EMLSAG00000003805, EMLSAG00000003805-686571 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003805
Unique NameEMLSAG00000003805-686571
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003805 vs. C. finmarchicus
Match: gi|592920966|gb|GAXK01037409.1| (TSA: Calanus finmarchicus comp682396_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.462e+0
Identity = 18/56 (32.14%), Postives = 35/56 (62.50%), Query Frame = 0 
Query:   21 KYSRSYLLEKYEKSRSFI---EGESKVMISVSDSSTFGVESKDRFIRYLTFLFEQI 73
            K S+  LLEKYEK ++ I   E + + ++ V+++ T G E++D + + +  + +QI
Sbjct:  537 KRSQPSLLEKYEKVQNDIKEKEVQYRKLVKVAETITEG-ETRDSYTKRILDILKQI 701
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BLAST of EMLSAG00000003805 vs. C. finmarchicus
Match: gi|592920964|gb|GAXK01037411.1| (TSA: Calanus finmarchicus comp682396_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.784e+0
Identity = 18/56 (32.14%), Postives = 35/56 (62.50%), Query Frame = 0 
Query:   21 KYSRSYLLEKYEKSRSFI---EGESKVMISVSDSSTFGVESKDRFIRYLTFLFEQI 73
            K S+  LLEKYEK ++ I   E + + ++ V+++ T G E++D + + +  + +QI
Sbjct:  714 KRSQPSLLEKYEKVQNDIKEKEVQYRKLVKVAETITEG-ETRDSYTKRILDILKQI 878
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BLAST of EMLSAG00000003805 vs. C. finmarchicus
Match: gi|592920965|gb|GAXK01037410.1| (TSA: Calanus finmarchicus comp682396_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.856e+0
Identity = 18/56 (32.14%), Postives = 35/56 (62.50%), Query Frame = 0 
Query:   21 KYSRSYLLEKYEKSRSFI---EGESKVMISVSDSSTFGVESKDRFIRYLTFLFEQI 73
            K S+  LLEKYEK ++ I   E + + ++ V+++ T G E++D + + +  + +QI
Sbjct:  946 KRSQPSLLEKYEKVQNDIKEKEVQYRKLVKVAETITEG-ETRDSYTKRILDILKQI 1110
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BLAST of EMLSAG00000003805 vs. C. finmarchicus
Match: gi|592920967|gb|GAXK01037408.1| (TSA: Calanus finmarchicus comp682396_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.033e+0
Identity = 18/56 (32.14%), Postives = 35/56 (62.50%), Query Frame = 0 
Query:   21 KYSRSYLLEKYEKSRSFI---EGESKVMISVSDSSTFGVESKDRFIRYLTFLFEQI 73
            K S+  LLEKYEK ++ I   E + + ++ V+++ T G E++D + + +  + +QI
Sbjct:  714 KRSQPSLLEKYEKVQNDIKEKEVQYRKLVKVAETITEG-ETRDSYTKRILDILKQI 878
[Close]
BLAST of EMLSAG00000003805 vs. C. finmarchicus
Match: gi|592920968|gb|GAXK01037407.1| (TSA: Calanus finmarchicus comp682396_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.061e+0
Identity = 18/56 (32.14%), Postives = 35/56 (62.50%), Query Frame = 0 
Query:   21 KYSRSYLLEKYEKSRSFI---EGESKVMISVSDSSTFGVESKDRFIRYLTFLFEQI 73
            K S+  LLEKYEK ++ I   E + + ++ V+++ T G E++D + + +  + +QI
Sbjct:  946 KRSQPSLLEKYEKVQNDIKEKEVQYRKLVKVAETITEG-ETRDSYTKRILDILKQI 1110
[Close]
BLAST of EMLSAG00000003805 vs. L. salmonis peptides
Match: EMLSAP00000003805 (pep:novel supercontig:LSalAtl2s:LSalAtl2s206:258574:259308:-1 gene:EMLSAG00000003805 transcript:EMLSAT00000003805 description:"snap_masked-LSalAtl2s206-processed-gene-2.4")

HSP 1 Score: 143.665 bits (361), Expect = 5.611e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MIAIRGFFKNSKCVRSVALRKYSRSYLLEKYEKSRSFIEGESKVMISVSDSSTFGVESKDRFIRYLTFLFEQI 73
            MIAIRGFFKNSKCVRSVALRKYSRSYLLEKYEKSRSFIEGESKVMISVSDSSTFGVESKDRFIRYLTFLFEQI
Sbjct:    1 MIAIRGFFKNSKCVRSVALRKYSRSYLLEKYEKSRSFIEGESKVMISVSDSSTFGVESKDRFIRYLTFLFEQI 73
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003805 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003805 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592920966|gb|GAXK01037409.1|5.462e+032.14TSA: Calanus finmarchicus comp682396_c0_seq3 trans... [more]
gi|592920964|gb|GAXK01037411.1|5.784e+032.14TSA: Calanus finmarchicus comp682396_c0_seq5 trans... [more]
gi|592920965|gb|GAXK01037410.1|5.856e+032.14TSA: Calanus finmarchicus comp682396_c0_seq4 trans... [more]
gi|592920967|gb|GAXK01037408.1|6.033e+032.14TSA: Calanus finmarchicus comp682396_c0_seq2 trans... [more]
gi|592920968|gb|GAXK01037407.1|6.061e+032.14TSA: Calanus finmarchicus comp682396_c0_seq1 trans... [more]
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BLAST of EMLSAG00000003805 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000038055.611e-46100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s206:25857... [more]
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BLAST of EMLSAG00000003805 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003805 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003805 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003805 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s206supercontigLSalAtl2s206:258574..259308 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s206-processed-gene-2.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003805 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003805EMLSAT00000003805-699652Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s206:258574..259308-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003805-686571 ID=EMLSAG00000003805-686571|Name=EMLSAG00000003805|organism=Lepeophtheirus salmonis|type=gene|length=735bp|location=Sequence derived from alignment at LSalAtl2s206:258574..259308- (Lepeophtheirus salmonis)
ATGATTGCAATAAGGGGATTTTTCAAAAATTCCAAATGTGTTCGATCCGT
TGCGCTAAGAAAATATAGTCGTAGTTACTTATTGGAGAAATATGAAAAGT
CACGGAGTTTTATAGAGGGTGAGTCCAAAGTTATGATTTCAGTCTCGGAT
TCTTCTACATTTGGGGTTGAATCAAAGGACAGATTGTATATTACCTAGTA
TAAGAACCTCTGAGTAATCATACCAATAACTTGAATTAAAATGTTACTGA
TAGAAAATAGAATAAATATAATTTATAAATAGAATAAAATATTATTGCAT
ACTTTTTCAAAGAGAAGGAGATTAGAAAGAAATGCTCTTGAACTTGGGTT
GTAAAATTATTATAATCATATTGAAAAACATAATTAGTGAAGGTTTTTTG
AACACGAATGATTGATTTGTTCATTTATGCTCAGGATCATTATCATTATT
GACGTTATTATTCGTATAAATAGTAGACATTAACTAAGTACTGTATTAAA
GTTATATTTGATTAAAAGCGTAGTTATACTTTTAGGATGGTCTTTACATA
CTTATATTCTGTATGATAATCGATTATTATGGGTTAAAGGATCCTTAAAA
TTTCGTCAAAAAAGAATACGAGGGAGAACCAATAGATTAATACCCTAACT
ATCACCTTATAAAATTTGTATGATAAATTAATTTTTTCACCTTATCAGTA
TCCGTTATTTAACCTTTCTTTTTGAGCAGATATAA
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