EMLSAG00000003894, EMLSAG00000003894-686660 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592841432|gb|GAXK01116112.1| (TSA: Calanus finmarchicus comp169077_c3_seq3 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 1.460e+0 Identity = 15/57 (26.32%), Postives = 28/57 (49.12%), Query Frame = 0 Query: 228 QIQQHISSTPILNSNNAT-----NSPVRVKRKIVCSECGMAMIGSNFGRHWASKHSH 279 Q+ S+ P+ +N+ ++P+ +K +C +CGM + N RH +HS Sbjct: 102 QVNTESSNEPVAANNHEEEHERGSNPIAAAKKQMCRQCGMQVTKKNLQRHLRIRHSQ 272
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592920653|gb|GAXK01037722.1| (TSA: Calanus finmarchicus comp1912922_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 1.770e+0 Identity = 28/93 (30.11%), Postives = 43/93 (46.24%), Query Frame = 0 Query: 244 ATNSPVRV-KRKIVCSECGMAM---------IGSNFGRHWASKHSHLPQPALQDLVYADSAESGEAETVVCEPLFFGTEDLSEDENDNIHEDG 326 +T++ VR KRK+V M + N G S L ++QD+ ++ + G+A T +ED++EDENDNI ED Sbjct: 247 STSTSVRSEKRKMVRRSATMTSQRLRRSSISLARNIGSGLYSLKETLMTSSMQDI--SEGSNLGQASTFYVS----DSEDMTEDENDNIIEDN 507
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592841424|gb|GAXK01116120.1| (TSA: Calanus finmarchicus comp169077_c6_seq3 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.961e+0 Identity = 15/57 (26.32%), Postives = 28/57 (49.12%), Query Frame = 0 Query: 228 QIQQHISSTPILNSNNAT-----NSPVRVKRKIVCSECGMAMIGSNFGRHWASKHSH 279 Q+ S+ P+ +N+ ++P+ +K +C +CGM + N RH +HS Sbjct: 170 QVNTESSNEPVAANNHEEEHERGSNPIAAAKKQMCRQCGMQVTKKNLQRHLRIRHSQ 340
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592841433|gb|GAXK01116111.1| (TSA: Calanus finmarchicus comp169077_c3_seq2 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 2.058e+0 Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 0 Query: 247 SPVRVKRKIVCSECGMAMIGSNFGRHWASKHSH 279 +P+ +K +C +CGM + N RH +HS Sbjct: 102 NPIAAAKKQMCRQCGMQVTKKNLQRHLRIRHSQ 200
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592841425|gb|GAXK01116119.1| (TSA: Calanus finmarchicus comp169077_c6_seq2 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.194e+0 Identity = 15/57 (26.32%), Postives = 28/57 (49.12%), Query Frame = 0 Query: 228 QIQQHISSTPILNSNNAT-----NSPVRVKRKIVCSECGMAMIGSNFGRHWASKHSH 279 Q+ S+ P+ +N+ ++P+ +K +C +CGM + N RH +HS Sbjct: 236 QVNTESSNEPVAANNHEEEHERGSNPIAAAKKQMCRQCGMQVTKKNLQRHLRIRHSQ 406
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592855202|gb|GAXK01102342.1| (TSA: Calanus finmarchicus comp1865176_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.955e+0 Identity = 35/137 (25.55%), Postives = 55/137 (40.15%), Query Frame = 0 Query: 239 LNSNNATNSPVRVKRKIVCSECGMAMIGSNF-GRHWASKH--------SHLPQPALQDLVYADSAESGEAETVVCEPLFFGTEDLSEDENDNIHEDGGPVMEHLLLQ--------SFQCGYERCSFSSSDKVSLYHH 358 LNS+ N +RV CS C F +H KH SH + Y++ + + + T++ ++++ + +DG E LL+ FQC ERC+FS+ K SL HH Sbjct: 178 LNSHKKANHEMRV---FSCSICETKTKFKQFLQKHMREKHDGKTVYFCSHCDFSSEIKQEYSNHKTYEMKKQKKLKSITDATKENNDNDTEQASKDGSTTTEVFLLEPKIENILKQFQC--ERCNFSTETKGSLTHH 573
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592855201|gb|GAXK01102343.1| (TSA: Calanus finmarchicus comp1865176_c0_seq2 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 3.594e+0 Identity = 35/137 (25.55%), Postives = 55/137 (40.15%), Query Frame = 0 Query: 239 LNSNNATNSPVRVKRKIVCSECGMAMIGSNF-GRHWASKH--------SHLPQPALQDLVYADSAESGEAETVVCEPLFFGTEDLSEDENDNIHEDGGPVMEHLLLQ--------SFQCGYERCSFSSSDKVSLYHH 358 LNS+ N +RV CS C F +H KH SH + Y++ + + + T++ ++++ + +DG E LL+ FQC ERC+FS+ K SL HH Sbjct: 178 LNSHKKANHEMRV---FSCSICETKTKFKQFLQKHMREKHDGKTVYFCSHCDFSSEIKQEYSNHKTYEMKKQKKLKSITDATKENNDNDTEQASKDGSTTTEVFLLEPKIENILKQFQC--ERCNFSTETKGSLTHH 573
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592895390|gb|GAXK01062985.1| (TSA: Calanus finmarchicus comp542744_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 3.882e+0 Identity = 40/164 (24.39%), Postives = 60/164 (36.59%), Query Frame = 0 Query: 253 RKIVCSECGMAMI-GSNFGRHWASKHSHLPQPALQDLVYADSAESGEAETVVCEPLFFGTEDLSEDENDNIHEDGGPVMEHLLLQSFQCGYERCSFSSSDKVSLYHHRSKC---GHFKNNGIQSSKPPHTXXXXXXXXXXXCPECDLQTITSN-FSRHWMXKHG 411 +K C C + S+ RH SKH P + + E+ E C ++L E N+ ED + C Y C F+S+ K + HH K H++ + I P C +C+ + SN RHW+ KHG Sbjct: 145 QKFYCCHCSLIFTRNSSLSRHTQSKHEGRKCPCGK----CNVLENLEISNSKC-----NAQNLETAELQNVKED-----------IYLCYY--CDFASNKKAKVKHHMGKMHSESHYEKSEIGGLFP--------------CDQCNYEATQSNHLKRHWISKHG 528
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592940446|gb|GAXK01018107.1| (TSA: Calanus finmarchicus comp32276_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 5.390e+0 Identity = 15/37 (40.54%), Postives = 23/37 (62.16%), Query Frame = 0 Query: 65 CHR-PLIGSNFGRHWASKHPHITQPSLINLEMEALSG 100 CH+ PL + H+++ HPHI+Q SL + E+ LS Sbjct: 176 CHQVPLHLYHLYLHFSTSHPHISQESLFSFEIPLLSS 286
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Match: gi|592887099|gb|GAXK01071276.1| (TSA: Calanus finmarchicus comp1564417_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 6.437e+0 Identity = 18/54 (33.33%), Postives = 29/54 (53.70%), Query Frame = 0 Query: 103 EDLAPPXPLSITSSPKPTVKKRKVVCRECEMPMINSNFSRHWASRHPHLDMPLL 156 E+ P P+ ITSS K ++ CRE ++P++ S+ W S P D+ +L Sbjct: 1397 EEWVNPAPIGITSSTKTSIWSFAFRCREMDLPVVTSS----WLSSEP*TDVIIL 1546
BLAST of EMLSAG00000003894 vs. L. salmonis peptides
Match: EMLSAP00000003894 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:445414:449855:1 gene:EMLSAG00000003894 transcript:EMLSAT00000003894 description:"maker-LSalAtl2s210-snap-gene-4.18") HSP 1 Score: 1231.47 bits (3185), Expect = 0.000e+0 Identity = 604/604 (100.00%), Postives = 604/604 (100.00%), Query Frame = 0 Query: 1 MPQPPIESLTVVRGDNTSETGDVIWPHILKPPPPEPIKTQPTPHLRVDGKERKRARQRNYICPECHRPLIGSNFGRHWASKHPHITQPSLINLEMEALSGGEEDLAPPXPLSITSSPKPTVKKRKVVCRECEMPMINSNFSRHWASRHPHLDMPLLSELEVIDVEVDASPPLKKPHKNPVIHQSHMPITIPYPSDDGDGDHLVQDIEPADEEFEDLEEIEDEDEDVMQIQQHISSTPILNSNNATNSPVRVKRKIVCSECGMAMIGSNFGRHWASKHSHLPQPALQDLVYADSAESGEAETVVCEPLFFGTEDLSEDENDNIHEDGGPVMEHLLLQSFQCGYERCSFSSSDKVSLYHHRSKCGHFKNNGIQSSKPPHTKVKKVWKKKVVCPECDLQTITSNFSRHWMXKHGHLPTPGLRDLQVITIDDPGFQGNVSSVEAEEIVVDPTIAGMNHIYEDDGEIQDDYEEFDYPEDQIIDCVQEDEDNDDGEEVVHAYHGGSVGVIEDEDEDNIHNSSNNNSSHNSSREDFGAEGGVVIDEDDIEEVDHDDDDDDPNDIDDEDNTPIKYSNNKINCNFDINSLLEDDDDDGDDQDESGEFASVEVK 604 MPQPPIESLTVVRGDNTSETGDVIWPHILKPPPPEPIKTQPTPHLRVDGKERKRARQRNYICPECHRPLIGSNFGRHWASKHPHITQPSLINLEMEALSGGEEDLAPPXPLSITSSPKPTVKKRKVVCRECEMPMINSNFSRHWASRHPHLDMPLLSELEVIDVEVDASPPLKKPHKNPVIHQSHMPITIPYPSDDGDGDHLVQDIEPADEEFEDLEEIEDEDEDVMQIQQHISSTPILNSNNATNSPVRVKRKIVCSECGMAMIGSNFGRHWASKHSHLPQPALQDLVYADSAESGEAETVVCEPLFFGTEDLSEDENDNIHEDGGPVMEHLLLQSFQCGYERCSFSSSDKVSLYHHRSKCGHFKNNGIQSSKPPHTKVKKVWKKKVVCPECDLQTITSNFSRHWMXKHGHLPTPGLRDLQVITIDDPGFQGNVSSVEAEEIVVDPTIAGMNHIYEDDGEIQDDYEEFDYPEDQIIDCVQEDEDNDDGEEVVHAYHGGSVGVIEDEDEDNIHNSSNNNSSHNSSREDFGAEGGVVIDEDDIEEVDHDDDDDDPNDIDDEDNTPIKYSNNKINCNFDINSLLEDDDDDGDDQDESGEFASVEVK Sbjct: 1 MPQPPIESLTVVRGDNTSETGDVIWPHILKPPPPEPIKTQPTPHLRVDGKERKRARQRNYICPECHRPLIGSNFGRHWASKHPHITQPSLINLEMEALSGGEEDLAPPXPLSITSSPKPTVKKRKVVCRECEMPMINSNFSRHWASRHPHLDMPLLSELEVIDVEVDASPPLKKPHKNPVIHQSHMPITIPYPSDDGDGDHLVQDIEPADEEFEDLEEIEDEDEDVMQIQQHISSTPILNSNNATNSPVRVKRKIVCSECGMAMIGSNFGRHWASKHSHLPQPALQDLVYADSAESGEAETVVCEPLFFGTEDLSEDENDNIHEDGGPVMEHLLLQSFQCGYERCSFSSSDKVSLYHHRSKCGHFKNNGIQSSKPPHTKVKKVWKKKVVCPECDLQTITSNFSRHWMXKHGHLPTPGLRDLQVITIDDPGFQGNVSSVEAEEIVVDPTIAGMNHIYEDDGEIQDDYEEFDYPEDQIIDCVQEDEDNDDGEEVVHAYHGGSVGVIEDEDEDNIHNSSNNNSSHNSSREDFGAEGGVVIDEDDIEEVDHDDDDDDPNDIDDEDNTPIKYSNNKINCNFDINSLLEDDDDDGDDQDESGEFASVEVK 604
BLAST of EMLSAG00000003894 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold11_size778918-snap-gene-6.41 (protein:Tk03679 transcript:maker-scaffold11_size778918-snap-gene-6.41-mRNA-1 annotation:"histone-lysine n- h3 lysine-36 and h4 lysine-20 specific") HSP 1 Score: 78.5666 bits (192), Expect = 3.008e-15 Identity = 92/358 (25.70%), Postives = 142/358 (39.66%), Query Frame = 0 Query: 48 DGKERKRARQRNYICPE--CHRPLIGSNFGRHWASKHPHITQPSLINLEME--ALSGGEED--LAPPXPLS----ITSSPKPTVKKRKVVC--RECEMPMINSNFSRHWASRHPHLDMPLLSELEVIDVEVDASPPLKKPHK---------NPVIHQSH---MPITIPYPSDDGDGDHLVQDIEPADEEFEDLEEIEDEDEDVMQIQQHISSTPILNSNNATNSPVRVKRKIVCSECGMAMIGSNFGRHWASKHSHLPQPAL---QDLVYADSAESG--EAETVVCEPLFFGTEDLSEDENDNIHEDGGPVMEHLLLQSFQCGYERCSFSSSDKVSLYHHRSKCGHFK---NNGIQSS 373 D + KR ++R ICPE C + SN GRH ++HP + + + + + + +G D + P P + S K + K+R VC EC + SN SRH S+HP D ++ V D E+ L+ + + H T Y +L + I+ E ED + SS P + V+VK C C + + SNF RHWA +H P P + + L D E + + EP+F+G + S N DG + F+C + C F +S++ L HR GH K NN +++S Sbjct: 1685 DYAKGKRIKERLKICPESNCQLIMRASNIGRHIKTRHPKMDESMALTAQYDESSFNGDSNDQIIVDPVPSPSQDILNGSLKNSGKERLKVCPIEECATKLRASNMSRHIKSKHPDFDES-IAATAVFDPELSMDDSLQMDNSFNDTDLFEGDEATHDKFGKERLFTCKYCGVSLRASNLRRHIKARHER-------EDGQNPIYLSPSDGSSHPAF---GLSGRRVQVK----CPACDLVLRPSNFNRHWARRHPAQPLPNVNERRQLYLEDDGEGFNEDGMAISVEPVFYGEGESSLPFNMEDESDGDESLNGDGKDGFECHFGTCHFVASNRRELAVHRRTLGHPKPGLNNSVRAS 2027 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003894 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003894 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 13
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BLAST of EMLSAG00000003894 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003894 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003894 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003894 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003894 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s210:445414..449855+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003894-686660 ID=EMLSAG00000003894-686660|Name=EMLSAG00000003894|organism=Lepeophtheirus salmonis|type=gene|length=4442bp|location=Sequence derived from alignment at LSalAtl2s210:445414..449855+ (Lepeophtheirus salmonis)back to top Add to Basket
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