EMLSAG00000004165, EMLSAG00000004165-686931 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004165
Unique NameEMLSAG00000004165-686931
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004165 vs. C. finmarchicus
Match: gi|592903768|gb|GAXK01054607.1| (TSA: Calanus finmarchicus comp465863_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.158e-1
Identity = 11/36 (30.56%), Postives = 22/36 (61.11%), Query Frame = 0 
Query:    3 HPYHQISKYVKVHSSEEEWNLLAKSFTKNGIFLIVL 38
            HP HQI  + +V+ + +  N  A   ++N +FL+++
Sbjct: 1790 HPVHQIINWTEVYPTRQSLNQSATEDSENRVFLLIV 1897
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BLAST of EMLSAG00000004165 vs. C. finmarchicus
Match: gi|592903769|gb|GAXK01054606.1| (TSA: Calanus finmarchicus comp465863_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.160e-1
Identity = 11/36 (30.56%), Postives = 22/36 (61.11%), Query Frame = 0 
Query:    3 HPYHQISKYVKVHSSEEEWNLLAKSFTKNGIFLIVL 38
            HP HQI  + +V+ + +  N  A   ++N +FL+++
Sbjct: 1805 HPVHQIINWTEVYPTRQSLNQSATEDSENRVFLLIV 1912
[Close]
BLAST of EMLSAG00000004165 vs. C. finmarchicus
Match: gi|592903766|gb|GAXK01054609.1| (TSA: Calanus finmarchicus comp465863_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.191e-1
Identity = 11/36 (30.56%), Postives = 22/36 (61.11%), Query Frame = 0 
Query:    3 HPYHQISKYVKVHSSEEEWNLLAKSFTKNGIFLIVL 38
            HP HQI  + +V+ + +  N  A   ++N +FL+++
Sbjct: 1790 HPVHQIINWTEVYPTRQSLNQSATEDSENRVFLLIV 1897
[Close]
BLAST of EMLSAG00000004165 vs. C. finmarchicus
Match: gi|592903767|gb|GAXK01054608.1| (TSA: Calanus finmarchicus comp465863_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.194e-1
Identity = 11/36 (30.56%), Postives = 22/36 (61.11%), Query Frame = 0 
Query:    3 HPYHQISKYVKVHSSEEEWNLLAKSFTKNGIFLIVL 38
            HP HQI  + +V+ + +  N  A   ++N +FL+++
Sbjct: 1805 HPVHQIINWTEVYPTRQSLNQSATEDSENRVFLLIV 1912
[Close]
BLAST of EMLSAG00000004165 vs. C. finmarchicus
Match: gi|592781832|gb|GAXK01172736.1| (TSA: Calanus finmarchicus comp5206072_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 9.195e+0
Identity = 19/60 (31.67%), Postives = 27/60 (45.00%), Query Frame = 0 
Query:    1 NLHPYHQISKYVKVHSSEEEWNLLAKSFTKNGIFLIVLVYNHGYTDFGRDCMGGVLRNSA 60
            N     ++S Y      + +W+ L + FT  G +     Y  GYTD+    MGG  RNS 
Sbjct:  446 NADVIPELSSYETNSWVQYKWDTLQREFTCCGGY----GYAQGYTDWKHTSMGGA-RNSV 610
[Close]
BLAST of EMLSAG00000004165 vs. C. finmarchicus
Match: gi|592888824|gb|GAXK01069551.1| (TSA: Calanus finmarchicus comp313075_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 9.983e+0
Identity = 9/24 (37.50%), Postives = 16/24 (66.67%), Query Frame = 0 
Query:   19 EEWNLLAKSFTKNGIFLIVLVYNH 42
            E W+L+ K   +N I L++++Y H
Sbjct: 1539 EPWSLVTKLLPRNSIKLLIMLYKH 1610
[Close]
BLAST of EMLSAG00000004165 vs. L. salmonis peptides
Match: EMLSAP00000004165 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2206:1371:2666:1 gene:EMLSAG00000004165 transcript:EMLSAT00000004165 description:"snap_masked-LSalAtl2s2206-processed-gene-0.0")

HSP 1 Score: 165.622 bits (418), Expect = 1.939e-54
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 NLHPYHQISKYVKVHSSEEEWNLLAKSFTKNGIFLIVLVYNHGYTDFGRDCMGGVLRNSAFRNAPLNRTSPSKIFTKY 78
            NLHPYHQISKYVKVHSSEEEWNLLAKSFTKNGIFLIVLVYNHGYTDFGRDCMGGVLRNSAFRNAPLNRTSPSKIFTKY
Sbjct:    1 NLHPYHQISKYVKVHSSEEEWNLLAKSFTKNGIFLIVLVYNHGYTDFGRDCMGGVLRNSAFRNAPLNRTSPSKIFTKY 78
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004165 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004165 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592903768|gb|GAXK01054607.1|7.158e-130.56TSA: Calanus finmarchicus comp465863_c0_seq2 trans... [more]
gi|592903769|gb|GAXK01054606.1|7.160e-130.56TSA: Calanus finmarchicus comp465863_c0_seq1 trans... [more]
gi|592903766|gb|GAXK01054609.1|7.191e-130.56TSA: Calanus finmarchicus comp465863_c0_seq4 trans... [more]
gi|592903767|gb|GAXK01054608.1|7.194e-130.56TSA: Calanus finmarchicus comp465863_c0_seq3 trans... [more]
gi|592781832|gb|GAXK01172736.1|9.195e+031.67TSA: Calanus finmarchicus comp5206072_c0_seq1 tran... [more]
gi|592888824|gb|GAXK01069551.1|9.983e+037.50TSA: Calanus finmarchicus comp313075_c0_seq1 trans... [more]
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BLAST of EMLSAG00000004165 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000041651.939e-54100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2206:1371... [more]
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BLAST of EMLSAG00000004165 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004165 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004165 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004165 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2206supercontigLSalAtl2s2206:1371..2666 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s2206-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004165 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004165EMLSAT00000004165-700012Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2206:1371..2666+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004165-686931 ID=EMLSAG00000004165-686931|Name=EMLSAG00000004165|organism=Lepeophtheirus salmonis|type=gene|length=1296bp|location=Sequence derived from alignment at LSalAtl2s2206:1371..2666+ (Lepeophtheirus salmonis)
AATCTACACCCATACCACCAGATTGTAAGTTTTATTACTATATACTTTGT
GTGATTTTATTGGGAGGCTGAAAGTAACAAAAATTAACGTATATCTCCCG
TGAATACAAGGTATATTTCACATTAATGCAACGTAAATCTTACGTAAATT
AAAACGTAAATCCAACGTTTAAATATCTTTCCTAGATAGTGAATTATTAA
CCACGTATCAACGAAACTCAACGTAAATTAGACGTAAATACAACAAGGCA
CTTACTTAAATTCAACGTTAAAAAGTTAAGACATTACCTTGGTGACAGAT
AATGCCTCAAATATGGTTGCTGTTATAAGTCAGACTGTTATAAGTACTTC
CATATTGGATGCTTTGTGCATTCATTGAATATCTTCCCCAAAATGTAATC
AAACTGGGAGAAGTGGAGGCAAGGTTCGAAAAATTTCTGGTTTTTTTTTT
TGCCTTTGAGTTGTCAAGCCTTATACATATTCGAAGAAAACCAAAAACTG
TTCAACCTTCCCAACCAAAAATTAAAAACAAATGTTTCAACACGTTGGAA
GCAGTTAAAAGCTCAAAAAGAGAGCCAATAAGTGCCTGAGAAAGATTTCC
TGTTCACATTAAAATATCTTGCTAATCGTTCATCTCAGATTTTTATGAAT
AATAATAAACAAACTTATTTATTAAATATAATAATATTTATATATTCAAA
ATCCTAGATTGTATTATCATTTGATTTTTATTAGCTAAGAGTAAGATACA
TTAAAAATTAATTGACACGTGTAGAGCAATATGGGATGTTCTTCAGGTAT
TTTGTGAACAAATTAAACTTTTAATTTTTCACCGTTATTTATAGAGCAAA
TATGTCAAAGTTCACAGCAGTGAAGAAGAATGGAACTTATTAGCAAAGAG
TTTTACAAAAAATGGAATTTTCCTAATTGTGTTGGTAAGATATATCATTT
TTACTAAACATTAATTAAAGTAATAATCTTTCCATAACTAAATTCATTAA
CGTAGGTAGGATTGATGGAAACCACATTACAATTCAAGGTAAACGCAGAT
TGGGTTCAATTTGTTATAACTATAAAGGGAGTCATTTAATTGTTCTCATA
GATATTTGCATGTTTGCAATGCAAATTATGATTAATGAATATACATATAA
ATATTATTATATTTTAATCATAGGTTTATAATCATGGATATACGGATTTT
GGTCGTGATTGTATGGGAGGAGTTTTGAGGAACTCAGCATTTAGAAATGC
CCCGCTCAATAGAACTTCCCCTTCTAAGATTTTTACCAAATACTAA
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