EMLSAG00000003923, EMLSAG00000003923-686689 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003923
Unique NameEMLSAG00000003923-686689
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003923 vs. C. finmarchicus
Match: gi|592824260|gb|GAXK01130308.1| (TSA: Calanus finmarchicus comp70901_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 8.321e+0
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 0 
Query:   19 SHLPREWRCLAEEDEG 34
            S  P+ W CLA EDEG
Sbjct:  240 STAPKTWLCLAGEDEG 287
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BLAST of EMLSAG00000003923 vs. C. finmarchicus
Match: gi|592880482|gb|GAXK01077419.1| (TSA: Calanus finmarchicus comp427958_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 8.779e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:    7 ESMEHPENEENLSHLPREWRCLAEEDE 33
            E+    E E++  H+PREW   +EE E
Sbjct:  884 ETFTEAEMEDSEEHVPREWGDASEEPE 964
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BLAST of EMLSAG00000003923 vs. C. finmarchicus
Match: gi|592880483|gb|GAXK01077418.1| (TSA: Calanus finmarchicus comp427958_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 8.791e+0
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:    7 ESMEHPENEENLSHLPREWRCLAEEDE 33
            E+    E E++  H+PREW   +EE E
Sbjct:  901 ETFTEAEMEDSEEHVPREWGDASEEPE 981
[Close]
BLAST of EMLSAG00000003923 vs. C. finmarchicus
Match: gi|592824263|gb|GAXK01130305.1| (TSA: Calanus finmarchicus comp70901_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 8.911e+0
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 0 
Query:   19 SHLPREWRCLAEEDEG 34
            S  P+ W CLA EDEG
Sbjct:  240 STAPKTWLCLAGEDEG 287
[Close]
BLAST of EMLSAG00000003923 vs. C. finmarchicus
Match: gi|592824264|gb|GAXK01130304.1| (TSA: Calanus finmarchicus comp70901_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 8.992e+0
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 0 
Query:   19 SHLPREWRCLAEEDEG 34
            S  P+ W CLA EDEG
Sbjct:  240 STAPKTWLCLAGEDEG 287
[Close]
BLAST of EMLSAG00000003923 vs. L. salmonis peptides
Match: EMLSAP00000003923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s211:1251944:1252879:-1 gene:EMLSAG00000003923 transcript:EMLSAT00000003923 description:"maker-LSalAtl2s211-snap-gene-12.17")

HSP 1 Score: 70.4774 bits (171), Expect = 1.587e-18
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 
Query:    1 MKNSPYESMEHPENEENLSHLPREWRCLAEEDEG 34
            MKNSPYESMEHPENEENLSHLPREWRCLAEEDEG
Sbjct:    1 MKNSPYESMEHPENEENLSHLPREWRCLAEEDEG 34
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003923 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003923 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592824260|gb|GAXK01130308.1|8.321e+062.50TSA: Calanus finmarchicus comp70901_c0_seq5 transc... [more]
gi|592880482|gb|GAXK01077419.1|8.779e+040.74TSA: Calanus finmarchicus comp427958_c2_seq2 trans... [more]
gi|592880483|gb|GAXK01077418.1|8.791e+040.74TSA: Calanus finmarchicus comp427958_c2_seq1 trans... [more]
gi|592824263|gb|GAXK01130305.1|8.911e+062.50TSA: Calanus finmarchicus comp70901_c0_seq2 transc... [more]
gi|592824264|gb|GAXK01130304.1|8.992e+062.50TSA: Calanus finmarchicus comp70901_c0_seq1 transc... [more]
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BLAST of EMLSAG00000003923 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000039231.587e-18100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s211:12519... [more]
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BLAST of EMLSAG00000003923 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003923 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003923 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003923 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s211supercontigLSalAtl2s211:1251944..1252879 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s211-snap-gene-12.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003923 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003923EMLSAT00000003923-699770Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s211:1251944..1252879-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003923-686689 ID=EMLSAG00000003923-686689|Name=EMLSAG00000003923|organism=Lepeophtheirus salmonis|type=gene|length=936bp|location=Sequence derived from alignment at LSalAtl2s211:1251944..1252879- (Lepeophtheirus salmonis)
AAAGCAAAAGAAGAAGGAACACTCTGTAGTAGTATATGTACAGCTGTGGA
TCAAGTCGCCGAGATCAACAACGGAGCAATGAAGAATTCCCCGTATGAGA
GTATGGAGCATCCTGAAAATGAAGAAAACTTATCGCATCTCCCAAGAGAA
TGGAGGTAATACTTAATAGTGTATATCAGTATGTATATGTACTCATATAA
ATAAGTCAGGAACATTCTTAATCTTATCTCTTCGTATTGATATAAGTATA
ACTAAGAATATTTATGATATTTGCTTAAGAAAATTGAAAAAAGATATGAT
AAATTGGGAAGAAAGAGTCGTATTTATTAACTCGAGTAGTAGTACAATCA
TATTATGTCAATGCGCATATAGTTGGCTTAGAGTAGAGAGTCTGAATATA
GCCCTAAATCCAGTTTTTCCCTTTTTTTTCACTCACTGGAAAATTCCAAT
TTGTATGATAACCATTAGGTTATTTGTAATTTTGTAGTAGTTAAATTGAC
AACTGATTTAATATATGTACATAGTTGTACYAGGCAGTATTTAGGTATCA
AAGTAACTAGTAATATCTTCTTCTTCCTGAAGAATAAGAAGAGGAGGAAG
AAGAAGTATGTAGAAGAAGGTAAGYAAAAAACAGGCGAAGGAGTTACTAA
CATACATACTTAGAGAGAGCAGATACGCCTCCTCACTCCCTCGCTGCTTC
CCGTCCTTTGCTCTTCTGGTGATGATGACTTGAGAGACTTGATCGCAGTA
GTAGCTGCTTAAAMCACCTCATATTTCATGTATTCCCTATACTCTTTTCG
ACACTCTAGCTCACCCATTTAAATCCTAATCCTACTTTTTGCATCTACAT
ACATATTCATCAATCTAAAAATCATAATATTGAATTGTATTTGTTTTTGC
TCTTGAAGGTGTTTAGCGGAAGAGGATGAAGGATGA
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