EMLSAG00000003878, EMLSAG00000003878-686644 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003878
Unique NameEMLSAG00000003878-686644
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592944945|gb|GAXK01013608.1| (TSA: Calanus finmarchicus comp9690_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 108.997 bits (271), Expect = 6.453e-24
Identity = 110/460 (23.91%), Postives = 204/460 (44.35%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKCFDLNTVS-CQTVWEXXXXXXXXXXXXXXXXVSKECKMQNIRETDKVIKVPVSMIINQKVCWIIPEV----------KCLNKRFPCSQN----------------------CPMGDSCHSLQFQQPLSICPSSYNGKIPTTRYMXXXXXXXXXXXXEESICKPYSPNNNQKDFNNXXXXXXXXXXXXXXVPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGS---CQLIPRVICPNRKECKSGEACNICEHFRRN 493
            CYT +E+ C   ++  +CQ    + C    +  CR VR     +  +  C + P R+CF Y+++IC +       N++W+N++L   +   I++C  ++     Q V E +++      N T  +  +EC M   +  D+V++     +  Q+ C+ +P             C+N    CS N                       P G     LQ    +     S NG I                  +E+ C  Y P+++ +    QQCCR  ++++C+QVP R+  ++N  IPG++   + CK V   +       E   +NK+ + C+   K  CV   + T+++  + ++ Q+++R+  C+   +  E+CH FP+  + CR     + + L+K+ CD K+    C  +P   C    + GS   C+++PR  C ++  C +  AC  C+  R++
Sbjct:  570 CYTYYEQEC-KRVDRPRCQIESSEFCKSRSIPMCRVVRVPEQTSITLESCVKKPKRECFKYQREICNSYPETYMHNVTWQNDRLEETDVEEIEECKTVDACKIVQEVKEEERVVDKQVCNGTKTEQKQECTMVPSQTPDRVVQQTQYKVDYQQRCFNVPRQICESNSCTTQGCVNGGSVCSANDYTYQQRCATVVGAPMAPQNPCGPQGGPRGGLQGMPGMGNACGSQNGNI--------------CQEVKEAAC--YGPSSSCQ-APTQQCCRITQERVCQQVPVRVPVMVNITIPGQIVRNRDCKMVDVEVPFCEMVQETIKENKTYDKCEMEKKEHCVPFELPTFSVIKQDRAEQIDLRIKKCKKSVLEQEYCHVFPDAEVDCREKRETRRYILNKVVCDRKRDAKICRTIPWSRC----MTGSDQECKMVPRQRCVDK--CSTNPACGKCDQLRQD 1877
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592944949|gb|GAXK01013604.1| (TSA: Calanus finmarchicus comp9690_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 106.686 bits (265), Expect = 2.965e-23
Identity = 109/459 (23.75%), Postives = 203/459 (44.23%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKCFDLNTVS-CQTVWEXXXXXXXXXXXXXXXXVSKECKMQNIRETDKVIKVPVSMIINQKVCWIIPEV----------KCLNKRFPCSQN----------------------CPMGDSCHSLQFQQPLSICPSSYNGKIPTTRYMXXXXXXXXXXXXEESICKPYSPNNNQKDFNNXXXXXXXXXXXXXXVPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGS---CQLIPRVICPNRKECKSGEACNICEHFRR 492
            CYT +E+ C   ++  +CQ    + C    +  CR VR     +  +  C + P R+CF Y+++IC +       N++W+N++L   +   I++C  ++     Q V E +++      N T  +  +EC M   +  D+V++     +  Q+ C+ +P             C+N    CS N                       P G     LQ    +     S NG I                  +E+ C  Y P+++ +    QQCCR  ++++C+QVP R+  ++N  IPG++   + CK V   +       E   +NK+ + C+   K  CV   + T+++  + ++ Q+++R+  C+   +  E+CH FP+  + CR     + + L+K+ CD K+    C  +P   C    + GS   C+++P+  C ++  C +  AC  C+  R+
Sbjct:  579 CYTYYEQEC-KRVDRPRCQIESSEFCKSRSIPMCRVVRVPEQTSITLESCVKKPKRECFKYQREICNSYPETYMHNVTWQNDRLEETDVEEIEECKTVDACKIVQEVKEEERVVDKQVCNGTKTEQKQECTMVPSQTPDRVVQQTQYKVDYQQRCFNVPRQICESNSCTTQGCVNGGSVCSANDYTYQQRCATVVGAPMAPQNPCGPQGGPRGGLQGMPGMGNACGSQNGNI--------------CQEVKEAAC--YGPSSSCQ-APTQQCCRITQERVCQQVPVRVPVMVNITIPGQIVRNRDCKMVDVEVPFCEMVQETIKENKTYDKCEMEKKEHCVPFELPTFSVIKQDRAEQIDLRIKKCKKSVLEQEYCHVFPDAEVDCREKRETRRYILNKVVCDRKRDAKICRTIPWSRC----MTGSDQECKMVPKERCVDK--CSTNPACGKCDQLRQ 1883
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592860082|gb|GAXK01097480.1| (TSA: Calanus finmarchicus comp38976_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 102.834 bits (255), Expect = 7.240e-22
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 0 
Query:  320 VPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASD 511
            VP R+    N  IP  V++++ C++V +V       +E++   K+  +C   +  EC N T+ TY +E E KS  V+     C+++ V   +CHTFP  +  C+  TV + + L+K+ C  +K +  C I+P   C N      C+++P+ +C  +  C +   CN C+ FR   GF  C    C N+   D
Sbjct:  998 VPRRVPVRRNVTIP-DVTWEQQCRDVESVRQNCETNYEVENITKTEQICNDVMVEECYNYTVPTYKVEKEAKSENVSFVTQQCQFRNVTDRYCHTFPNADFNCQMRTVNRPYMLNKVVCKDRKPVKFCRIIPESECDN-VPDQQCRMVPKQVC--QPGCSNSNTCNKCDSFRNQGGFSSCSTGTCPNYFPED 1561

HSP 2 Score: 42.743 bits (99), Expect = 3.363e-3
Identity = 27/97 (27.84%), Postives = 46/97 (47.42%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISH--CAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKC 164
            CYT +E +C++ +   +C+  G++ C    +  CR   EK   N  I    C     ++CF + K +C  +     K + WEN+KL   ++    KC
Sbjct:  299 CYTYYENVCEN-VNQPRCRMKGREFCDEAVMPDCRI--EKTRGNMPIKQEVCTPKSRQECFEWTKTVCDMRPSSVYKEVEWENQKLEPVDSVNKTKC 580
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592860081|gb|GAXK01097481.1| (TSA: Calanus finmarchicus comp38976_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 102.834 bits (255), Expect = 7.505e-22
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 0 
Query:  320 VPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASD 511
            VP R+    N  IP  V++++ C++V +V       +E++   K+  +C   +  EC N T+ TY +E E KS  V+     C+++ V   +CHTFP  +  C+  TV + + L+K+ C  +K +  C I+P   C N      C+++P+ +C  +  C +   CN C+ FR   GF  C    C N+   D
Sbjct:  980 VPRRVPVRRNVTIP-DVTWEQQCRDVESVRQNCETNYEVENITKTEQICNDVMVEECYNYTVPTYKVEKEAKSENVSFVTQQCQFRNVTDRYCHTFPNADFNCQMRTVNRPYMLNKVVCKDRKPVKFCRIIPESECDN-VPDQQCRMVPKQVC--QPGCSNSNTCNKCDSFRNQGGFSSCSTGTCPNYFPED 1543

HSP 2 Score: 42.743 bits (99), Expect = 3.474e-3
Identity = 27/97 (27.84%), Postives = 46/97 (47.42%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISH--CAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKC 164
            CYT +E +C++ +   +C+  G++ C    +  CR   EK   N  I    C     ++CF + K +C  +     K + WEN+KL   ++    KC
Sbjct:  281 CYTYYENVCEN-VNQPRCRMKGREFCDEAVMPDCRI--EKTRGNMPIKQEVCTPKSRQECFEWTKTVCDMRPSSVYKEVEWENQKLEPVDSVNKTKC 562
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592860084|gb|GAXK01097478.1| (TSA: Calanus finmarchicus comp38976_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 102.449 bits (254), Expect = 7.794e-22
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 0 
Query:  320 VPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASD 511
            VP R+    N  IP  V++++ C++V +V       +E++   K+  +C   +  EC N T+ TY +E E KS  V+     C+++ V   +CHTFP  +  C+  TV + + L+K+ C  +K +  C I+P   C N      C+++P+ +C  +  C +   CN C+ FR   GF  C    C N+   D
Sbjct:  998 VPRRVPVRRNVTIP-DVTWEQQCRDVESVRQNCETNYEVENITKTEQICNDVMVEECYNYTVPTYKVEKEAKSENVSFVTQQCQFRNVTDRYCHTFPNADFNCQMRTVNRPYMLNKVVCKDRKPVKFCRIIPESECDN-VPDQQCRMVPKQVC--QPGCSNSNTCNKCDSFRNQGGFSSCSTGTCPNYFPED 1561

HSP 2 Score: 43.1282 bits (100), Expect = 2.867e-3
Identity = 27/97 (27.84%), Postives = 46/97 (47.42%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISH--CAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKC 164
            CYT +E +C++ +   +C+  G++ C    +  CR   EK   N  I    C     ++CF + K +C  +     K + WEN+KL   ++    KC
Sbjct:  299 CYTYYENVCEN-VNQPRCRMKGREFCDEAVMPDCRI--EKTRGNMPIKQEVCTPKSRQECFEWTKTVCDMRPSSVYKEVEWENQKLEPVDSVNKTKC 580
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592860083|gb|GAXK01097479.1| (TSA: Calanus finmarchicus comp38976_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 102.449 bits (254), Expect = 7.942e-22
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 0 
Query:  320 VPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASD 511
            VP R+    N  IP  V++++ C++V +V       +E++   K+  +C   +  EC N T+ TY +E E KS  V+     C+++ V   +CHTFP  +  C+  TV + + L+K+ C  +K +  C I+P   C N      C+++P+ +C  +  C +   CN C+ FR   GF  C    C N+   D
Sbjct:  980 VPRRVPVRRNVTIP-DVTWEQQCRDVESVRQNCETNYEVENITKTEQICNDVMVEECYNYTVPTYKVEKEAKSENVSFVTQQCQFRNVTDRYCHTFPNADFNCQMRTVNRPYMLNKVVCKDRKPVKFCRIIPESECDN-VPDQQCRMVPKQVC--QPGCSNSNTCNKCDSFRNQGGFSSCSTGTCPNYFPED 1543

HSP 2 Score: 43.1282 bits (100), Expect = 3.065e-3
Identity = 27/97 (27.84%), Postives = 46/97 (47.42%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISH--CAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKC 164
            CYT +E +C++ +   +C+  G++ C    +  CR   EK   N  I    C     ++CF + K +C  +     K + WEN+KL   ++    KC
Sbjct:  281 CYTYYENVCEN-VNQPRCRMKGREFCDEAVMPDCRI--EKTRGNMPIKQEVCTPKSRQECFEWTKTVCDMRPSSVYKEVEWENQKLEPVDSVNKTKC 562
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592860085|gb|GAXK01097477.1| (TSA: Calanus finmarchicus comp38976_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 102.449 bits (254), Expect = 8.474e-22
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 0 
Query:  320 VPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASD 511
            VP R+    N  IP  V++++ C++V +V       +E++   K+  +C   +  EC N T+ TY +E E KS  V+     C+++ V   +CHTFP  +  C+  TV + + L+K+ C  +K +  C I+P   C N      C+++P+ +C  +  C +   CN C+ FR   GF  C    C N+   D
Sbjct:  980 VPRRVPVRRNVTIP-DVTWEQQCRDVESVRQNCETNYEVENITKTEQICNDVMVEECYNYTVPTYKVEKEAKSENVSFVTQQCQFRNVTDRYCHTFPNADFNCQMRTVNRPYMLNKVVCKDRKPVKFCRIIPESECDN-VPDQQCRMVPKQVC--QPGCSNSNTCNKCDSFRNQGGFSSCSTGTCPNYFPED 1543

HSP 2 Score: 43.1282 bits (100), Expect = 3.181e-3
Identity = 27/97 (27.84%), Postives = 46/97 (47.42%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISH--CAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKC 164
            CYT +E +C++ +   +C+  G++ C    +  CR   EK   N  I    C     ++CF + K +C  +     K + WEN+KL   ++    KC
Sbjct:  281 CYTYYENVCEN-VNQPRCRMKGREFCDEAVMPDCRI--EKTRGNMPIKQEVCTPKSRQECFEWTKTVCDMRPSSVYKEVEWENQKLEPVDSVNKTKC 562
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592860086|gb|GAXK01097476.1| (TSA: Calanus finmarchicus comp38976_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 102.449 bits (254), Expect = 9.153e-22
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 0 
Query:  320 VPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASD 511
            VP R+    N  IP  V++++ C++V +V       +E++   K+  +C   +  EC N T+ TY +E E KS  V+     C+++ V   +CHTFP  +  C+  TV + + L+K+ C  +K +  C I+P   C N      C+++P+ +C  +  C +   CN C+ FR   GF  C    C N+   D
Sbjct:  998 VPRRVPVRRNVTIP-DVTWEQQCRDVESVRQNCETNYEVENITKTEQICNDVMVEECYNYTVPTYKVEKEAKSENVSFVTQQCQFRNVTDRYCHTFPNADFNCQMRTVNRPYMLNKVVCKDRKPVKFCRIIPESECDN-VPDQQCRMVPKQVC--QPGCSNSNTCNKCDSFRNQGGFSSCSTGTCPNYFPED 1561

HSP 2 Score: 43.1282 bits (100), Expect = 3.106e-3
Identity = 27/97 (27.84%), Postives = 46/97 (47.42%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISH--CAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKC 164
            CYT +E +C++ +   +C+  G++ C    +  CR   EK   N  I    C     ++CF + K +C  +     K + WEN+KL   ++    KC
Sbjct:  299 CYTYYENVCEN-VNQPRCRMKGREFCDEAVMPDCRI--EKTRGNMPIKQEVCTPKSRQECFEWTKTVCDMRPSSVYKEVEWENQKLEPVDSVNKTKC 580
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592944946|gb|GAXK01013607.1| (TSA: Calanus finmarchicus comp9690_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 83.5741 bits (205), Expect = 6.161e-16
Identity = 47/177 (26.55%), Postives = 90/177 (50.85%), Query Frame = 0 
Query:  320 VPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGS---CQLIPRVICPNRKECKSGEACNICEHFRRN 493
            VP R+  ++N  IPG++   + CK V   +       E   +NK+ + C+   K  CV   + T+++  + ++ Q+++R+  C+   +  E+CH FP+  + CR     + + L+K+ CD K+    C  +P   C    + GS   C+++PR  C ++  C +  AC  C+  R++
Sbjct:  570 VPVRVPVMVNITIPGQIVRNRDCKMVDVEVPFCEMVQETIKENKTYDKCEMEKKEHCVPFELPTFSVIKQDRAEQIDLRIKKCKKSVLEQEYCHVFPDAEVDCREKRETRRYILNKVVCDRKRDAKICRTIPWSRC----MTGSDQECKMVPRQRCVDK--CSTNPACGKCDQLRQD 1082

HSP 2 Score: 48.9062 bits (115), Expect = 3.907e-5
Identity = 30/108 (27.78%), Postives = 56/108 (51.85%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKCFDLNTVSCQTVWE 177
            CYT +E+ C   ++  +CQ    + C    +  CR VR     +  +  C + P R+CF Y+++IC +       N++W+N++L   N   I++C  ++  +C+ V E
Sbjct: 1563 CYTYYEQECKR-VDRPRCQIESSEFCKSRSIPMCRVVRVPEQTSITLESCVKKPKRECFKYQREICNSYPETYMHNVTWQNDRLEETNVEEIEECKTVD--ACKIVPE 1877
[Close]
BLAST of EMLSAG00000003878 vs. C. finmarchicus
Match: gi|592944950|gb|GAXK01013603.1| (TSA: Calanus finmarchicus comp9690_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 81.6481 bits (200), Expect = 2.424e-15
Identity = 46/176 (26.14%), Postives = 89/176 (50.57%), Query Frame = 0 
Query:  320 VPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGS---CQLIPRVICPNRKECKSGEACNICEHFRR 492
            VP R+  ++N  IPG++   + CK V   +       E   +NK+ + C+   K  CV   + T+++  + ++ Q+++R+  C+   +  E+CH FP+  + CR     + + L+K+ CD K+    C  +P   C    + GS   C+++P+  C ++  C +  AC  C+  R+
Sbjct:  579 VPVRVPVMVNITIPGQIVRNRDCKMVDVEVPFCEMVQETIKENKTYDKCEMEKKEHCVPFELPTFSVIKQDRAEQIDLRIKKCKKSVLEQEYCHVFPDAEVDCREKRETRRYILNKVVCDRKRDAKICRTIPWSRC----MTGSDQECKMVPKERCVDK--CSTNPACGKCDQLRQ 1088

HSP 2 Score: 48.9062 bits (115), Expect = 4.263e-5
Identity = 30/108 (27.78%), Postives = 56/108 (51.85%), Query Frame = 0 
Query:   70 CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKCFDLNTVSCQTVWE 177
            CYT +E+ C   ++  +CQ    + C    +  CR VR     +  +  C + P R+CF Y+++IC +       N++W+N++L   N   I++C  ++  +C+ V E
Sbjct: 1569 CYTYYEQECKR-VDRPRCQIESSEFCKSRSIPMCRVVRVPEQTSITLESCVKKPKRECFKYQREICNSYPETYMHNVTWQNDRLEETNVEEIEECKTVD--ACKIVPE 1883
[Close]
BLAST of EMLSAG00000003878 vs. L. salmonis peptides
Match: EMLSAP00000003878 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2108:805:3601:1 gene:EMLSAG00000003878 transcript:EMLSAT00000003878 description:"maker-LSalAtl2s2108-augustus-gene-0.4")

HSP 1 Score: 1190.64 bits (3079), Expect = 0.000e+0
Identity = 606/606 (100.00%), Postives = 606/606 (100.00%), Query Frame = 0 
Query:    1 MNYKSVSYFHYNIKDIAMCNSRIYSINFFFCIVLTITQRPIPAEFTDNVCSIQNKCCNMAKNNCCTQGNCYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKCFDLNTVSCQTVWEIKKIPIPVKKNKTIPKVSKECKMQNIRETDKVIKVPVSMIINQKVCWIIPEVKCLNKRFPCSQNCPMGDSCHSLQFQQPLSICPSSYNGKIPTTRYMNNNCININPPICEESICKPYSPNNNQKDFNNQQCCRQKKKKICRQVPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASDNWKDEKNANNFYRRFHNSFPSDYYQSKPWDYNKNIPSFQKTKTNQPMIASKYFTGNIEGPSVHNVIVTEDSDLFMDKXXXXXXXXXXXXXVIKHT 606
            MNYKSVSYFHYNIKDIAMCNSRIYSINFFFCIVLTITQRPIPAEFTDNVCSIQNKCCNMAKNNCCTQGNCYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKCFDLNTVSCQTVWEIKKIPIPVKKNKTIPKVSKECKMQNIRETDKVIKVPVSMIINQKVCWIIPEVKCLNKRFPCSQNCPMGDSCHSLQFQQPLSICPSSYNGKIPTTRYMNNNCININPPICEESICKPYSPNNNQKDFNNQQCCRQKKKKICRQVPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASDNWKDEKNANNFYRRFHNSFPSDYYQSKPWDYNKNIPSFQKTKTNQPMIASKYFTGNIEGPSVHNVIVTEDSDLFMDKXXXXXXXXXXXXXVIKHT
Sbjct:    1 MNYKSVSYFHYNIKDIAMCNSRIYSINFFFCIVLTITQRPIPAEFTDNVCSIQNKCCNMAKNNCCTQGNCYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKCFDLNTVSCQTVWEIKKIPIPVKKNKTIPKVSKECKMQNIRETDKVIKVPVSMIINQKVCWIIPEVKCLNKRFPCSQNCPMGDSCHSLQFQQPLSICPSSYNGKIPTTRYMNNNCININPPICEESICKPYSPNNNQKDFNNQQCCRQKKKKICRQVPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHFRRNIGFHKCQFNKCSNFVASDNWKDEKNANNFYRRFHNSFPSDYYQSKPWDYNKNIPSFQKTKTNQPMIASKYFTGNIEGPSVHNVIVTEDSDLFMDKXXXXXXXXXXXXXVIKHT 606
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BLAST of EMLSAG00000003878 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1054_size66621-snap-gene-0.11 (protein:Tk00478 transcript:maker-scaffold1054_size66621-snap-gene-0.11-mRNA-1 annotation:"spt transcription factor family member")

HSP 1 Score: 246.128 bits (627), Expect = 3.606e-73
Identity = 146/468 (31.20%), Postives = 242/468 (51.71%), Query Frame = 0 
Query:   50 CSIQNKCCNMAKNNCCTQGN-CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVLDNATAIKKCFDLNTVSCQTVWEIKKIPIPVKKNKTIPKVSKECKMQNIRETDKVIKVPVSMIINQKVCWIIPEVKCLNKRFPCSQN-CPMGDS-CHSLQFQQPLSICPSSYNGKIPTTRYMNNNCININPPICEESICKPYSPNNNQKDFNNQQCCRQKKKKICRQVPTRITKLMNKVIPGRVSYKKTCKNVINVITKYYWGHEMKIQNKSRNVCKPSLKNECVNITIRTYNIEYETKSNQVNIRLPVCEYKEVNSEFCHTFPEGNIICRNATVPKSFNLHKIKCDVKKQMNQCAIVPIVNCKNETLAGSCQLIPRVICPNRKECKSGEACNICEHF-RRNIGFHKCQFNKCSNFVASDNW 513
            C + N+CC MA   CC  G  CYTV+ER C+   ++ +C    +KVC    + SCR V E +  +++ S C+  P++KC+ Y+KK+C        KNI W N+KL +      + C +  +  C+    ++     VK+ + +P   ++C    +      I VPVS I+ ++ C+ +P  +C      C    C  G S C   QF    ++CPS+  G +   +  N NC  +  P+C  S        N   +  +QQCC  + +++CRQVP RIT+ +++ IPG+VSY   C+++    T+ Y+    ++ NK++N C    K +C N+TI  Y +     S  + ++LP C ++ V+ +FCHTFP G I CR  T+ K F ++KIKCD   Q   C   P ++C+  +    C+++P+ +C  + +C +   CN C  F ++  GF  C  + C   V ++ W
Sbjct:   77 CQMTNQCCGMANEKCCVGGERCYTVFERKCEQE-DNPECAMSFEKVCSDATMPSCRLVPEVVTEDFVASVCSPRPMKKCWTYEKKVCAPDTKPGVKNIQWANDKLAVYEQDEKQHCVNQTSYKCEDKVVLETTTNQVKRQRVLPDSRRQCTRVPVMGNSSTIVVPVSRIVYRQQCYDMPVPQCSTSA--CGTGFCGQGTSVCSRSQFNT-QTVCPSA-PGAMGGMQGSNQNCQTVREPLCYGS--------NQPCNAGSQQCCNSESQRVCRQVPQRITEQVSQTIPGQVSYNTVCQDIAFNRTEIYYEPVQQVFNKTKNDCMQIQKRQCFNMTIPKYRVTQVPNSESITVQLPNCRHRLVSDQFCHTFPTGEIECRKTTIRKRFRINKIKCDQLTQTPICQQFPKMDCRLGSRV-KCEMVPKKVC--QDKCSNSPLCNQCNQFVQQGPGFGSCASSTCGTLVPNNPW 528
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BLAST of EMLSAG00000003878 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1054_size66621-snap-gene-0.12 (protein:Tk00477 transcript:maker-scaffold1054_size66621-snap-gene-0.12-mRNA-1 annotation:"---NA---")

HSP 1 Score: 85.1149 bits (209), Expect = 3.341e-19
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:   50 CSIQNKCCNMAKNNCCTQGN-CYTVWERICDSAIEDHQCQTVGKKVCIPMEVNSCRTVREKIFRNYIISHCAQSPLRKCFNYKKKICIAKEIVSTKNISWENEKLVL 155
            C + N+CC MA   CC  G  CYTV+ER C+   ++ +C    +KVC    + SCR V E +  +++ S C+  P++KC+ Y+KK+C        KNI W N+KL +
Sbjct:   77 CQMTNQCCGMANEKCCVGGERCYTVFERKCEQE-DNPECAMSFEKVCSDATMPSCRLVPEVVTEDFVASVCSPRPMKKCWTYEKKVCAPDTKPGVKNIQWANDKLAV 182
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003878 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003878 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592944945|gb|GAXK01013608.1|6.453e-2423.91TSA: Calanus finmarchicus comp9690_c0_seq7 transcr... [more]
gi|592944949|gb|GAXK01013604.1|2.965e-2323.75TSA: Calanus finmarchicus comp9690_c0_seq3 transcr... [more]
gi|592860082|gb|GAXK01097480.1|7.240e-2230.21TSA: Calanus finmarchicus comp38976_c1_seq5 transc... [more]
gi|592860081|gb|GAXK01097481.1|7.505e-2230.21TSA: Calanus finmarchicus comp38976_c1_seq6 transc... [more]
gi|592860084|gb|GAXK01097478.1|7.794e-2230.21TSA: Calanus finmarchicus comp38976_c1_seq3 transc... [more]
gi|592860083|gb|GAXK01097479.1|7.942e-2230.21TSA: Calanus finmarchicus comp38976_c1_seq4 transc... [more]
gi|592860085|gb|GAXK01097477.1|8.474e-2230.21TSA: Calanus finmarchicus comp38976_c1_seq2 transc... [more]
gi|592860086|gb|GAXK01097476.1|9.153e-2230.21TSA: Calanus finmarchicus comp38976_c1_seq1 transc... [more]
gi|592944946|gb|GAXK01013607.1|6.161e-1626.55TSA: Calanus finmarchicus comp9690_c0_seq6 transcr... [more]
gi|592944950|gb|GAXK01013603.1|2.424e-1526.14TSA: Calanus finmarchicus comp9690_c0_seq2 transcr... [more]

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BLAST of EMLSAG00000003878 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000038780.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2108:805:... [more]
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BLAST of EMLSAG00000003878 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003878 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003878 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003878 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold1054_size66621-snap-gene-0.113.606e-7331.20protein:Tk00478 transcript:maker-scaffold1054_size... [more]
maker-scaffold1054_size66621-snap-gene-0.123.341e-1938.32protein:Tk00477 transcript:maker-scaffold1054_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2108supercontigLSalAtl2s2108:805..3601 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s2108-augustus-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003878 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003878EMLSAT00000003878-699725Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2108:805..3601+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003878-686644 ID=EMLSAG00000003878-686644|Name=EMLSAG00000003878|organism=Lepeophtheirus salmonis|type=gene|length=2797bp|location=Sequence derived from alignment at LSalAtl2s2108:805..3601+ (Lepeophtheirus salmonis)
GCAGCACATTAACATTAGAGCAAATCTTTGAATGAATTACAAGTCAGTTA
GTTATTTTCATTATAATATAAAAGATATTGCGATGTGTAACTCGAGAATT
TATTCGATAAATTTTTTTTTCTGTGTGAGTTCTATCTATTTATAATGATG
GATTGTACTGAACATTCAAAAATCAAACTAGTTAGATTAATATATATTTT
AAGTATATAATTGAATTTAAATTTATTATTTGAATATTTTGTTTTTACAA
TTTAAAATGATATTACTATTTCCATTTATTATAATATACATATTAAAAAT
ATGCATAAAATCTATAATGTATTTACTATAATTTACATACTTCATTTCTT
GGAAATTGTTATGCAATCCAAAATATTAAACTTAATAAGATTAAATGTAA
TTAATATTATTTCCAAGACATTTTTCTGTTTTAATTAAACACTAACATCC
TAAGCACTATCATATTTAAGTCTATTGAATGGATGACATGAGAAAAGAAA
TGTATCAAAAGGCTCCAAATCGAGAGAGTTTAGGATAATGTGTTCTAATA
AATATAATCAGCTAATACCTGATAAGTATTTAGAAATAATATACTCTAAA
TCATGTACTCTATTTAAACCAATTTAAATCCAGATCGTCTTAACCATTAC
TCAAAGACCAATTCCAGCAGAATTCACTGATAATGTTTGTTCTATTCAAA
ATAAATGTTGTAATATGGCGAAAAATAATTGTTGTACTCAAGGAAATTGC
TATACAGTTTGGGAAAGGATTTGTGACTCAGCCATAGAAGATCATCAATG
TCAAACAGTAGGTAAAAAAGTTTGTATACCAATGGAAGTCAACTCGTGTC
GTACAGTTAGAGAAAAAATATTTAGGAATTATATAATATCCCACTGTGCT
CAGTCTCCTCTGCGCAAATGCTTTAATTATAAAAAAAAAATTTGTATAGC
AAAGGAAATCGTATCTACTAAAAATATAAGTTGGGAAAATGAAAAACTCG
TCCTGGATAATGCAACAGCGATAAAAAAATGTTTTGATCTCAATACTGTG
AGTTGTCAAACTGTTTGGGAAATTAAAAAAATACCAATACCAGTTAAAAA
AAATAAGACTATTCCAAAAGTTTCCAAGGAATGTAAAATGCAAAATATTC
GTGAGACAGATAAAGTCATAAAAGTTCCCGTGTCCATGATAATTAATCAG
AAAGTTTGTTGGATAATTCCCGAAGTTAAATGTCTCAATAAAAGATTTCC
TTGTTCACAAAATTGTCCCATGGGCGATTCGTGTCATTCTCTACAATTTC
AGCAACCTTTGTCAATATGTCCTTCATCATACAATGGAAAAATTCCTACA
ACAAGATATATGAATAACAATTGTATAAACATAAATCCCCCTATATGTGA
AGAAAGTATATGCAAACCATACTCACCAAATAATAATCAAAAAGACTTCA
ATAACCAGGTAAAGATAATGACATATTATCTTAAAGAAAATTACATTTAT
GTTATAAGTTAATGATCAAATTTTTTCATCTGATATTTTATTAAATATCT
TTAAACACTAACAAAGAATTATAATTTATTTTTTTAGCAATGCTGCCGTC
AAAAAAAAAAAAAAATATGCCGTCAAGTGCCGACAAGAATTACTAAATTA
ATGAACAAAGTAATACCAGGAAGAGTAAGCTATAAAAAAACTTGTAAAAA
TGTTATAAATGTGATAACCAAATATTATTGGGGCCATGAAATGAAAATTC
AAAACAAAAGCAGGAACGTTTGTAAACCTTCACGTATGTGCTATAAATGA
TGTTTTTGTATTTTTATACTAACAATCAGGTTATTTTTTTTTATAGTAAA
GAATGAATGTGTTAATATTACTATTAGAACCTATAACATTGAGTATGAAA
CAAAAAGCAATCAAGTCAACATTCGTTTACCAGTCTGTGAATACAAAGAA
GTAAATTCTGAATTCTGTCATACGTTCCCAGAAGGTAATATAATATGTCG
TAATGCAACGGTTCCAAAAAGTTTTAATCTACATAAAATAAAATGTGATG
TAAAGAAACAAATGAATCAATGTGCAATAGTTCCTATTGTCAACTGCAAA
AATGAAACCTTGGCTGGTTCTTGTCAGTTAATTCCAAGAGTGATTTGTCC
AAACAGAAAAGAATGCAAGTCAGGAGAAGCATGCAATATATGTGAACATT
TTAGAAGAAATATTGGATTTCACAAATGTCAGTTCAATAAATGCTCAAAT
TTTGTAGCATCTGATAATTGGAAGGATGAAAAGAATGCAAATAATTTCTA
TAGACGATTTCATAACTCTTTTCCTTCTGATTATTATCAATCAAAGCCTT
GGGACTATAACAAAAATATACCTTCCTTTCAAAAGACCAAAACCAATCAA
CCAATGATAGCTTCGAAGTATTTTACAGGAAATATTGAAGGCCCTAGTGT
GCATAATGTCATAGTAACTGAAGACTCTGATTTATTTATGGATAAATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCATCAAACATACA
TGAATAAGAATTTTGACATTAACTTCAACATTGATAAAAATTGACATATT
AAGATAATAATAAATATTGATATATCAAGGAAATGGACACTCGATGGTTG
CAGATAGTATTTCATCATACAAATATATATATATATTTTTAATATCAACA
AAAATTATATATTTTTTTTAACAATTTTTGATAAAAACAACAATGATTAA
AAGTAATATTGTAAACTTATAATTATTAACTCATCAAATTATGTTTG
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