EMLSAG00000004033, EMLSAG00000004033-686799 (gene) Lepeophtheirus salmonis
|
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Match: gi|592920604|gb|GAXK01037771.1| (TSA: Calanus finmarchicus comp396959_c0_seq1 transcribed RNA sequence) HSP 1 Score: 83.5741 bits (205), Expect = 4.686e-19 Identity = 44/140 (31.43%), Postives = 83/140 (59.29%), Query Frame = 0
Query: 37 EYLGRYQFYRGWSNKRRLLIVSGKDSELHEVRKS-SSYGYRCEMAVRNMNLVLLGEKLSQEIFFFHNEDTHGNYISTRELTHKLRQDIRNHLEYLYDLREGKFWAILVGYDGGLKISFEEVPNFWILFDRVDKTRTRQVE 175
+Y+ +Y++ R W+NKRR+++V G D+ + EV+++ + G C+++ RN+N++ L Q++ F+ + T +S RE ++ D+R R WA+LVGYDGG+K+ EE + +F+++D+ R+ E
Sbjct: 88 QYMSQYEYTRSWNNKRRVVVVQG-DNMVEEVKEAVQADGMNCQLSTRNINIIYLSGDQPQDVAFYLDRGTEVTDLS-REDVEDVKSDVR---------RGSGEWAVLVGYDGGVKMVMEEKVEWEKVFNKIDRMPMRRRE 474
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Match: gi|592840382|gb|GAXK01117162.1| (TSA: Calanus finmarchicus comp302360_c1_seq3 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 7.136e-1 Identity = 23/72 (31.94%), Postives = 29/72 (40.28%), Query Frame = 0
Query: 22 VSSGVEGIVSAPSAQEYLGRYQFY-------------------------RGWSNKRRLLIVSGKDSELHEVR 68
V S G V P +Q Y GR +F +GW N+ +LL SGKD E H+VR
Sbjct: 584 VYSCFLGAVKTPESQSYFGRPEFLYFQVFIMILQIANMIFLGITINTLLQGWKNQAQLLKESGKDKE-HDVR 796
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Match: gi|592840381|gb|GAXK01117163.1| (TSA: Calanus finmarchicus comp302360_c1_seq4 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 7.552e-1 Identity = 23/72 (31.94%), Postives = 29/72 (40.28%), Query Frame = 0
Query: 22 VSSGVEGIVSAPSAQEYLGRYQFY-------------------------RGWSNKRRLLIVSGKDSELHEVR 68
V S G V P +Q Y GR +F +GW N+ +LL SGKD E H+VR
Sbjct: 584 VYSCFLGAVKTPESQSYFGRPEFLYFQVFIMILQIANMIFLGITINTLLQGWKNQAQLLKESGKDKE-HDVR 796
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Match: gi|592840383|gb|GAXK01117161.1| (TSA: Calanus finmarchicus comp302360_c1_seq2 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 7.723e-1 Identity = 23/72 (31.94%), Postives = 29/72 (40.28%), Query Frame = 0
Query: 22 VSSGVEGIVSAPSAQEYLGRYQFY-------------------------RGWSNKRRLLIVSGKDSELHEVR 68
V S G V P +Q Y GR +F +GW N+ +LL SGKD E H+VR
Sbjct: 673 VYSCFLGAVKTPESQSYFGRPEFLYFQVFIMILQIANMIFLGITINTLLQGWKNQAQLLKESGKDKE-HDVR 885
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Match: gi|592840384|gb|GAXK01117160.1| (TSA: Calanus finmarchicus comp302360_c1_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 7.766e-1 Identity = 23/72 (31.94%), Postives = 29/72 (40.28%), Query Frame = 0
Query: 22 VSSGVEGIVSAPSAQEYLGRYQFY-------------------------RGWSNKRRLLIVSGKDSELHEVR 68
V S G V P +Q Y GR +F +GW N+ +LL SGKD E H+VR
Sbjct: 673 VYSCFLGAVKTPESQSYFGRPEFLYFQVFIMILQIANMIFLGITINTLLQGWKNQAQLLKESGKDKE-HDVR 885
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Match: gi|592840379|gb|GAXK01117165.1| (TSA: Calanus finmarchicus comp302360_c1_seq6 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 9.265e-1 Identity = 23/72 (31.94%), Postives = 29/72 (40.28%), Query Frame = 0
Query: 22 VSSGVEGIVSAPSAQEYLGRYQFY-------------------------RGWSNKRRLLIVSGKDSELHEVR 68
V S G V P +Q Y GR +F +GW N+ +LL SGKD E H+VR
Sbjct: 584 VYSCFLGAVKTPESQSYFGRPEFLYFQVFIMILQIANMIFLGITINTLLQGWKNQAQLLKESGKDKE-HDVR 796
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Match: gi|592840380|gb|GAXK01117164.1| (TSA: Calanus finmarchicus comp302360_c1_seq5 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 9.606e-1 Identity = 21/66 (31.82%), Postives = 27/66 (40.91%), Query Frame = 0
Query: 28 GIVSAPSAQEYLGRYQFY-------------------------RGWSNKRRLLIVSGKDSELHEVR 68
G V P +Q Y GR +F +GW N+ +LL SGKD E H+VR
Sbjct: 673 GAVKTPESQSYFGRPEFLYFQVFIMILQIANMIFLGITINTLLQGWKNQAQLLKESGKDKE-HDVR 867
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Match: gi|592849843|gb|GAXK01107701.1| (TSA: Calanus finmarchicus comp889645_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.045e+0 Identity = 19/67 (28.36%), Postives = 26/67 (38.81%), Query Frame = 0
Query: 22 VSSGVEGIVSAPSAQEYLGRYQF-------------------------YRGWSNKRRLLIVSGKDSE 63
+ S + G V PS Q Y GR +F Y+GW N+ L ++GKD E
Sbjct: 382 IYSCLLGAVKTPSHQNYFGRPEFLYFQIFILIIQIMNITFLGITINSLYKGWQNQAHLHKITGKDQE 582
BLAST of EMLSAG00000004033 vs. L. salmonis peptides
Match: EMLSAP00000004033 (pep:novel supercontig:LSalAtl2s:LSalAtl2s215:47921:67456:1 gene:EMLSAG00000004033 transcript:EMLSAT00000004033 description:"maker-LSalAtl2s215-augustus-gene-0.9") HSP 1 Score: 390.193 bits (1001), Expect = 1.939e-139 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query: 1 MERSSSSVMMIACFLFMITLIVSSGVEGIVSAPSAQEYLGRYQFYRGWSNKRRLLIVSGKDSELHEVRKSSSYGYRCEMAVRNMNLVLLGEKLSQEIFFFHNEDTHGNYISTRELTHKLRQDIRNHLEYLYDLREGKFWAILVGYDGGLKISFEEVPNFWILFDRVDKTRTRQVEAMKQERDRISCSH 188
MERSSSSVMMIACFLFMITLIVSSGVEGIVSAPSAQEYLGRYQFYRGWSNKRRLLIVSGKDSELHEVRKSSSYGYRCEMAVRNMNLVLLGEKLSQEIFFFHNEDTHGNYISTRELTHKLRQDIRNHLEYLYDLREGKFWAILVGYDGGLKISFEEVPNFWILFDRVDKTRTRQVEAMKQERDRISCSH
Sbjct: 1 MERSSSSVMMIACFLFMITLIVSSGVEGIVSAPSAQEYLGRYQFYRGWSNKRRLLIVSGKDSELHEVRKSSSYGYRCEMAVRNMNLVLLGEKLSQEIFFFHNEDTHGNYISTRELTHKLRQDIRNHLEYLYDLREGKFWAILVGYDGGLKISFEEVPNFWILFDRVDKTRTRQVEAMKQERDRISCSH 188
BLAST of EMLSAG00000004033 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold69_size418775-snap-gene-3.21 (protein:Tk03261 transcript:maker-scaffold69_size418775-snap-gene-3.21-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 141.354 bits (355), Expect = 1.319e-42 Identity = 70/177 (39.55%), Postives = 109/177 (61.58%), Query Frame = 0
Query: 13 CFLFMITLIVSSGVE--GIVSAPSAQEYLGRYQFYRGWSNKRRLLIVSGKDSELHEVRKSSSYGYRCEMAVRNMNLVLLGEKLSQEIFFFHNEDTHGNYISTRELTHKLRQDIRNHLEYLY-DLREGKFWAILVGYDGGLKISFEEVPNFWILFDRVDKTRTRQVEAMKQERDRISC 186
C L +I V + + IV+APSAQEYLG+YQ++R W +KRRL++V G D +L ++ K + Y YRCE+A+RN+N++ LG E F+H+ED +++ T +L+ LR+ + + LY DL W +L+GYDGG K + +V F +FD++D R+ E Q + I+C
Sbjct: 47 CGLPLILAFVPANLAQGAIVTAPSAQEYLGQYQYFRTWKDKRRLIVVRGSDKDLADMIKDAIYQYRCELAIRNINIIALGTSQGTETIFYHSEDNRRDFVQTNQLSDDLREMLHGYFNSLYRDLPLHSHWCLLLGYDGGRKRMYRKV-KFVSIFDKIDGMPMRRREMEDQRKKLINC 222 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004033 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004033 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 8
BLAST of EMLSAG00000004033 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000004033 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004033 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004033 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004033 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s215:47921..67456+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004033-686799 ID=EMLSAG00000004033-686799|Name=EMLSAG00000004033|organism=Lepeophtheirus salmonis|type=gene|length=19536bp|location=Sequence derived from alignment at LSalAtl2s215:47921..67456+ (Lepeophtheirus salmonis)back to top Add to Basket
|