EMLSAG00000004202, EMLSAG00000004202-686968 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004202
Unique NameEMLSAG00000004202-686968
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592782680|gb|GAXK01171888.1| (TSA: Calanus finmarchicus comp63654_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 110.153 bits (274), Expect = 1.113e-26
Identity = 56/155 (36.13%), Postives = 89/155 (57.42%), Query Frame = 0
Query:  158 QKDQHGILDTFSLSFAGNFDFSRSYEGLKKILQGLS----EFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCS 308
            ++ +  +L+T +LS+AGN DFSR+ +  K I   L+      +DLKL+H+ V++A D + E         R  E   E E L+ GITTV+GA + +Q+CW KTAC  G+Y+ +L  K+ + IV  ++ P  W  T+D    ++  E +C  + CS
Sbjct:  199 EEKETSLLETLNLSYAGNMDFSRALDQAKNIGSSLATAVGSIVDLKLVHNFVSVALDKLGEADRRG----RSEEKMREQEELKSGITTVVGAALGEQQCWEKTACKAGEYAASLPGKDVIFIVLDRLVPASWIGTLDSVKESATYEQNCNRYECS 651          
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592885166|gb|GAXK01073209.1| (TSA: Calanus finmarchicus comp148187_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 54.6842 bits (130), Expect = 1.040e-7
Identity = 34/117 (29.06%), Postives = 57/117 (48.72%), Query Frame = 0
Query:  194 EFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKK---TMDVFVSASNNETDCRTFLC 307
            +F+D+ LI + V+LAFD +       S  +R      E+E +R  IT  +  ++ KQEC  +  C +GD    +K K    ++ +   P  W K    +DV  + S  ++DC  + C
Sbjct:  421 DFVDVALIRACVDLAFDGLTS-QVRLSPLARSDVLPKENEEMRNFITYGLSGMVGKQECLNRALCQLGDLIAEVKGKSIAFMLLEGTIPASWTKLRAAIDVVEAGSEVDSDCSVYEC 768          
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592779370|gb|GAXK01175198.1| (TSA: Calanus finmarchicus comp2923_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 2.241e-2
Identity = 29/107 (27.10%), Postives = 50/107 (46.73%), Query Frame = 0
Query:  200 LIHSGVNLAFDTMAEDPSENSVYSR----IGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDC 302
            LI +G+ L F      PS  SV  R    +G+ SP   ++ R +  +  A++  +EC  + AC +G  +    I + L   ++   P ++ K M+ F    N+  DC
Sbjct:  393 LIIAGLALLF------PSVTSVAVRKRRDVGDESPMSNMVER-VQDMYMAVLQSEECLERVACEVGGLAEDAGISKSLTKASESFIPKKYSKMMNKF----NHGKDC 680          
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592788992|gb|GAXK01165576.1| (TSA: Calanus finmarchicus comp144_c43_seq16 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 1.429e-1
Identity = 14/39 (35.90%), Postives = 24/39 (61.54%), Query Frame = 0
Query:   46 SNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYL 84
            S+   + + + G  +PLRG+A VA  +G+PG+  L+  L
Sbjct:  189 SSWLGRCLRLTGNYLPLRGVAGVATGLGVPGSYWLKDTL 305          
BLAST of EMLSAG00000004202 vs. C. finmarchicus
Match: gi|592788857|gb|GAXK01165711.1| (TSA: Calanus finmarchicus comp144_c117_seq28 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 3.301e-1
Identity = 14/39 (35.90%), Postives = 24/39 (61.54%), Query Frame = 0
Query:   46 SNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYL 84
            S+   + + + G  +PLRG+A VA  +G+PG+  L+  L
Sbjct:  228 SSWLGRCLRLTGNYLPLRGVAGVATGLGVPGSYWLKDTL 344          
BLAST of EMLSAG00000004202 vs. L. salmonis peptides
Match: EMLSAP00000004202 (pep:novel supercontig:LSalAtl2s:LSalAtl2s221:567304:569227:-1 gene:EMLSAG00000004202 transcript:EMLSAT00000004202 description:"maker-LSalAtl2s221-augustus-gene-5.22")

HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0
Query:    1 MVITYRVVLLFLLLKSTFGGRLLSETESTSLQERPSFVSKFVGSISNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYLTPSKAMTRSDGSTTTDSIKRQYIQAKKTLTTALLGVLGMLRMQLFLGILFIFAQVSSSFQYRNGHHPIYYGHVQKDQHGILDTFSLSFAGNFDFSRSYEGLKKILQGLSEFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCSPKDRE 313
            MVITYRVVLLFLLLKSTFGGRLLSETESTSLQERPSFVSKFVGSISNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYLTPSKAMTRSDGSTTTDSIKRQYIQAKKTLTTALLGVLGMLRMQLFLGILFIFAQVSSSFQYRNGHHPIYYGHVQKDQHGILDTFSLSFAGNFDFSRSYEGLKKILQGLSEFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCSPKDRE
Sbjct:    1 MVITYRVVLLFLLLKSTFGGRLLSETESTSLQERPSFVSKFVGSISNTFTKFIHIIGGVVPLRGIASVAADIGIPGALTLQHYLTPSKAMTRSDGSTTTDSIKRQYIQAKKTLTTALLGVLGMLRMQLFLGILFIFAQVSSSFQYRNGHHPIYYGHVQKDQHGILDTFSLSFAGNFDFSRSYEGLKKILQGLSEFIDLKLIHSGVNLAFDTMAEDPSENSVYSRIGEPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCSPKDRE 313          
BLAST of EMLSAG00000004202 vs. Select Arthropod Genomes
Match: EFX69117.1 (hypothetical protein DAPPUDRAFT_329459 [Daphnia pulex])

HSP 1 Score: 50.447 bits (119), Expect = 6.125e-7
Identity = 26/83 (31.33%), Postives = 44/83 (53.01%), Query Frame = 0
Query:  232 DEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDC-RTFLCSPKDRE 313
            D V    ++TV+GA +  Q+C   +AC  G+Y   +  KE +++V  +  P  W+ T+  F  A+  + DC + F CS   +E
Sbjct:   54 DYVTPEVMSTVVGAALGDQDCLRYSACKAGNYVADVTGKEIVLMVLDRWVPNSWQGTLRAFKEAATYKDDCKKQFPCSNPQQE 136          
BLAST of EMLSAG00000004202 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold895_size84271-snap-gene-0.34 (protein:Tk08202 transcript:maker-scaffold895_size84271-snap-gene-0.34-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_329459")

HSP 1 Score: 127.487 bits (319), Expect = 1.210e-35
Identity = 66/165 (40.00%), Postives = 101/165 (61.21%), Query Frame = 0
Query:  164 ILDTFSLSFAGNFDFSRSYEGLKKILQGLSEFIDLKLIHSGVNLAFDTMAEDPS-----ENSVYSRIG----------EPSPEDEVLRRGITTVIGALMNKQECWIKTACIIGDYSRTLKIKEFLIIVAKKIAPPEWKKTMDVFVSASNNETDCRTFLCSPKDRE 313
            +LDTFSLSFAGNF+F+ + EGL KI++G+S FIDL +I + V++  D      S      N ++  I           E +   E L++ ITTV+GA+++KQEC+ +TAC+IG  + +   K+ + I+A+KI  P WK T+D+  + S +  DC  F CSP+ +E
Sbjct:   56 LLDTFSLSFAGNFNFANTMEGLSKIMEGISSFIDLSIIRATVDVLMDKFLPSGSGELDFSNDIHGPIPRRDMNVEEFIEKNRRQEDLKQEITTVVGAVLDKQECYQRTACMIGRKASSFAAKDVMFIMAEKIV-PSWKYTLDLIKNGSQDALDCAAFTCSPESKE 219          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004202 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004202 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592782680|gb|GAXK01171888.1|1.113e-2636.13TSA: Calanus finmarchicus comp63654_c2_seq1 transc... [more]
gi|592885166|gb|GAXK01073209.1|1.040e-729.06TSA: Calanus finmarchicus comp148187_c0_seq1 trans... [more]
gi|592779370|gb|GAXK01175198.1|2.241e-227.10TSA: Calanus finmarchicus comp2923_c0_seq1 transcr... [more]
gi|592788992|gb|GAXK01165576.1|1.429e-135.90TSA: Calanus finmarchicus comp144_c43_seq16 transc... [more]
gi|592788857|gb|GAXK01165711.1|3.301e-135.90TSA: Calanus finmarchicus comp144_c117_seq28 trans... [more]
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BLAST of EMLSAG00000004202 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000042020.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s221:56730... [more]
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BLAST of EMLSAG00000004202 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004202 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
EFX69117.16.125e-731.33hypothetical protein DAPPUDRAFT_329459 [Daphnia pu... [more]
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BLAST of EMLSAG00000004202 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004202 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold895_size84271-snap-gene-0.341.210e-3540.00protein:Tk08202 transcript:maker-scaffold895_size8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s221supercontigLSalAtl2s221:567304..569227 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s221-augustus-gene-5.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004202 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004202EMLSAT00000004202-700049Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s221:567304..569227-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004202-686968 ID=EMLSAG00000004202-686968|Name=EMLSAG00000004202|organism=Lepeophtheirus salmonis|type=gene|length=1924bp|location=Sequence derived from alignment at LSalAtl2s221:567304..569227- (Lepeophtheirus salmonis)
ATGGTCATCACTTATAGGTAATGTTGTTAATTTCGATTCACTAATTAAAT CCAACTGTTTTAAGCAAAAAAAGTCCTTATTTTCAGGGTCGTACTATTAT TTCTGTTATTAAAGTCCACTTTTGGGGGAAGATTACTCTCAGAAACAGAG TCAACCTCCCTCCAGGAACGTCCTTCTTTCGTTTCAAAATTTGTGGGCAG TATCTCTAATACTTTTACAAAGTTTATACATATCATTGGAGGTGTTGTAC CCCTAAGGGGCATTGCCTCCGTTGCAGCAGATATTGGTATACCCGGTGCA TTAACTCTTCAGCATTATCTGACACCAAGCAAGGCTATGACTCGTAGTGA TGGATCTACGACAACAGACTCCATCAAAAGACAATATATCCAGGCTAAAA AGACCCTTACTACTGCTTTGTTGGGAGTTCTAGGGATGTTGTATACCCAT CTTCATTAAGAGTAATTGTTTCTTTGTTTCTAGTCCACCTTTGTAAAAGA TTAAACTTTTTGAGCAATTTCATAATTACTGTCCTTATTTTGTTTTTTTG TTATTGTGGAGTAAGAGTAATGATGTGGTATAAAACATTCCCTTTACTTT TATCAGGTTACAGAGGCTGMTTACTCAAAGCAGCCTGTTATTGTGGTAAG CGTTTATCTGCTTCCGTCACAGGGGCTACGGCCATAACGCTTCTCCTCTC TACAATTTCAAATCAATTACCTGAGTCAATAACAGATGTTTATACTACAC TGAGAAATTCTATTTTTTATTCTGACGACTGTGAGCAATATGATTGCCAC CATGAGGATTTGACATTTTCCTTGTTGAAAGACAAGCTACAAAATCTACT TACTAAATTATAAAAATGATGTATTTATGAGTGTTTTTATTACTATTTAA ATTGACTGTATAGTTATACTTCCATTAAATCATTTATTATATCCTTAATC TATTGATGGACTAAACACATCAGTAAAAGATGCTACAATATATTGATAAT AATCCTTTTAAACCAATGGTTACTGTTGTTGTTTGCTTCGTGTTATAGAT TAGGTGACCTACACGCACACCTTTTGACCTGCCAGGTTTGTTGGTTATTT TTAGCAGGAATATTTTTCGAATCACTTGACGAAACAGAGTTCAGAGTTGA AGGAAAGCGAAAAAATTCAAATATCTTTTTTTCACTCACTCTCATAGGAA GTGACATAGGAGAATGCAACTATTTTTAGGTATTTTGTTTATTTTCGCTC AAGTATCATCAAGCTTTCAATACAGAAATGGTCATCACCCCATCTACTAT GGTCATGTACAGAAGGATCAACATGGGATTTTAGATACATTCTCCCTCAG CTTTGCAGGAAACTTTGATTTCTCTAGATCTTATGAGGGACTAAAGAAAA TACTACAGGGGCTATCAGAATGTAAGTAAACCATTTTGCTATGTTTAAAA AAGAAATCATTTCTTAATTTGTTTCTTTGCTTGCTACCAATAATTATCTA TAGTCATTGATTTGAAACTGATACACTCTGGAGTCAATTTGGCTTTTGAT ACAATGGCTGAAGATCCAAGTGAAAACTCTGTCTATTCTCGTATTGGAGA GCCTAGTCCCGAGGACGAAGTCCTACGTAGAGGAATCACAACTGTTATTG GTGCTTTAATGAATAAACAAGAATGTTGGATCAAGACCGCTTGTATAATT GGAGACTACTCAAGGACTCTTAAAATAAAAGAATTTCTCATCATGTAAGG AACTCATTTTTTTTTTTAAATATTAGCAACGTTTTTTTTAATAAATGTAT TTTCAGAGTTGCCAAGAAGATAGCACCTCCTGAGTGGAAGAAAACAATGG ATGTTTTTGTATCTGCCTCAAATAATGAGACGGACTGTCGTACATTTCTT TGCTCTCCTAAAGACAGGGAATGA
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