTAACGTTGCATCAATTCATAAGACGCTTGCTGA
GACTCAACCTGAAGACGTTCCTGAATTGCTTGTTCTTGCCATTTTAGAAG
TTTATTTTGCCTATCATGATATGTTCCCTACCCAAGAAGACTTCACAAAA
TCGGTTGTCAAAGTAATTAGTATATCTATTACGCCCTCGCTTATGGCTCC
TCTCCTCAAGAAAACAGAGTTTTCTTTTGCAAAAGATCTCTTAGAGTTCT
TCGATAGGATTCTTAAGGAAGAAACGGAAGTGGAATGTGTATTTCACTGG
GCTTCTCTCATTCTTGATGCGCATTATTTAAATTTCCAACTTACGAGAGA
CCAGGAAGGATTAGAAATTCTAAATAAGATGAATGAGACTCTTGGTATTT
ACATCATGTCAGAAGATGTCATGCTTTCCACTCTACCACTCATGAAGCTA
ATAGGTACTAAGAAGATGATATTACCCAAAGACAATTTCGACAGAAAAAA
CTCCTCTTACTTTATAGATGTTATTGATATTTGA
back to top
Add to Basket