EMLSAG00000004049, EMLSAG00000004049-686815 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592888813|gb|GAXK01069562.1| (TSA: Calanus finmarchicus comp313904_c1_seq4 transcribed RNA sequence) HSP 1 Score: 53.1434 bits (126), Expect = 2.017e-8 Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 0 Query: 45 LTENTRDTWKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQFKKGPQNV 91 E D WKCPDPGCK N S + C C LP++SA+QFK+G + Sbjct: 71 FNEGRSDHWKCPDPGCKTSNPFSQQTCSNCNLPKHSANQFKRGESKI 211
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592888816|gb|GAXK01069559.1| (TSA: Calanus finmarchicus comp313904_c1_seq1 transcribed RNA sequence) HSP 1 Score: 53.1434 bits (126), Expect = 3.799e-8 Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 0 Query: 45 LTENTRDTWKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQFKKGPQNV 91 E D WKCPDPGCK N S + C C LP++SA+QFK+G + Sbjct: 71 FNEGRSDHWKCPDPGCKTSNPFSQQTCSNCNLPKHSANQFKRGESKI 211
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592902121|gb|GAXK01056254.1| (TSA: Calanus finmarchicus comp429587_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 4.422e-4 Identity = 19/62 (30.65%), Postives = 31/62 (50.00%), Query Frame = 0 Query: 29 TVANIQGIESSTASGDLTENTR-----DTWKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQFK 85 T+++ G +G++ + + D W C DPGCKK+N +S C QC + A + K Sbjct: 103 TISSTTGAGQEKRAGEVNKEEKGRKGKDMWLCVDPGCKKMNSRSDSSCQQCGMSAKMAKELK 288
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592879079|gb|GAXK01078822.1| (TSA: Calanus finmarchicus comp489187_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 6.914e-4 Identity = 17/33 (51.52%), Postives = 19/33 (57.58%), Query Frame = 0 Query: 44 DLTENTRDTWKCPDPGCKKVNIKSAKCCIQCQL 76 D +DTW C DPGCKK N KS C QC + Sbjct: 177 DTGRKGKDTWLCVDPGCKKRNSKSDNSCQQCGM 275
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592851130|gb|GAXK01106414.1| (TSA: Calanus finmarchicus comp119468_c2_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 2.104e-2 Identity = 13/32 (40.62%), Postives = 21/32 (65.62%), Query Frame = 0 Query: 53 WKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQF 84 WKCPDPGCK++N + C +C + +A+ + Sbjct: 2830 WKCPDPGCKQLNGANRSNCTKCGIAYKAANDY 2925
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592846074|gb|GAXK01111470.1| (TSA: Calanus finmarchicus comp53803_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 3.588e-2 Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 0 Query: 53 WKCPDPGCKKVNIKSAKCCIQCQLPRN 79 W C DP C+K+N CIQC+L + Sbjct: 107 WTCADPTCRKMNFDERDACIQCRLKKR 187
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592769846|gb|GAXK01184722.1| (TSA: Calanus finmarchicus comp5879379_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 1.989e+0 Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 0 Query: 51 DTWKCPDPGCKKVNIKSAKCCIQCQLPRNS 80 +TW C PGC N + C C+ PR+S Sbjct: 211 NTWWCKIPGCNTTNWYPMEACRSCRHPRDS 300
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592937965|gb|GAXK01020588.1| (TSA: Calanus finmarchicus comp13595_c1_seq1 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 4.254e+0 Identity = 17/62 (27.42%), Postives = 26/62 (41.94%), Query Frame = 0 Query: 33 IQGIES-----STASGDLTENTRDTWKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQFKKGPQ 89 +QG+ + A GD + D W C D GC VN C +C + + K+G + Sbjct: 938 VQGVSD*ART*NMAGGDFKPSEGD-WTCSDAGCGNVNFARRSSCNRCGIEKKEDKNKKQGIE 1120
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592918949|gb|GAXK01039426.1| (TSA: Calanus finmarchicus comp719659_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 4.549e+0 Identity = 16/43 (37.21%), Postives = 20/43 (46.51%), Query Frame = 0 Query: 41 ASGDLTENTRDT-WKCPDPGCKKVNIKSAKCCIQCQLPRNSAH 82 A G+ EN D+ W CPD KVN+ C QC + H Sbjct: 711 AGGNRVENISDSSWICPDLYLDKVNV----CATQCNRVHDGCH 827
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Match: gi|592865362|gb|GAXK01092200.1| (TSA: Calanus finmarchicus comp76844_c6_seq14 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 7.783e+0 Identity = 13/30 (43.33%), Postives = 15/30 (50.00%), Query Frame = 0 Query: 70 CCIQCQLPRNSAHQFKKGPQNVYLSSPNAN 99 C + Q+PRNS F VYLS N N Sbjct: 73 CALLLQIPRNSCTHFPTSLYTVYLSW*NTN 162
BLAST of EMLSAG00000004049 vs. L. salmonis peptides
Match: EMLSAP00000004049 (pep:novel supercontig:LSalAtl2s:LSalAtl2s215:171125:188065:-1 gene:EMLSAG00000004049 transcript:EMLSAT00000004049 description:"augustus-LSalAtl2s215-processed-gene-2.7") HSP 1 Score: 213.001 bits (541), Expect = 2.924e-72 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 Query: 1 MTSLASSTKSSETKESCSERKKEDXSSNTVANIQGIESSTASGDLTENTRDTWKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQFKKGPQNVYLSSPNANPLDYSI 105 MTSLASSTKSSETKESCSERKKEDXSSNTVANIQGIESSTASGDLTENTRDTWKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQFKKGPQNVYLSSPNANPLDYSI Sbjct: 1 MTSLASSTKSSETKESCSERKKEDXSSNTVANIQGIESSTASGDLTENTRDTWKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQFKKGPQNVYLSSPNANPLDYSI 105
BLAST of EMLSAG00000004049 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold69_size418775-snap-gene-2.25 (protein:Tk03252 transcript:maker-scaffold69_size418775-snap-gene-2.25-mRNA-1 annotation:"translin-associated protein x") HSP 1 Score: 60.077 bits (144), Expect = 2.887e-12 Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0 Query: 51 DTWKCPDPGCKKVNIKSAKCCIQCQLPRNSAHQFKKG 87 DTW+CPDPGCK+ N K+ + C QC LP SA QFKKG Sbjct: 46 DTWRCPDPGCKRENQKTDQACTQCSLPSQSAQQFKKG 82 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004049 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004049 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 10
BLAST of EMLSAG00000004049 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000004049 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004049 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004049 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004049 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s215:171125..188065- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004049-686815 ID=EMLSAG00000004049-686815|Name=EMLSAG00000004049|organism=Lepeophtheirus salmonis|type=gene|length=16941bp|location=Sequence derived from alignment at LSalAtl2s215:171125..188065- (Lepeophtheirus salmonis)back to top Add to Basket
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